mRNA_P-canaliculata_contig102128.338.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig102128.338.1
Unique NamemRNA_P-canaliculata_contig102128.338.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig102128.338.1 vs. uniprot
Match: A0A3L7QIS5_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7QIS5_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 6.160e-5
Identity = 30/76 (39.47%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:   52 LEPRQLLAGDVSVSINGSTLQITGDSAANQIQVTTNAAGNVVVTGNDTTINGSPDSFVVSDSFRQVALSMGDGNDE 279
            LE R++L+G+V V++NGSTL ITGD++ N++ V     G  V   N T +NG+ D  +V  +  ++ L +  GND+
Sbjct:   14 LESRRMLSGNVQVTLNGSTLTITGDNSNNELAVEQTVGGLQVRAINGTKLNGTADGSLVFSNPSRINLDLLGGNDQ 89
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BLAST of mRNA_P-canaliculata_contig102128.338.1 vs. uniprot
Match: A0A1P8WHL4_9PLAN (Peptidyl-prolyl cis-trans isomerase A n=2 Tax=Fuerstiella marisgermanici TaxID=1891926 RepID=A0A1P8WHL4_9PLAN)

HSP 1 Score: 52.8 bits (125), Expect = 6.170e-5
Identity = 33/94 (35.11%), Postives = 56/94 (59.57%), Query Frame = 1 
Query:   52 LEPRQLLAGDVSVSINGSTLQITGDSAANQIQVTTNAAGNVVVTGND-TTINGSPDSFVVSDSF----RQVALSMGDGNDEASIDGLSAGQDIT 318
            LE R +LAG+V+    G    ++GD AAN +++  +  GN++  G D TTINGS D FV+        R + +S+G G+D  ++ G++  +++T
Sbjct:   53 LEDRMMLAGNVTAQFIGQNAFVSGDDAANSVEILVDG-GNLIARGTDGTTINGSADDFVLRTGSASLGRSLFVSLGGGDDALTMTGVTVNRNLT 145
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102128.338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A3L7QIS5_9BACT6.160e-539.47Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A1P8WHL4_9PLAN6.170e-535.11Peptidyl-prolyl cis-trans isomerase A n=2 Tax=Fuer... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig102128contigP-canaliculata_contig102128:380..994 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size498
Cds size498
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815594.8323598-CDS-P-canaliculata_contig102128:379..5661622815594.8323598-CDS-P-canaliculata_contig102128:379..566Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102128 380..566 -
1693494156.200349-CDS-P-canaliculata_contig102128:379..5661693494156.200349-CDS-P-canaliculata_contig102128:379..566Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102128 380..566 -
1622815594.8456614-CDS-P-canaliculata_contig102128:683..9941622815594.8456614-CDS-P-canaliculata_contig102128:683..994Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102128 684..994 -
1693494156.210328-CDS-P-canaliculata_contig102128:683..9941693494156.210328-CDS-P-canaliculata_contig102128:683..994Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102128 684..994 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig102128.338.1prot_P-canaliculata_contig102128.338.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig102128 380..994 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig102128.338.1

>prot_P-canaliculata_contig102128.338.1 ID=prot_P-canaliculata_contig102128.338.1|Name=mRNA_P-canaliculata_contig102128.338.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=166bp
MPRSKRRSPSRQLSYQPLEPRQLLAGDVSVSINGSTLQITGDSAANQIQV
TTNAAGNVVVTGNDTTINGSPDSFVVSDSFRQVALSMGDGNDEASIDGLS
AGQDITKSIYLYLGDGNDVVGVDGMSAGRNFKVFGGSGNDTFSSSDLNVG
RKLRLNMGQGDDNALL
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mRNA from alignment at P-canaliculata_contig102128:380..994-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig102128.338.1 ID=mRNA_P-canaliculata_contig102128.338.1|Name=mRNA_P-canaliculata_contig102128.338.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=615bp|location=Sequence derived from alignment at P-canaliculata_contig102128:380..994- (Pelvetia canaliculata dioecious)
ATGCCCCGCTCAAAACGACGCTCCCCTTCTCGCCAGCTAAGCTACCAGCC
GCTTGAACCTCGCCAATTGCTGGCTGGAGATGTTTCTGTATCAATCAATG
GTTCAACGTTGCAAATCACCGGCGACAGCGCAGCCAATCAAATTCAGGTG
ACAACTAACGCCGCGGGCAACGTCGTTGTCACCGGGAACGATACAACCAT
CAATGGTTCGCCCGATTCTTTCGTTGTAAGCGATAGCTTTCGGCAGGTGG
CGTTGAGCATGGGTGACGGGAACGACGAAGCCAGCATCGACGGACTCTCC
GCTGGTCAAGAGTTTCGATTCCTCGGTGGCAATGGAAGCGATCGATTGAC
AGTAAATAATCTCACTGCACGATACGGTCACGTGCAGGGTAATGGCGGCA
ATGATGTTCTTGATTTAAATGATTCTAGTATTACTAAATCGATTTACCTG
TACCTGGGCGATGGAAATGATGTCGTTGGCGTCGATGGAATGAGTGCAGG
CCGCAACTTCAAAGTATTTGGAGGTTCAGGAAATGACACGTTTTCGTCTA
GCGACCTGAACGTTGGTCGTAAGCTTCGATTGAACATGGGCCAAGGAGAT
GACAATGCCTTGCTT
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Coding sequence (CDS) from alignment at P-canaliculata_contig102128:380..994-

>mRNA_P-canaliculata_contig102128.338.1 ID=mRNA_P-canaliculata_contig102128.338.1|Name=mRNA_P-canaliculata_contig102128.338.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=996bp|location=Sequence derived from alignment at P-canaliculata_contig102128:380..994- (Pelvetia canaliculata dioecious)
ATGCCCCGCTCAAAACGACGCTCCCCTTCTCGCCAGCTAAGCTACCAGCC
GCTTGAACCTCGCCAATTGCTGGCTGGAGATGTTTCTGTATCAATCAATG
GTTCAACGTTGCAAATCACCGGCGACAGCGCAGCCAATCAAATTCAGGTG
ACAACTAACGCCGCGGGCAACGTCGTTGTCACCGGGAACGATACAACCAT
CAATGGTTCGCCCGATTCTTTCGTTGTAAGCGATAGCTTTCGGCAGGTGG
CGTTGAGCATGGGTGACGGGAACGACGAAGCCAGCATCGACGGACTCTCC
GCTGGTCAAGAATGCCCCGCTCAAAACGACGCTCCCCTTCTCGCCAGCTA
AGCTACCAGCCGCTTGAACCTCGCCAATTGCTGGCTGGAGATGTTTCTGT
ATCAATCAATGGTTCAACGTTGCAAATCACCGGCGACAGCGCAGCCAATC
AAATTCAGGTGACAACTAACGCCGCGGGCAACGTCGTTGTCACCGGGAAC
GATACAACCATCAATGGTTCGCCCGATTCTTTCGTTGTAAGCGATAGCTT
TCGGCAGGTGGCGTTGAGCATGGGTGACGGGAACGACGAAGCCAGCATCG
ACGGACTCTCCGCTGGTCAAGATATTACTAAATCGATTTACCTGTACCTG
GGCGATGGAAATGATGTCGTTGGCGTCGATGGAATGAGTGCAGGCCGCAA
CTTCAAAGTATTTGGAGGTTCAGGAAATGACACGTTTTCGTCTAGCGACC
TGAACGTTGGTCGTAAGCTTCGATTGAACATGGGCCAAGGAGATGACAAT
GCCTTGCTTTATTACTAAATCGATTTACCTGTACCTGGGCGATGGAAATG
ATGTCGTTGGCGTCGATGGAATGAGTGCAGGCCGCAACTTCAAAGTATTT
GGAGGTTCAGGAAATGACACGTTTTCGTCTAGCGACCTGAACGTTGGTCG
TAAGCTTCGATTGAACATGGGCCAAGGAGATGACAATGCCTTGCTT
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