mRNA_P-canaliculata_contig10221.348.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig10221.348.1 vs. uniprot
Match: A0A6A6PKQ2_9PEZI (Uncharacterized protein n=1 Tax=Neohortaea acidophila TaxID=245834 RepID=A0A6A6PKQ2_9PEZI) HSP 1 Score: 157 bits (397), Expect = 1.320e-40 Identity = 91/249 (36.55%), Postives = 132/249 (53.01%), Query Frame = 1 Query: 4 MKLHKPGTDQECSVTVDLNGEPCTEHAFPPHDGLTQKLHPDANVIECFIAVCDNDVVTIHTHFMGSVLHASVDIVADGAFVSTERIEGSSERVIKVQRRDWKWEMVHDLRRSSSDVHAATPTKVIGGTMHAKPL-ETGAVAARGGSGCGYKLGVGSLAVIVSCSQVAKETYYDPYVTAALGSWRERSTKNCGDGGIGATHELTLCGKEAKLSYNMQVKHLRQFEQPRFGQKSWGKFIFYYRDKLAMEQA 747
M+ H P TD+ + V +NG PC E+ P +G+ + N + C I V D D + I +F G++LH SVD++ADG+F++ +RIEGS +K +R ++ V D+ T V+ G + A L ET VA G GVGSL++++S S+ A + Y Y GSW+ R DGG+ THEL + + ++ + Q KH R Q RFG K W KFIFYYR + A+E A
Sbjct: 1 MRCHTPNTDRSAELQVFINGLPCAEYTLP--NGVVDS---EPNTLSCIIPVSDGDELKIRGYFEGTILHGSVDLLADGSFLADKRIEGSKSGEVKAVKRKLDFDRVFDMPVPPGHTSIYPSTLVVEGVLTACRLQETPTVAD------GVDDGVGSLSIVISISEHASDNYETDYSDLTCGSWKTRDIDGVTDGGLPPTHELGVHVTDPNVNPSRQSKHRRHVAQTRFGSKPWAKFIFYYRSRTAIEMA 238
BLAST of mRNA_P-canaliculata_contig10221.348.1 vs. uniprot
Match: A0A2I0RUI1_9PEZI (Uncharacterized protein n=1 Tax=Cercospora zeina TaxID=348901 RepID=A0A2I0RUI1_9PEZI) HSP 1 Score: 95.1 bits (235), Expect = 1.300e-18 Identity = 76/261 (29.12%), Postives = 120/261 (45.98%), Query Frame = 1 Query: 4 MKLHKPGTDQECSVTVDLNGEPCTEHAFPPHDGLTQKLHPDANVIECFIAVCDNDVVTIHTHFMGSVLHASVDIVADGAFVSTERIEGSSERVIKVQRRDWKWEMVHDLR--RSSSDVHAATPTKVIGGTMHAKPLETGAVAA---RGGSGCGYKLGVGSLAVIVSCSQVAKETYYDPYVTAAL-----GSWRERSTKNCGDGGIGATHELTLCGKEAK-LSYNMQVKHLRQFEQ-PRFGQKSWGKFIFYYRDKLAMEQAG 750
MK +PGTDQ+ + V +G E+ P K +P N++ECF+AV + +T+ F G+ L AS D+V DG+F+ RI ER V R+ ++E V+D + P V + A+P+E + + GVGS+ V+V+ K+T D A G W R K + GI T+ + + +K + H + RFG+K WG+F+FYYR + +++AG
Sbjct: 1 MKGERPGTDQQLEIAVCADGVRLPEYVLPG-----AKTYP--NIVECFVAVEASQEITVRGRFEGTTLAASFDLVIDGSFLQDSRIHDKGERQHAV--RNLRFERVYDCPSVKPGWTSQLQPPLDVYEADLFAQPIEESRIVLAHIEDEDKWQERPGVGSIQVVVNM----KDTQIDQRKDDAEWDIEGGGWIHRFQKPVRNSGIKPTYSMEVRRASSKPIKQKRSKTHRNHWNMHARFGEKPWGRFVFYYRSQTDIDKAG 248 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10221.348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10221.348.1 >prot_P-canaliculata_contig10221.348.1 ID=prot_P-canaliculata_contig10221.348.1|Name=mRNA_P-canaliculata_contig10221.348.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=250bp MKLHKPGTDQECSVTVDLNGEPCTEHAFPPHDGLTQKLHPDANVIECFIAback to top mRNA from alignment at P-canaliculata_contig10221:2694..3446- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10221.348.1 ID=mRNA_P-canaliculata_contig10221.348.1|Name=mRNA_P-canaliculata_contig10221.348.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=753bp|location=Sequence derived from alignment at P-canaliculata_contig10221:2694..3446- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10221:2694..3446- >mRNA_P-canaliculata_contig10221.348.1 ID=mRNA_P-canaliculata_contig10221.348.1|Name=mRNA_P-canaliculata_contig10221.348.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1500bp|location=Sequence derived from alignment at P-canaliculata_contig10221:2694..3446- (Pelvetia canaliculata dioecious)back to top |