mRNA_P-canaliculata_contig10217.343.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig10217.343.1 vs. uniprot
Match: A0A6H5KGF5_9PHAE (Fe2OG dioxygenase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KGF5_9PHAE) HSP 1 Score: 386 bits (992), Expect = 1.620e-132 Identity = 192/238 (80.67%), Postives = 200/238 (84.03%), Query Frame = 1 Query: 1 FPSIRLLHADPVVFEVEDFFTPQECDTYVKMSTESQSGRRKGGFKSMELRSVTTSSQSQFQQQRTSTTWFHHYASAPELLAKASALLGVKDYRLWEEPQTVRYRPGERFNWHLDALPPTETGASKGGQRTATVLVYLTNMDVNAGGATAFRDLGPLRVRPKKGKCLVFFPSFGGEAGCPFDLRTLHAGEVVGEVAGKGKTSKAKYIAQLWCHKKPYPPSVPVGSSHEAAEECIADYFR 714 FP IRLLHADPVVFEVE FFTPQECD Y+ MST +SGRRKGG EL+S TTSSQ Q Q TSTTWFHHYASAPEL+AKAS LLGV DY WEEPQTVRYRPGERFNWHLDALPP+E GASKGGQRTATVLVYLTNM N GGATAFRDLGPLRVRPKKGKCLVFFPSFGGEAG PFD R LHAGEVVG+ G +K KYIAQLWCHKKPYPPSVP GSSHEAAE+ I DY R Sbjct: 118 FPGIRLLHADPVVFEVEGFFTPQECDAYIAMSTLKKSGRRKGGLAPTELQSATTSSQCQ--QXXTSTTWFHHYASAPELVAKASLLLGVDDYSKWEEPQTVRYRPGERFNWHLDALPPSECGASKGGQRTATVLVYLTNMHANGGGATAFRDLGPLRVRPKKGKCLVFFPSFGGEAGSPFDSRVLHAGEVVGQ----GNKAKEKYIAQLWCHKKPYPPSVPEGSSHEAAEKPIVDYAR 349
BLAST of mRNA_P-canaliculata_contig10217.343.1 vs. uniprot
Match: D7G1H9_ECTSI (Fe2OG dioxygenase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1H9_ECTSI) HSP 1 Score: 244 bits (622), Expect = 1.450e-76 Identity = 131/250 (52.40%), Postives = 158/250 (63.20%), Query Frame = 1 Query: 1 FPSIRLLHADPVVFEVEDFFTPQECDTYVKMSTESQSGRRK-------------GGFKSMELRSVTTSSQSQFQQQRTSTTWFHHYASAPELLAKASALLGVK-DYRLWEEPQTVRYRPGERFNWHLDALPPTETGASKGGQRTATVLVYLTNMDVNAGGATAFRDLGPLRVRPKKGKCLVFFPSFGGEAGCPFDLRTLHAGEVVGEVAGKGKTSKAKYIAQLWCHKKPYPPSVPVGSSHEAAEECIADY 708 FP +RLLHA+P V V DFFT +ECD Y+ S G M+ RS T + QRTSTTWFH +++ PEL+AKASAL+GV + WEE QTVRYRPGE+F WHLDALPP AS+GGQR AT+LVYLT M GGATAFRDLGPLRVRP+KG L+FFPS GG CPFD+RTLHAGEVV + + K+IAQLW + Y P+VP + HE A +A++ Sbjct: 101 FPGLRLLHAEPPVIGVSDFFTDEECDEYISRSVSPPXXXXXXXXXXXXXXXXXXGSGPHMQ-RSATLGADVDAVAQRTSTTWFHRFSAVPELMAKASALVGVPFEEGRWEEAQTVRYRPGEKFTWHLDALPPAPDLASRGGQRIATLLVYLTEMPEGDGGATAFRDLGPLRVRPRKGSALLFFPSLGGAPDCPFDIRTLHAGEVV-----RPGAEQDKWIAQLWLRESRYTPTVPKQNRHEHAAAVVAEF 344
BLAST of mRNA_P-canaliculata_contig10217.343.1 vs. uniprot
Match: A0A6H5L0Y5_9PHAE (Fe2OG dioxygenase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Y5_9PHAE) HSP 1 Score: 244 bits (623), Expect = 3.850e-74 Identity = 130/253 (51.38%), Postives = 156/253 (61.66%), Query Frame = 1 Query: 1 FPSIRLLHADPVVFEVEDFFTPQECDTYVKMSTESQSGRRKGGFKSMEL----------------RSVTTSSQSQFQQQRTSTTWFHHYASAPELLAKASALLGVK-DYRLWEEPQTVRYRPGERFNWHLDALPPTETGASKGGQRTATVLVYLTNMDVNAGGATAFRDLGPLRVRPKKGKCLVFFPSFGGEAGCPFDLRTLHAGEVVGEVAGKGKTSKAKYIAQLWCHKKPYPPSVPVGSSHEAAEECIADY 708 FP +RLLHA+P V V DFFT +ECD Y+ S RS T + QRTSTTWFH +++ PEL+AKASAL+GV + WEE QTVRYRPGE+F WHLDALPP ASKGGQR AT+LVYLT M GGATAFRDLGPLRVRP+KG L+FFPS GG CPFD+RTLHAGEVV + + K+IAQLW ++ Y P+VP + HE A +A++ Sbjct: 323 FPGLRLLHAEPPVIGVSDFFTDEECDEYISRSVSPPXXXXXXXXXXXXXXXXXXXXXXXXGPHMQRSATLGADVDAVAQRTSTTWFHRFSAVPELMAKASALVGVPFEEGRWEEAQTVRYRPGEKFTWHLDALPPAPDLASKGGQRIATLLVYLTEMPEGDGGATAFRDLGPLRVRPRKGSALLFFPSLGGAPDCPFDIRTLHAGEVV-----RPGAEQDKWIAQLWLRERRYTPTVPKQNRHEHAASAVAEF 570
BLAST of mRNA_P-canaliculata_contig10217.343.1 vs. uniprot
Match: A0A7S2KCF3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KCF3_9STRA) HSP 1 Score: 239 bits (609), Expect = 1.580e-73 Identity = 124/241 (51.45%), Postives = 159/241 (65.98%), Query Frame = 1 Query: 1 FPSIRLLHADPVVFEVEDFFTPQECDTYVKMSTESQSGRRKGGFKSMELRSVTTSSQSQFQQQRTSTTWFHHYASAPELLAKASALLGVKDYRLWEEPQTVRYRPGERFNWHLDALPPTETGASKGGQRTATVLVYLTNMDVNAGGATAFRDLGP-----LRVRPKKGKCLVFFPSFGGEAGCPFDLRTLHAGEVVGEVAGKGKTSKAKYIAQLWCHKKPYPPSVPVGSSHEAAEECIADY 708 F R+LH DP+V V+DFFT +ECD Y+ MS + +G + G ++ RS+T + + QRTSTTWFHHY + PEL+AK+S L G+ D ++EEPQTVRY+P ++F WHLDAL P SKGGQRTAT+LVYLT++ GGAT FRDLGP L+V+PKKG L+FFP+ GG PFD+RTLHAGEVV K+IAQLW + Y P+VP + H AA E I+ Y Sbjct: 202 FDKFRVLHIDPLVIAVDDFFTHEECDKYIAMS-DPTAGNKDGD--AVMTRSMTVGKDAAAKSQRTSTTWFHHYKNVPELMAKSSRLFGLDDIGVFEEPQTVRYQPDQKFTWHLDALAPGSENISKGGQRTATLLVYLTDLGPEDGGATTFRDLGPAEGEPLKVQPKKGSALLFFPAAGGIPNTPFDIRTLHAGEVV-----SADCKSDKWIAQLWLREDSYEPTVPPENVHAAATEPISQY 434
BLAST of mRNA_P-canaliculata_contig10217.343.1 vs. uniprot
Match: K0SVE6_THAOC (Fe2OG dioxygenase domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SVE6_THAOC) HSP 1 Score: 239 bits (610), Expect = 2.800e-73 Identity = 125/245 (51.02%), Postives = 161/245 (65.71%), Query Frame = 1 Query: 1 FPSIRLLHADPVVFEVEDFFTPQECDTYVKMSTESQSGRRK--GGFKSMEL-RSVTTSSQSQFQQQRTSTTWFHHYASAPELLAKASALLGVKDYRLWEEPQTVRYRPGERFNWHLDALPP-TETGASKGGQRTATVLVYLTNMDVNAGGATAFRDLG---PLRVRPKKGKCLVFFPSFGGEAGCPFDLRTLHAGEVVGEVAGKGKTSKAKYIAQLWCHKKPYPPSVPVGSSHEAAEECIADYFR 714 F R+LH DP+V V+DFFT +ECD YV+MS ++++ + + G + + L +S T S+ + QRTSTTWFHHYA PEL+A+A+ LLG+ +EEPQTVRYR E+F WHLDAL P +S GQR +T+LVYLT++ GGAT FRDLG PL+VRPKKG L+FFPS GG CPFD+RTLH GE VGE A K+IAQLW ++ Y P+ P GS H A I +Y + Sbjct: 229 FEQFRVLHVDPMVIAVDDFFTSEECDKYVQMSIDAENNQDQEAGALQPLLLGQSQTVGKDSRSKAQRTSTTWFHHYAGVPELMARAARLLGLPGISRFEEPQTVRYRRSEKFTWHLDALSPDVANDSSSAGQRVSTLLVYLTDLKSEEGGATMFRDLGGDGPLKVRPKKGSALLFFPSAGGIPDCPFDIRTLHCGEAVGEDA-----PNEKWIAQLWLRQRDYTPTAPAGSEHRKATVAIQEYCK 468
BLAST of mRNA_P-canaliculata_contig10217.343.1 vs. uniprot
Match: A0A7S2UAB3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAB3_9STRA) HSP 1 Score: 238 bits (607), Expect = 9.150e-73 Identity = 127/247 (51.42%), Postives = 155/247 (62.75%), Query Frame = 1 Query: 1 FPSIRLLHADPVVFEVEDFFTPQECDTYVKMSTES---QSGRRKGGFKSMELR---SVTTSSQSQFQQQRTSTTWFHHYASAPELLAKASALLGVKDYRLWEEPQTVRYRPGERFNWHLDALPPTETGASKGGQRTATVLVYLTNMDVNAGGATAFRDLG-----PLRVRPKKGKCLVFFPSFGGEAGCPFDLRTLHAGEVVGEVAGKGKTSKAKYIAQLWCHKKPYPPSVPVGSSHEAAEECIADY 708 F R+LH DP+V V+DFFTP+ECD + ST + K G + ++ S T S+ + QRTSTTWFHHYA PEL+AKA L+G+ D +EEPQTVRYR E F WHLDAL PT A KGGQR AT+LVYLT++ GGAT FRDLG PL+VRPKKG L+FFP+ GG P DLRTLH GE V A + K+IAQLW + PY P+ P G+SH +A I+DY Sbjct: 235 FSKFRVLHVDPMVLCVDDFFTPEECDALIARSTTTVITADNNEKEGTTLLPMKIGQSKTVGKDSRARAQRTSTTWFHHYAGVPELMAKACRLMGINDISAFEEPQTVRYRRTEHFTWHLDALAPTPELADKGGQRCATLLVYLTDLSEKDGGATMFRDLGGSDGEPLKVRPKKGSALLFFPAAGGIPSVPLDLRTLHCGEAVASDA-----EQDKWIAQLWLRETPYTPTAPPGNSHASASSPISDY 476
BLAST of mRNA_P-canaliculata_contig10217.343.1 vs. uniprot
Match: A0A7S2N1B0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N1B0_9STRA) HSP 1 Score: 231 bits (588), Expect = 3.300e-72 Identity = 117/241 (48.55%), Postives = 154/241 (63.90%), Query Frame = 1 Query: 1 FPSIRLLHADPVVFEVEDFFTPQECDTYVKMSTESQSGRRKGGFKSMEL-RSVTTSSQSQFQQQRTSTTWFHHYASAPELLAKASALLGVKDYRLWEEPQTVRYRPGERFNWHLDALPPTETGASKGGQRTATVLVYLTNMDVNAGGATAFRDLG-----PLRVRPKKGKCLVFFPSFGGEAGCPFDLRTLHAGEVVGEVAGKGKTSKAKYIAQLWCHKKPYPPSVPVGSSHEAAEECIAD 705 F R+LH DP++ ++DF TP ECDTY+ +++ + + ME+ +S T + QRTSTTWFHHY L+AKAS LLG+K WEEPQTVRYR E+F WHLDAL P+E GGQR AT+LVYL ++ GG+T FRDLG PL+V+PKKG L+FFP+ GG PFD+RTLHAGE V + ++ K+IAQLW + Y P+ P G+SHEAA E +++ Sbjct: 57 FTKFRILHTDPMLLSIDDFLTPTECDTYISLTSNPKYDKN-ANTAPMEIGQSKTVGKDMYSKSQRTSTTWFHHYRGMAGLMAKASRLLGLKGIERWEEPQTVRYRRSEKFTWHLDALAPSEELTKAGGQRVATLLVYLADLPDGCGGSTMFRDLGGESGEPLKVQPKKGSALLFFPAAGGIPNVPFDIRTLHAGEAVSD-----ESDDDKWIAQLWLREHVYTPTAPPGNSHEAAVEAVSE 291
BLAST of mRNA_P-canaliculata_contig10217.343.1 vs. uniprot
Match: A0A7S1ZRX7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZRX7_9STRA) HSP 1 Score: 225 bits (574), Expect = 1.870e-70 Identity = 117/242 (48.35%), Postives = 154/242 (63.64%), Query Frame = 1 Query: 1 FPSIRLLHADPVVFEVEDFFTPQECDTYVKMSTESQSGRRKGGFKSMEL-RSVTTSSQSQFQQQRTSTTWFHHYASAPELLAKASALLGVKDYRLWEEPQTVRYRPGERFNWHLDALPPTETGASKGGQRTATVLVYLTNMDVNAGGATAFRDLG-----PLRVRPKKGKCLVFFPSFGGEAGCPFDLRTLHAGEVVGEVAGKGKTSKAKYIAQLWCHKKPYPPSVPVGSSHEAAEECIADY 708 F R+LH DP+V V+DF T ECDT V + T++ + M++ +S T + QRTSTTWFHHY P+L+AKAS LLG+ + WEEPQTVRYR E+F WHLDAL P++ A GGQR AT++VYL ++ +GG+T FRDLG PL+V PKKG LVFFP+ GG PFD+RTLHAGE V + ++ K+IAQLW + Y P+ P G++H AA + I+ Y Sbjct: 26 FEKFRVLHVDPMVLCVDDFLTSDECDTLVAL-TDNPKYDKNANTAPMKIGQSKTVGKDMYSKSQRTSTTWFHHYRGLPQLMAKASRLLGLDNIDRWEEPQTVRYRRSEKFTWHLDALGPSDELAKSGGQRVATLIVYLADLPEGSGGSTMFRDLGGESGEPLKVHPKKGSALVFFPAAGGIPNVPFDIRTLHAGEAVSD-----ESEDDKWIAQLWLRETKYTPTAPPGNTHAAATDAISKY 261
BLAST of mRNA_P-canaliculata_contig10217.343.1 vs. uniprot
Match: A0A448ZM68_9STRA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZM68_9STRA) HSP 1 Score: 229 bits (584), Expect = 1.710e-69 Identity = 122/252 (48.41%), Postives = 157/252 (62.30%), Query Frame = 1 Query: 1 FPSIRLLHADPVVFEVEDFFTPQECDTYVKMS----TESQSGRRKGGFKSMELRSVTTSSQSQFQQQRTSTTWFHHYASAPELLAKASALLGVKDYRLWEEPQTVRYRPGERFNWHLDALPPTETGASKGGQRTATVLVYLTNMDVNAGGATAFRDLGP------------LRVRPKKGKCLVFFPSFGGEAGCPFDLRTLHAGEVVGEVAGKGKTSKAKYIAQLWCHKKPYPPSVPVGSSHEAAEECIADY 708 F I +LH DP+V ++DFFT +ECD YV+MS T+ S + FK+ RS T + QRTSTTWFHHY + PEL++KAS L+G+ WEEPQTVRY+ E+F WHLDAL P ++ A KGGQR AT+LVYL D+ +GGAT FRDL P L+V+PKKG L+FFP+ GG G PFD+RTLH GEVV G + K+I+QLW Y P+ P G+ HE A + + +Y Sbjct: 221 FEKINVLHLDPLVLSIDDFFTEEECDRYVEMSLAPVTDEGSQKTMDSFKT---RSKTVGKDKNAKSQRTSTTWFHHYKNVPELMSKASRLVGLDTIDRWEEPQTVRYKRNEKFTWHLDALAPDQSTAEKGGQRLATLLVYLK--DLESGGATIFRDLTPATGETDDNASGFLKVQPKKGSALMFFPAAGGIPGAPFDIRTLHCGEVV-----PGASETDKWISQLWLRATXYTPTAPPGNLHEEALDRVKEY 462
BLAST of mRNA_P-canaliculata_contig10217.343.1 vs. uniprot
Match: A0A7S4QXQ4_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QXQ4_9STRA) HSP 1 Score: 225 bits (574), Expect = 3.410e-69 Identity = 117/242 (48.35%), Postives = 154/242 (63.64%), Query Frame = 1 Query: 1 FPSIRLLHADPVVFEVEDFFTPQECDTYVKMSTESQSGRRKGGFKSMEL-RSVTTSSQSQFQQQRTSTTWFHHYASAPELLAKASALLGVKDYRLWEEPQTVRYRPGERFNWHLDALPPTETGASKGGQRTATVLVYLTNMDVNAGGATAFRDLG-----PLRVRPKKGKCLVFFPSFGGEAGCPFDLRTLHAGEVVGEVAGKGKTSKAKYIAQLWCHKKPYPPSVPVGSSHEAAEECIADY 708 F R+LH DP+V V+DF T ECDT V + T++ + M++ +S T + QRTSTTWFHHY P+L+AKAS LLG+ + WEEPQTVRYR E+F WHLDAL P++ A GGQR AT++VYL ++ +GG+T FRDLG PL+V PKKG LVFFP+ GG PFD+RTLHAGE V + ++ K+IAQLW + Y P+ P G++H AA + I+ Y Sbjct: 123 FEKFRVLHVDPMVLCVDDFLTSDECDTLVAL-TDNPKYDKNANTAPMKIGQSKTVGKDMYSKSQRTSTTWFHHYRGLPQLMAKASRLLGLDNIDRWEEPQTVRYRRSEKFTWHLDALGPSDELAKSGGQRVATLIVYLADLPEGSGGSTMFRDLGGESGEPLKVHPKKGSALVFFPAAGGIPNVPFDIRTLHAGEAVSD-----ESEDDKWIAQLWLRETKYTPTAPPGNTHAAATDAISKY 358 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10217.343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10217.343.1 >prot_P-canaliculata_contig10217.343.1 ID=prot_P-canaliculata_contig10217.343.1|Name=mRNA_P-canaliculata_contig10217.343.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=238bp FPSIRLLHADPVVFEVEDFFTPQECDTYVKMSTESQSGRRKGGFKSMELRback to top mRNA from alignment at P-canaliculata_contig10217:3346..4258+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10217.343.1 ID=mRNA_P-canaliculata_contig10217.343.1|Name=mRNA_P-canaliculata_contig10217.343.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=913bp|location=Sequence derived from alignment at P-canaliculata_contig10217:3346..4258+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10217:3346..4258+ >mRNA_P-canaliculata_contig10217.343.1 ID=mRNA_P-canaliculata_contig10217.343.1|Name=mRNA_P-canaliculata_contig10217.343.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1428bp|location=Sequence derived from alignment at P-canaliculata_contig10217:3346..4258+ (Pelvetia canaliculata dioecious)back to top |