mRNA_P-canaliculata_contig102129.339.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig102129.339.1
Unique NamemRNA_P-canaliculata_contig102129.339.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102129.339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig102129contigP-canaliculata_contig102129:23..568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size546
Cds size516
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815594.8773825-UTR-P-canaliculata_contig102129:22..521622815594.8773825-UTR-P-canaliculata_contig102129:22..52Pelvetia canaliculata dioeciousUTRP-canaliculata_contig102129 23..52 +
1693494156.21994-UTR-P-canaliculata_contig102129:22..521693494156.21994-UTR-P-canaliculata_contig102129:22..52Pelvetia canaliculata dioeciousUTRP-canaliculata_contig102129 23..52 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815594.88886-CDS-P-canaliculata_contig102129:52..5681622815594.88886-CDS-P-canaliculata_contig102129:52..568Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102129 53..568 +
1693494156.229647-CDS-P-canaliculata_contig102129:52..5681693494156.229647-CDS-P-canaliculata_contig102129:52..568Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102129 53..568 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig102129.339.1prot_P-canaliculata_contig102129.339.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig102129 53..568 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig102129.339.1

>prot_P-canaliculata_contig102129.339.1 ID=prot_P-canaliculata_contig102129.339.1|Name=mRNA_P-canaliculata_contig102129.339.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=172bp
MSPYGGGWANQEISHMHQPSKEVLVKTLEKLSHYAMSIIIFCGPVRKNND
QYVLDINPNEEINAEDLSYYDHKRLLIIDNCVKINRTDDLHLFDTLQPFE
ESLYALVLNRWDCRNLYNSFNIEKCPNQLITIYSTDTPTSNKLGSYYAAF
LLKQARLFVTSLSKSINLTTSY
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mRNA from alignment at P-canaliculata_contig102129:23..568+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig102129.339.1 ID=mRNA_P-canaliculata_contig102129.339.1|Name=mRNA_P-canaliculata_contig102129.339.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=546bp|location=Sequence derived from alignment at P-canaliculata_contig102129:23..568+ (Pelvetia canaliculata dioecious)
AAAACCATAAATAACTACAAATCATTTTTCATGTCTCCATACGGCGGTGG
GTGGGCGAATCAGGAGATATCCCATATGCACCAACCTAGCAAAGAAGTTC
TAGTGAAAACGTTAGAAAAATTGTCACATTATGCGATGAGTATTATTATA
TTTTGCGGTCCGGTAAGGAAAAACAATGATCAATATGTTTTGGACATCAA
TCCAAATGAAGAAATAAATGCGGAGGACTTATCCTATTATGACCATAAAA
GATTGCTAATTATAGACAACTGTGTAAAAATAAATCGTACTGATGACCTT
CATCTATTTGACACACTTCAGCCATTTGAAGAATCCCTGTATGCTTTGGT
ACTTAACAGATGGGATTGTAGAAATCTTTACAATTCCTTTAACATAGAAA
AATGTCCTAATCAATTGATTACCATATATTCTACAGACACCCCGACATCA
AATAAATTAGGAAGTTATTATGCCGCATTTTTGTTAAAACAGGCAAGACT
ATTTGTCACTAGCCTAAGTAAATCAATTAATTTAACTACCAGTTAT
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Coding sequence (CDS) from alignment at P-canaliculata_contig102129:23..568+

>mRNA_P-canaliculata_contig102129.339.1 ID=mRNA_P-canaliculata_contig102129.339.1|Name=mRNA_P-canaliculata_contig102129.339.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1032bp|location=Sequence derived from alignment at P-canaliculata_contig102129:23..568+ (Pelvetia canaliculata dioecious)
ATGTCTCCATACGGCGGTGGGTGGGCGAATCAGGAGATATCCCATATGCA
CCAACCTAGCAAAGAAGTTCTAGTGAAAACGTTAGAAAAATTGTCACATT
ATGCGATGAGTATTATTATATTTTGCGGTCCGGTAAGGAAAAACAATGAT
CAATATGTTTTGGACATCAATCCAAATGAAGAAATAAATGCGGAGGACTT
ATCCTATTATGACCATAAAAGATTGCTAATTATAGACAACTGTGTAAAAA
TAAATCGTACTGATGACCTTCATCTATTTGACACACTTCAGCCATTTGAA
GAATCCCTGTATGCTTTGGTACTTAACAGATGGGATTGTAGAAATCTTTA
CAATTCCTTTAACATAGAAAAATGTCCTAATCAATTGATTACCATATATT
CTACAGACACCCCGACATCAAATAAATTAGGAAGTTATTATGCCGCATTT
TTGTTAAAACAGGCAAGACTATTTGTCACTAGCCTAAGTAAATCAATTAA
TTTAACTACCAGTTATATGTCTCCATACGGCGGTGGGTGGGCGAATCAGG
AGATATCCCATATGCACCAACCTAGCAAAGAAGTTCTAGTGAAAACGTTA
GAAAAATTGTCACATTATGCGATGAGTATTATTATATTTTGCGGTCCGGT
AAGGAAAAACAATGATCAATATGTTTTGGACATCAATCCAAATGAAGAAA
TAAATGCGGAGGACTTATCCTATTATGACCATAAAAGATTGCTAATTATA
GACAACTGTGTAAAAATAAATCGTACTGATGACCTTCATCTATTTGACAC
ACTTCAGCCATTTGAAGAATCCCTGTATGCTTTGGTACTTAACAGATGGG
ATTGTAGAAATCTTTACAATTCCTTTAACATAGAAAAATGTCCTAATCAA
TTGATTACCATATATTCTACAGACACCCCGACATCAAATAAATTAGGAAG
TTATTATGCCGCATTTTTGTTAAAACAGGCAAGACTATTTGTCACTAGCC
TAAGTAAATCAATTAATTTAACTACCAGTTAT
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