mRNA_P-canaliculata_contig102249.356.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig102249.356.1 vs. uniprot
Match: A0A518ESI2_9BACT (Translation initiation factor Sui1 n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518ESI2_9BACT) HSP 1 Score: 65.9 bits (159), Expect = 5.660e-11 Identity = 51/125 (40.80%), Postives = 62/125 (49.60%), Query Frame = 1 Query: 19 DRVSLGNEEGLIHNPFAALAGRSVSSSLGSTGGDLPDQATRDGAAGSPATGEP-DRDSGPL-----SKVEVRRERKGRGGKVVTLV--TWLAGEPPEPLPDYCKVLAKGLGTGARVDDGRIVLQG 369 DR GL HNPFAAL R V S+G G + + D AG+PA E R +G L + + VR ERKG GGK VT++ + G L K L K LG GAR D IV+QG Sbjct: 20 DRGDGSQSGGLTHNPFAALRARVVGDSVG--GDSVQESPGVDARAGAPAESEARSRGAGALGLEAGATLIVRHERKGHGGKTVTVIDLSRAGGSSKATLESLAKDLRKALGAGARAGDQEIVVQG 142
BLAST of mRNA_P-canaliculata_contig102249.356.1 vs. uniprot
Match: A0A838IC75_9DELT (Translation initiation factor n=1 Tax=Bradymonadaceae bacterium TaxID=2740543 RepID=A0A838IC75_9DELT) HSP 1 Score: 65.1 bits (157), Expect = 6.590e-11 Identity = 51/126 (40.48%), Postives = 66/126 (52.38%), Query Frame = 1 Query: 1 MGKK--PKDRVSL-GNEEGLIHNPFAALAGRSVSSSLGSTGGDLPDQATRDGAAGSPATGEPDRDSGPLSKVEVRRERKGRGGKVVTLVTWLAGEPPEPLPDYCKVLAKGLGTGARVDDGRIVLQG 369 M KK PKD+++ + +G HNPFA L LG P AA +P GEP ++K+ +RRERKGRGGK VTLV + E L + K L K G GA V++G IV+QG Sbjct: 1 MSKKNRPKDKLATDADAKGFSHNPFAQL--------LGDPNAPAPKAQPEPSAAKTP--GEPVALEA-IAKIVLRRERKGRGGKTVTLVEGVDSLGDEGLEELAKRLRKAHGVGAVVEEGTIVVQG 115
BLAST of mRNA_P-canaliculata_contig102249.356.1 vs. uniprot
Match: A0A1F9FYI6_9DELT (SUI1 domain-containing protein n=1 Tax=Deltaproteobacteria bacterium RBG_16_71_12 TaxID=1797848 RepID=A0A1F9FYI6_9DELT) HSP 1 Score: 60.8 bits (146), Expect = 1.720e-9 Identity = 31/58 (53.45%), Postives = 39/58 (67.24%), Query Frame = 1 Query: 196 LSKVEVRRERKGRGGKVVTLVTWLAGEPPEPLPDYCKVLAKGLGTGARVDDGRIVLQG 369 L KV VR+ERKG GGK VT++ AG P L + C L + LG GAR++DG +VLQG Sbjct: 40 LEKVVVRKERKGHGGKTVTVI---AGIAPGALDELCGELKRALGCGARIEDGAVVLQG 94
BLAST of mRNA_P-canaliculata_contig102249.356.1 vs. uniprot
Match: UPI001A1AC9D5 (Translation initiation factor n=2 Tax=Myxococcaceae TaxID=31 RepID=UPI001A1AC9D5) HSP 1 Score: 58.2 bits (139), Expect = 2.350e-8 Identity = 49/123 (39.84%), Postives = 59/123 (47.97%), Query Frame = 1 Query: 1 MGKKPKDRVSLGNEEGLIHNPFAALAGRSVSSSLGSTGGDLPDQATRDGAAGSPATGEPDRDSGPLSKVEVRRERKGRGGKVVTLVTWLAGEPPEPLPDYCKVLAKGLGTGARVDDGRIVLQG 369 MGK+ K + HNPFAALA + A G A PA +P+ GP V VR ERKGRGGK VT+V L G P L + K L LG G ++DG +VLQG Sbjct: 1 MGKRDK-KDEAPAPAAPFHNPFAALAAQR--------------DALPTGPAPKPAATKPE-PKGPARAV-VRMERKGRGGKEVTVVEQL-GLPEAQLEVWLKALKGSLGCGGALEDGTLVLQG 105
BLAST of mRNA_P-canaliculata_contig102249.356.1 vs. uniprot
Match: E3FMD5_STIAD (Translation initiation factor 1 n=3 Tax=Stigmatella TaxID=40 RepID=E3FMD5_STIAD) HSP 1 Score: 56.6 bits (135), Expect = 9.410e-8 Identity = 47/123 (38.21%), Postives = 61/123 (49.59%), Query Frame = 1 Query: 1 MGKKPKDRVSLGNEEGLIHNPFAALAGRSVSSSLGSTGGDLPDQATRDGAAGSPATGEPDRDSGPLSKVEVRRERKGRGGKVVTLVTWLAGEPPEPLPDYCKVLAKGLGTGARVDDGRIVLQG 369 MGKK + + HNPFAALAG+ + +G P+ A +P+ GP +K VR ERKGRGGK VT+V L G PP + K L LG G V++ +VLQG Sbjct: 1 MGKKDR-KPEPAAPAAPFHNPFAALAGQREALPVG------PEPQV--------AVPKPEARKGP-AKAVVRMERKGRGGKEVTVVEQL-GLPPAEREVWLKALKGALGCGGAVEEDVLVLQG 106
BLAST of mRNA_P-canaliculata_contig102249.356.1 vs. uniprot
Match: A0A521UDP1_9DELT (Translation initiation factor n=1 Tax=Myxococcaceae bacterium TaxID=2484252 RepID=A0A521UDP1_9DELT) HSP 1 Score: 56.6 bits (135), Expect = 9.410e-8 Identity = 43/110 (39.09%), Postives = 52/110 (47.27%), Query Frame = 1 Query: 55 HNPFAALAGRSVSSSLGSTGGDLPDQATRDGAAGSPATGEPDRDSGPLS-----KVEVRRERKGRGGKVVTLVTWLAGEPPEPLPDYCKVLAKGLGTGARVDDGRIVLQG 369 +NPFA LA S LG G PA P P++ KV VRRERKGRGGK VT+V W G L + L KGLGT A+ ++ I +QG Sbjct: 10 NNPFAKLAALRGSLPLGEPKG--------------PAAQAPVEPVDPVAALLSRKVVVRRERKGRGGKTVTVVQWPDGAEAAALDALARELRKGLGTAAQREETSIAVQG 105
BLAST of mRNA_P-canaliculata_contig102249.356.1 vs. uniprot
Match: A0A2T6DL08_9BACT (Translation initiation factor n=1 Tax=Opitutaceae bacterium EW11 TaxID=2161865 RepID=A0A2T6DL08_9BACT) HSP 1 Score: 56.6 bits (135), Expect = 1.150e-7 Identity = 41/117 (35.04%), Postives = 57/117 (48.72%), Query Frame = 1 Query: 19 DRVSLGNEEGLIHNPFAALAGRSVSSSLGSTGGDLPDQATRDGAAGSPATGEPDRDSGPLSKVEVRRERKGRGGKVVTLVTWLAGEPPEPLPDYCKVLAKGLGTGARVDDGRIVLQG 369 +RV L NPF+AL G + +S GS G + GA+ S T + DR +V++ RE+ GRGGK VT+V G + K + K G G V +GRI +QG Sbjct: 5 NRVDTSGGSSLGQNPFSALDGLKLPTSSGSPAGP-----SSPGASASVPTAK-DRPVKNRGRVDILREKAGRGGKTVTVVAGFVGIGLPEKEELAKKMQKACGAGGTVKEGRIEIQG 115
BLAST of mRNA_P-canaliculata_contig102249.356.1 vs. uniprot
Match: A0A085W4U2_9DELT (Translation initiation factor SUI1-related protein n=1 Tax=Hyalangium minutum TaxID=394096 RepID=A0A085W4U2_9DELT) HSP 1 Score: 56.2 bits (134), Expect = 1.320e-7 Identity = 49/123 (39.84%), Postives = 61/123 (49.59%), Query Frame = 1 Query: 1 MGKKPKDRVSLGNEEGLIHNPFAALAGRSVSSSLGSTGGDLPDQATRDGAAGSPATGEPDRDSGPLSKVEVRRERKGRGGKVVTLVTWLAGEPPEPLPDYCKVLAKGLGTGARVDDGRIVLQG 369 MGKK K + HNPFAAL+G+ +LP + + A PA E + GP V VR ERKGRGGK VT+V L P E L + K L LG G V++ +VLQG Sbjct: 1 MGKKDK-KAEPAAPAAPFHNPFAALSGKRE---------ELPSKPLPEAA---PAKAEERK--GPARAV-VRMERKGRGGKEVTVVEQLGLRPAE-LEVWLKALKGSLGCGGAVEEEALVLQG 106
BLAST of mRNA_P-canaliculata_contig102249.356.1 vs. uniprot
Match: A0A7Y5USU4_9PLAN (Translation initiation factor n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7Y5USU4_9PLAN) HSP 1 Score: 55.5 bits (132), Expect = 2.310e-7 Identity = 46/110 (41.82%), Postives = 58/110 (52.73%), Query Frame = 1 Query: 55 HNPFAALAGRSVSSSLGSTGGDLPDQATRDGAAGSPATG---EPDRDSGPLSKVEVRRERKGRGGKVVTLVTW--LAGEPPEPLPDYCKVLAKGLGTGARVDDGRIVLQG 369 +NPFAAL + G LP G A +PA E ++ +V VRRER GRGGK VTL L+G P E L K LA+ LGTGARV++ +V+QG Sbjct: 7 NNPFAALRDKL---------GPLPP-----GPAAAPANARDAEKPKEKRYSGRVTVRRERSGRGGKAVTLAEGPGLSGHPLEKL---AKELARSLGTGARVENNALVVQG 99
BLAST of mRNA_P-canaliculata_contig102249.356.1 vs. uniprot
Match: A0A4P5YVB8_9BACT (SUI1 domain-containing protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A4P5YVB8_9BACT) HSP 1 Score: 55.5 bits (132), Expect = 2.940e-7 Identity = 40/116 (34.48%), Postives = 57/116 (49.14%), Query Frame = 1 Query: 22 RVSLGNEEGLIHNPFAALAGRSVSSSLGSTGGDLPDQATRDGAAGSPATGEPDRDSGPLSKVEVRRERKGRGGKVVTLVTWLAGEPPEPLPDYCKVLAKGLGTGARVDDGRIVLQG 369 R+ GL HNPFAAL+ + ++ T + A R G P P ++ G +V++ R++ GRGGK VT+VT G K + K GTG V DG+I +QG Sbjct: 6 RIPTDAGPGLSHNPFAALSSAGLPAAPEPTPSET---APRPGGDAKP----PKKNRG---RVDIIRQKAGRGGKTVTVVTGFVGIGLPEKEQLAKAMQKSCGTGGTVKDGQIEIQG 111 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102249.356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig102249.356.1 >prot_P-canaliculata_contig102249.356.1 ID=prot_P-canaliculata_contig102249.356.1|Name=mRNA_P-canaliculata_contig102249.356.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=123bp MGKKPKDRVSLGNEEGLIHNPFAALAGRSVSSSLGSTGGDLPDQATRDGAback to top mRNA from alignment at P-canaliculata_contig102249:629..997+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig102249.356.1 ID=mRNA_P-canaliculata_contig102249.356.1|Name=mRNA_P-canaliculata_contig102249.356.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=369bp|location=Sequence derived from alignment at P-canaliculata_contig102249:629..997+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig102249:629..997+ >mRNA_P-canaliculata_contig102249.356.1 ID=mRNA_P-canaliculata_contig102249.356.1|Name=mRNA_P-canaliculata_contig102249.356.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=738bp|location=Sequence derived from alignment at P-canaliculata_contig102249:629..997+ (Pelvetia canaliculata dioecious)back to top |