mRNA_P-canaliculata_contig102249.356.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig102249.356.1
Unique NamemRNA_P-canaliculata_contig102249.356.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig102249.356.1 vs. uniprot
Match: A0A518ESI2_9BACT (Translation initiation factor Sui1 n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518ESI2_9BACT)

HSP 1 Score: 65.9 bits (159), Expect = 5.660e-11
Identity = 51/125 (40.80%), Postives = 62/125 (49.60%), Query Frame = 1
Query:   19 DRVSLGNEEGLIHNPFAALAGRSVSSSLGSTGGDLPDQATRDGAAGSPATGEP-DRDSGPL-----SKVEVRRERKGRGGKVVTLV--TWLAGEPPEPLPDYCKVLAKGLGTGARVDDGRIVLQG 369
            DR       GL HNPFAAL  R V  S+G  G  + +    D  AG+PA  E   R +G L     + + VR ERKG GGK VT++  +   G     L    K L K LG GAR  D  IV+QG
Sbjct:   20 DRGDGSQSGGLTHNPFAALRARVVGDSVG--GDSVQESPGVDARAGAPAESEARSRGAGALGLEAGATLIVRHERKGHGGKTVTVIDLSRAGGSSKATLESLAKDLRKALGAGARAGDQEIVVQG 142          
BLAST of mRNA_P-canaliculata_contig102249.356.1 vs. uniprot
Match: A0A838IC75_9DELT (Translation initiation factor n=1 Tax=Bradymonadaceae bacterium TaxID=2740543 RepID=A0A838IC75_9DELT)

HSP 1 Score: 65.1 bits (157), Expect = 6.590e-11
Identity = 51/126 (40.48%), Postives = 66/126 (52.38%), Query Frame = 1
Query:    1 MGKK--PKDRVSL-GNEEGLIHNPFAALAGRSVSSSLGSTGGDLPDQATRDGAAGSPATGEPDRDSGPLSKVEVRRERKGRGGKVVTLVTWLAGEPPEPLPDYCKVLAKGLGTGARVDDGRIVLQG 369
            M KK  PKD+++   + +G  HNPFA L        LG      P       AA +P  GEP      ++K+ +RRERKGRGGK VTLV  +     E L +  K L K  G GA V++G IV+QG
Sbjct:    1 MSKKNRPKDKLATDADAKGFSHNPFAQL--------LGDPNAPAPKAQPEPSAAKTP--GEPVALEA-IAKIVLRRERKGRGGKTVTLVEGVDSLGDEGLEELAKRLRKAHGVGAVVEEGTIVVQG 115          
BLAST of mRNA_P-canaliculata_contig102249.356.1 vs. uniprot
Match: A0A1F9FYI6_9DELT (SUI1 domain-containing protein n=1 Tax=Deltaproteobacteria bacterium RBG_16_71_12 TaxID=1797848 RepID=A0A1F9FYI6_9DELT)

HSP 1 Score: 60.8 bits (146), Expect = 1.720e-9
Identity = 31/58 (53.45%), Postives = 39/58 (67.24%), Query Frame = 1
Query:  196 LSKVEVRRERKGRGGKVVTLVTWLAGEPPEPLPDYCKVLAKGLGTGARVDDGRIVLQG 369
            L KV VR+ERKG GGK VT++   AG  P  L + C  L + LG GAR++DG +VLQG
Sbjct:   40 LEKVVVRKERKGHGGKTVTVI---AGIAPGALDELCGELKRALGCGARIEDGAVVLQG 94          
BLAST of mRNA_P-canaliculata_contig102249.356.1 vs. uniprot
Match: UPI001A1AC9D5 (Translation initiation factor n=2 Tax=Myxococcaceae TaxID=31 RepID=UPI001A1AC9D5)

HSP 1 Score: 58.2 bits (139), Expect = 2.350e-8
Identity = 49/123 (39.84%), Postives = 59/123 (47.97%), Query Frame = 1
Query:    1 MGKKPKDRVSLGNEEGLIHNPFAALAGRSVSSSLGSTGGDLPDQATRDGAAGSPATGEPDRDSGPLSKVEVRRERKGRGGKVVTLVTWLAGEPPEPLPDYCKVLAKGLGTGARVDDGRIVLQG 369
            MGK+ K +          HNPFAALA +                A   G A  PA  +P+   GP   V VR ERKGRGGK VT+V  L G P   L  + K L   LG G  ++DG +VLQG
Sbjct:    1 MGKRDK-KDEAPAPAAPFHNPFAALAAQR--------------DALPTGPAPKPAATKPE-PKGPARAV-VRMERKGRGGKEVTVVEQL-GLPEAQLEVWLKALKGSLGCGGALEDGTLVLQG 105          
BLAST of mRNA_P-canaliculata_contig102249.356.1 vs. uniprot
Match: E3FMD5_STIAD (Translation initiation factor 1 n=3 Tax=Stigmatella TaxID=40 RepID=E3FMD5_STIAD)

HSP 1 Score: 56.6 bits (135), Expect = 9.410e-8
Identity = 47/123 (38.21%), Postives = 61/123 (49.59%), Query Frame = 1
Query:    1 MGKKPKDRVSLGNEEGLIHNPFAALAGRSVSSSLGSTGGDLPDQATRDGAAGSPATGEPDRDSGPLSKVEVRRERKGRGGKVVTLVTWLAGEPPEPLPDYCKVLAKGLGTGARVDDGRIVLQG 369
            MGKK + +          HNPFAALAG+  +  +G      P+           A  +P+   GP +K  VR ERKGRGGK VT+V  L G PP     + K L   LG G  V++  +VLQG
Sbjct:    1 MGKKDR-KPEPAAPAAPFHNPFAALAGQREALPVG------PEPQV--------AVPKPEARKGP-AKAVVRMERKGRGGKEVTVVEQL-GLPPAEREVWLKALKGALGCGGAVEEDVLVLQG 106          
BLAST of mRNA_P-canaliculata_contig102249.356.1 vs. uniprot
Match: A0A521UDP1_9DELT (Translation initiation factor n=1 Tax=Myxococcaceae bacterium TaxID=2484252 RepID=A0A521UDP1_9DELT)

HSP 1 Score: 56.6 bits (135), Expect = 9.410e-8
Identity = 43/110 (39.09%), Postives = 52/110 (47.27%), Query Frame = 1
Query:   55 HNPFAALAGRSVSSSLGSTGGDLPDQATRDGAAGSPATGEPDRDSGPLS-----KVEVRRERKGRGGKVVTLVTWLAGEPPEPLPDYCKVLAKGLGTGARVDDGRIVLQG 369
            +NPFA LA    S  LG   G              PA   P     P++     KV VRRERKGRGGK VT+V W  G     L    + L KGLGT A+ ++  I +QG
Sbjct:   10 NNPFAKLAALRGSLPLGEPKG--------------PAAQAPVEPVDPVAALLSRKVVVRRERKGRGGKTVTVVQWPDGAEAAALDALARELRKGLGTAAQREETSIAVQG 105          
BLAST of mRNA_P-canaliculata_contig102249.356.1 vs. uniprot
Match: A0A2T6DL08_9BACT (Translation initiation factor n=1 Tax=Opitutaceae bacterium EW11 TaxID=2161865 RepID=A0A2T6DL08_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 1.150e-7
Identity = 41/117 (35.04%), Postives = 57/117 (48.72%), Query Frame = 1
Query:   19 DRVSLGNEEGLIHNPFAALAGRSVSSSLGSTGGDLPDQATRDGAAGSPATGEPDRDSGPLSKVEVRRERKGRGGKVVTLVTWLAGEPPEPLPDYCKVLAKGLGTGARVDDGRIVLQG 369
            +RV       L  NPF+AL G  + +S GS  G      +  GA+ S  T + DR      +V++ RE+ GRGGK VT+V    G       +  K + K  G G  V +GRI +QG
Sbjct:    5 NRVDTSGGSSLGQNPFSALDGLKLPTSSGSPAGP-----SSPGASASVPTAK-DRPVKNRGRVDILREKAGRGGKTVTVVAGFVGIGLPEKEELAKKMQKACGAGGTVKEGRIEIQG 115          
BLAST of mRNA_P-canaliculata_contig102249.356.1 vs. uniprot
Match: A0A085W4U2_9DELT (Translation initiation factor SUI1-related protein n=1 Tax=Hyalangium minutum TaxID=394096 RepID=A0A085W4U2_9DELT)

HSP 1 Score: 56.2 bits (134), Expect = 1.320e-7
Identity = 49/123 (39.84%), Postives = 61/123 (49.59%), Query Frame = 1
Query:    1 MGKKPKDRVSLGNEEGLIHNPFAALAGRSVSSSLGSTGGDLPDQATRDGAAGSPATGEPDRDSGPLSKVEVRRERKGRGGKVVTLVTWLAGEPPEPLPDYCKVLAKGLGTGARVDDGRIVLQG 369
            MGKK K +          HNPFAAL+G+           +LP +   + A   PA  E  +  GP   V VR ERKGRGGK VT+V  L   P E L  + K L   LG G  V++  +VLQG
Sbjct:    1 MGKKDK-KAEPAAPAAPFHNPFAALSGKRE---------ELPSKPLPEAA---PAKAEERK--GPARAV-VRMERKGRGGKEVTVVEQLGLRPAE-LEVWLKALKGSLGCGGAVEEEALVLQG 106          
BLAST of mRNA_P-canaliculata_contig102249.356.1 vs. uniprot
Match: A0A7Y5USU4_9PLAN (Translation initiation factor n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7Y5USU4_9PLAN)

HSP 1 Score: 55.5 bits (132), Expect = 2.310e-7
Identity = 46/110 (41.82%), Postives = 58/110 (52.73%), Query Frame = 1
Query:   55 HNPFAALAGRSVSSSLGSTGGDLPDQATRDGAAGSPATG---EPDRDSGPLSKVEVRRERKGRGGKVVTLVTW--LAGEPPEPLPDYCKVLAKGLGTGARVDDGRIVLQG 369
            +NPFAAL  +          G LP      G A +PA     E  ++     +V VRRER GRGGK VTL     L+G P E L    K LA+ LGTGARV++  +V+QG
Sbjct:    7 NNPFAALRDKL---------GPLPP-----GPAAAPANARDAEKPKEKRYSGRVTVRRERSGRGGKAVTLAEGPGLSGHPLEKL---AKELARSLGTGARVENNALVVQG 99          
BLAST of mRNA_P-canaliculata_contig102249.356.1 vs. uniprot
Match: A0A4P5YVB8_9BACT (SUI1 domain-containing protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A4P5YVB8_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 2.940e-7
Identity = 40/116 (34.48%), Postives = 57/116 (49.14%), Query Frame = 1
Query:   22 RVSLGNEEGLIHNPFAALAGRSVSSSLGSTGGDLPDQATRDGAAGSPATGEPDRDSGPLSKVEVRRERKGRGGKVVTLVTWLAGEPPEPLPDYCKVLAKGLGTGARVDDGRIVLQG 369
            R+      GL HNPFAAL+   + ++   T  +    A R G    P    P ++ G   +V++ R++ GRGGK VT+VT   G          K + K  GTG  V DG+I +QG
Sbjct:    6 RIPTDAGPGLSHNPFAALSSAGLPAAPEPTPSET---APRPGGDAKP----PKKNRG---RVDIIRQKAGRGGKTVTVVTGFVGIGLPEKEQLAKAMQKSCGTGGTVKDGQIEIQG 111          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102249.356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A518ESI2_9BACT5.660e-1140.80Translation initiation factor Sui1 n=1 Tax=Plancto... [more]
A0A838IC75_9DELT6.590e-1140.48Translation initiation factor n=1 Tax=Bradymonadac... [more]
A0A1F9FYI6_9DELT1.720e-953.45SUI1 domain-containing protein n=1 Tax=Deltaproteo... [more]
UPI001A1AC9D52.350e-839.84Translation initiation factor n=2 Tax=Myxococcacea... [more]
E3FMD5_STIAD9.410e-838.21Translation initiation factor 1 n=3 Tax=Stigmatell... [more]
A0A521UDP1_9DELT9.410e-839.09Translation initiation factor n=1 Tax=Myxococcacea... [more]
A0A2T6DL08_9BACT1.150e-735.04Translation initiation factor n=1 Tax=Opitutaceae ... [more]
A0A085W4U2_9DELT1.320e-739.84Translation initiation factor SUI1-related protein... [more]
A0A7Y5USU4_9PLAN2.310e-741.82Translation initiation factor n=1 Tax=Planctomycet... [more]
A0A4P5YVB8_9BACT2.940e-734.48SUI1 domain-containing protein n=1 Tax=Verrucomicr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig102249contigP-canaliculata_contig102249:629..997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size369
Cds size369
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815596.0091848-CDS-P-canaliculata_contig102249:628..9971622815596.0091848-CDS-P-canaliculata_contig102249:628..997Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102249 629..997 +
1693494156.8486526-CDS-P-canaliculata_contig102249:628..9971693494156.8486526-CDS-P-canaliculata_contig102249:628..997Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102249 629..997 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig102249.356.1prot_P-canaliculata_contig102249.356.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig102249 629..997 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig102249.356.1

>prot_P-canaliculata_contig102249.356.1 ID=prot_P-canaliculata_contig102249.356.1|Name=mRNA_P-canaliculata_contig102249.356.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=123bp
MGKKPKDRVSLGNEEGLIHNPFAALAGRSVSSSLGSTGGDLPDQATRDGA
AGSPATGEPDRDSGPLSKVEVRRERKGRGGKVVTLVTWLAGEPPEPLPDY
CKVLAKGLGTGARVDDGRIVLQG
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mRNA from alignment at P-canaliculata_contig102249:629..997+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig102249.356.1 ID=mRNA_P-canaliculata_contig102249.356.1|Name=mRNA_P-canaliculata_contig102249.356.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=369bp|location=Sequence derived from alignment at P-canaliculata_contig102249:629..997+ (Pelvetia canaliculata dioecious)
ATGGGCAAGAAGCCAAAAGACCGCGTGTCCCTCGGGAATGAGGAAGGCCT CATTCATAATCCGTTCGCGGCCCTCGCCGGACGATCCGTTTCCTCCTCGC TGGGATCCACGGGCGGCGATCTTCCGGATCAAGCCACCCGCGACGGCGCT GCCGGCAGCCCGGCCACCGGTGAACCAGACAGGGACAGCGGGCCCCTGAG CAAGGTCGAGGTCAGGCGTGAGCGGAAGGGCCGCGGAGGGAAAGTCGTGA CCCTCGTGACTTGGCTCGCTGGCGAGCCCCCGGAACCGCTGCCGGACTAC TGCAAAGTTCTCGCCAAGGGCCTCGGAACTGGCGCGCGCGTTGACGATGG CCGCATCGTCCTTCAGGGC
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Coding sequence (CDS) from alignment at P-canaliculata_contig102249:629..997+

>mRNA_P-canaliculata_contig102249.356.1 ID=mRNA_P-canaliculata_contig102249.356.1|Name=mRNA_P-canaliculata_contig102249.356.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=738bp|location=Sequence derived from alignment at P-canaliculata_contig102249:629..997+ (Pelvetia canaliculata dioecious)
ATGGGCAAGAAGCCAAAAGACCGCGTGTCCCTCGGGAATGAGGAAGGCCT
CATTCATAATCCGTTCGCGGCCCTCGCCGGACGATCCGTTTCCTCCTCGC
TGGGATCCACGGGCGGCGATCTTCCGGATCAAGCCACCCGCGACGGCGCT
GCCGGCAGCCCGGCCACCGGTGAACCAGACAGGGACAGCGGGCCCCTGAG
CAAGGTCGAGGTCAGGCGTGAGCGGAAGGGCCGCGGAGGGAAAGTCGTGA
CCCTCGTGACTTGGCTCGCTGGCGAGCCCCCGGAACCGCTGCCGGACTAC
TGCAAAGTTCTCGCCAAGGGCCTCGGAACTGGCGCGCGCGTTGACGATGG
CCGCATCGTCCTTCAGGGCATGGGCAAGAAGCCAAAAGACCGCGTGTCCC
TCGGGAATGAGGAAGGCCTCATTCATAATCCGTTCGCGGCCCTCGCCGGA
CGATCCGTTTCCTCCTCGCTGGGATCCACGGGCGGCGATCTTCCGGATCA
AGCCACCCGCGACGGCGCTGCCGGCAGCCCGGCCACCGGTGAACCAGACA
GGGACAGCGGGCCCCTGAGCAAGGTCGAGGTCAGGCGTGAGCGGAAGGGC
CGCGGAGGGAAAGTCGTGACCCTCGTGACTTGGCTCGCTGGCGAGCCCCC
GGAACCGCTGCCGGACTACTGCAAAGTTCTCGCCAAGGGCCTCGGAACTG
GCGCGCGCGTTGACGATGGCCGCATCGTCCTTCAGGGC
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