mRNA_P-canaliculata_contig10199.292.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_P-canaliculata_contig10199.292.1 vs. uniprot
Match: D8LRX0_ECTSI (Vps8 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRX0_ECTSI) HSP 1 Score: 393 bits (1009), Expect = 2.900e-115 Identity = 327/624 (52.40%), Postives = 356/624 (57.05%), Query Frame = 3 Query: 456 PDLDLDRWRT---GDREDSDAPRGRPFGSRNEASVAGPPGDIPLSPPSFGG---GGNHRDGAASMGLSDPFSGDS-----YSFEADSSPSGFPPRTAFLSRDELSEDSRLLQQILKESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEYPGTDFED--DPSLQSLDVDKIIESMELETFQDDDEAIGFSGIIAGVSGNGGGGGVSLRRGSATSWRTXXXXXXXXXXXXXXXSTGEVDSATGTSRTGGIRGVGDGETSAPAASAAVARRASADSGVDGGASLGLVAANTSLGGLPADDEEDRFATEPLRAGEGSVAGAASSRWRSQSGRLAGPADTGGSSGGGDRSLTEALRKAESAELRLLRGGNRDVVSPLQVKRRMRAPTLTKAADQQSLGFPGVAGGGVNGGVGVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTTRGLILLFDHFQEIRHVLGSAAGGGSDGTPPDDSVTSLDMCVGSDTLVAGHASGRVLLWDYLRGVVLKTVTDIHSSAVVSVRCFVSRAGGGXXXXXXXXXXGAAGXXXXXMXXXXXIXXXXXXXXXXGSCDPAVITADVEGVVNKLSFRRVMWTKWVVDAECLLDG 2288
P +L+RWR G R + P SR A+ A G LSP SFGG GA S+G SD +SG Y + S SG PPRTAFLSRDE+SEDSRLLQQIL+ES XXXXXXXXXXXXXXXXXXXXXX G+D D +LQSLDVDKIIESMELE +DDD V+G GGGG + T WR +A G++ G + S +G G A GG GGG+ LT ALRKAE+AELRLLRGGNR+++SPLQVKRRMRAP Q S GFPG GVGVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGT+RGLILLFDHFQEIRHVLGSAAGGG+DG P DD VTSLDM VGSD LVAGH SGRVLLWDYLRGVVLK V D+HSSAVVSVRCFV GG X XXXXX XXXXXXXXXX S DPA ITADVEGVV+K+ FRRVMWTKWVVD ECLLDG
Sbjct: 13 PSRELERWRGDGGGGRGAGTSANLLPVASRGSATAAAAGGL--LSPRSFGGEDTSTKRGGGAESVGYSDAYSGXXXXXXXYGDGNNGSLSGAPPRTAFLSRDEVSEDSRLLQQILRESEEEIAASXXXXXXXXXXXXXXXXXXXXXXAMTRLVSSVGGAGSDLYGAADDNLQSLDVDKIIESMELEAGEDDD-----------VTGRAGGGGSGM-----TPWRASVAGGGVSTTATAWSGRRRSSTADGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGGSRASRGSLLSGVAGDAKGSAPGGG--GGGELGLTGALRKAEAAELRLLRGGNREMISPLQVKRRMRAPPPXXXXGQPSAGFPGXXXXXXXXGVGVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQEIRHVLGSAAGGGADGAPADDPVTSLDMFVGSDYLVAGHGSGRVLLWDYLRGVVLKAVVDVHSSAVVSVRCFVQGGGG-------------------XXXXXXXXXXXXXXXXXXXSSDPAAITADVEGVVSKMCFRRVMWTKWVVDTECLLDG 597
BLAST of mRNA_P-canaliculata_contig10199.292.1 vs. uniprot
Match: A0A6H5JMF4_9PHAE (Vps8 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF4_9PHAE) HSP 1 Score: 359 bits (921), Expect = 4.240e-103 Identity = 318/638 (49.84%), Postives = 346/638 (54.23%), Query Frame = 3 Query: 456 PDLDLDRWRTGDREDSDAPRGR-------PFGSRNEASVAGPPGDIPLSPPSFGG------GGNHRDGAASMGLSDPFSG----DSYSFEADSSPSGFPPRTAFLSRDELSEDSRLLQQILKESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEYPGTDFEDDPSLQSLDVDKIIESMELETFQDDDEAIGFSGIIAGVSGNGGGGGVSLRRGSATSWRTXXXXXXXXXXXXXXXSTGEVDSATGTSRTGGIRGVGDGETSAPAASAAVARRASADSGVDGGASLGLVAANTSLGGLPADDEEDRFATEPLRAGEGSVAGAASSRWRSQSGRLAGPADTGGSSGGGDRSLTEALRKAESAELRLLRGGNRDVVSPLQVKRRMRAPTLTKAADQQSLGFPGVAGGGVNGGVGVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTTRGLILLFDHFQ----------EIRHVLGSAAGGGSDGTPPDDSVTSLDMCVGSDTLVAGHASGRVLLWDYLRGVVLKTVTDIHSSAVVSVRCFVSRAGGGXXXXXXXXXXGAAGXXXXXMXXXXXIXXXXXXXXXXGSCDPAVITADVEGVVNKLSFRRVMWTKWVVDAECLLDG 2288
P +L+RWR +D RG P S+ A+ A G LSP SFGG GG GA S+G SDP+SG +Y + S SG PPRTAFLSRDE+SEDSRLLQQIL+ES XXXXXXXXX G D +LQSLDVDKIIESMELE +DDD + G +G GGG G++ R SA XXXXXXXXXXXXXXX RA GS+ L+G A GD E+AELRLLRGGNR+++SPLQVKRRMRAP Q S GFPG GVGVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGT+RGLILLFDHFQ EIRHVLGSAAGGG+DG P DD VTSLDM VGSD LVAGH SGRVLLWDYLRGVVLK V D+HSSAVVSVRCFV GG XXXXXXXXX XXX GS DPA ITADVEGVV+K+ FRRVMWTKWVVD ECLLDG
Sbjct: 6 PSRELERWR----DDGGGGRGAGTSANLPPVASQGSATAAAAGGL--LSPRSFGGEDTSTKGGR---GAESVGYSDPYSGGGGSSTYGDGNNGSLSGAPPRTAFLSRDEVSEDSRLLQQILRESEEEIAASVADRANGFGAGXXXXXXXXXAMTRLVSSVGGAGSDLYGAADDNLQSLDVDKIIESMELEAGEDDD--------VTGRAG-GGGSGMTPWRASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRASRGSL--------------LSGVA--------GDAK--------EAAELRLLRGGNREMISPLQVKRRMRAPPPXXXXGQPSAGFPGXXXXXXXXGVGVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTSRGLILLFDHFQVGGGGGRGGVEIRHVLGSAAGGGADGAPADDPVTSLDMFVGSDYLVAGHGSGRVLLWDYLRGVVLKAVVDVHSSAVVSVRCFVQGGSGGGXXXXXXXXX---------------------XXXLAGSSDPAAITADVEGVVSKMCFRRVMWTKWVVDTECLLDG 574
BLAST of mRNA_P-canaliculata_contig10199.292.1 vs. uniprot
Match: A0A835YZH2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZH2_9STRA) HSP 1 Score: 173 bits (439), Expect = 4.900e-41 Identity = 117/319 (36.68%), Postives = 146/319 (45.77%), Query Frame = 3 Query: 1491 LRKAESAELRLLRGGNRDVVSPLQVKRRMRAPTLTKAADQQSLGFPGVAGGGVNGGVGVVRMENLDAASRQLARNAAY-GKHGPGVCTATAAHSKFIAVGTTRGLILLFDHFQEIRHVLGSAAG----------------------------------------------GGSD------GTPPDDSVTSLDMCVGSDTLVAGHASGRVLLWDYLRGVVLKTVTDIHSSAVVSVRCFVSRAGGGXXXXXXXXXXGAAGXXXXXMXXXXXIXXXXXXXXXXGSCDPAVITADVEGVVNKLSFRRVMWTKWVVDAECLLDG 2288
L AE+ E RLLRGGNRDV+SPL+VKRRMR G G+G R++ L+ S+QLA+ G G GV TA A H KFIAVGT+RGL+LLFDHFQ +R VLG AG G+ G P ++TSLDMC G D L+AG+A+G + LWD++RG LKT + HS+ + V C+ +PAVITAD GVVNK++FRRVMWT WV + CLLDG
Sbjct: 1026 LAAAEAREQRLLRGGNRDVISPLRVKRRMR--------------------GARGHGLGTARLDTLNQISQQLAKGMQQRGAGGAGVPTALAVHPKFIAVGTSRGLVLLFDHFQMVRRVLGDPAGPAITRLDMCAPAPTTCGRAAIHVTTSISTSTSKTEHIDNXXXXXXVSGAQVVRRVLGDPAGPAITSLDMCAGGDYLIAGNAAGGLALWDFMRGTALKTTYEAHSAPITFVHCYKHS-------------------------------------------EPAVITADAAGVVNKVAFRRVMWTAWVAETACLLDG 1281
BLAST of mRNA_P-canaliculata_contig10199.292.1 vs. uniprot
Match: A0A2P4XRT3_9STRA (Vacuolar protein sorting-associated protein 8 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XRT3_9STRA) HSP 1 Score: 148 bits (373), Expect = 9.550e-36 Identity = 97/281 (34.52%), Postives = 143/281 (50.89%), Query Frame = 3 Query: 1491 LRKAESAELRLLRGGNRDVVSPLQVKRRMRAPTLTKAADQQSLGFPG---------VAGGGVNGGV-------GVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTTRGLILLFDHFQEIRHVLGSAAGGGSDGTPPDDSVTSLDMCVGSDTLVAGHASGRVLLWDYLRGVVLKTVTDIHSSAVVSVRCFVSRAGGGXXXXXXXXXXGAAGXXXXXMXXXXXIXXXXXXXXXXGSCDPAVITADVEGVVNKLSFRRVMWTKWVVDAECLLD 2285
L AE+ E +LL +++SPLQVKRR+RA +KA + G +A G V GVV++E ++A SRQL +N + ++GPG T A HSKFIA+GT++GL+++FDHFQ IR VLG+ DG VT++D+ GSD LV G+ SGR++LWD ++G LK V+D H + VVS+R + P +++ D G+VNKL+F ++M +VVD + L +
Sbjct: 93 LEIAEAREKQLLSCVGVELISPLQVKRRLRAHARSKALKSRREGLVAMKKNQRKKKIAEGAGTAAVATEKKSTGVVKVEPMEAISRQLRKNIEFKEYGPGSPTVVAIHSKFIAIGTSKGLVIIFDHFQNIRQVLGNTNDADGDGP-----VTAVDVSPGSDYLVCGYQSGRIVLWDMIKGTSLKAVSDAHENPVVSLRFLKDQK-------------------------------------------PVLVSVDTNGLVNKLNFSKMMGMVYVVDVDPLYE 325
BLAST of mRNA_P-canaliculata_contig10199.292.1 vs. uniprot
Match: A0A8K1FDH6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FDH6_PYTOL) HSP 1 Score: 152 bits (385), Expect = 2.710e-34 Identity = 97/284 (34.15%), Postives = 146/284 (51.41%), Query Frame = 3 Query: 1479 LTEALRKAESAELRLLRGGNRDVVSPLQVKRRMRAPTLTKAADQQ------------SLGFPGVAGGGVNG--GVGVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTTRGLILLFDHFQEIRHVLGSAAGGGSDGTPPDDSVTSLDMCVGSDTLVAGHASGRVLLWDYLRGVVLKTVTDIHSSAVVSVRCFVSRAGGGXXXXXXXXXXGAAGXXXXXMXXXXXIXXXXXXXXXXGSCDPAVITADVEGVVNKLSFRRVMWTKWVVDAECLLDG 2288
+ L AE+ E +LL ++VSPLQVKRR+R+ TK+A ++ +L G + GVV++E ++ SRQL +N + +HGPG T A HSKFIA+GT++GL+L+FDHFQ IR VLG+ SDG +T++D+ GSD LV G+ SGR++LWD ++G LK V+D H + VVS+R + P +++ D G+VNK++F ++M +VVD + + DG
Sbjct: 115 MRSPLEIAEARERQLLSCVGVELVSPLQVKRRLRSNARTKSATKRKPANRPKSKKKITLASLNADANGKDEKKSTGVVKVEAMETISRQLKKNIEFKEHGPGSPTVVAIHSKFIAIGTSKGLVLIFDHFQNIRQVLGNTNDSDSDGA-----ITAIDVSPGSDYLVCGYQSGRIVLWDMIKGTSLKAVSDAHENPVVSLRFLKDQK-------------------------------------------PVLMSVDTNGIVNKVNFSKMMGMVYVVDVDPIYDG 350
BLAST of mRNA_P-canaliculata_contig10199.292.1 vs. uniprot
Match: A0A2P4Y7R6_9STRA (Glucosidase 2 subunit beta (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y7R6_9STRA) HSP 1 Score: 152 bits (384), Expect = 3.300e-34 Identity = 99/282 (35.11%), Postives = 144/282 (51.06%), Query Frame = 3 Query: 1491 LRKAESAELRLLRGGNRDVVSPLQVKRRMRAPTLTKAADQQSLGFPG---------VAGGGVNGGV-------GVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTTRGLILLFDHFQEIRHVLGSAAGGGSDGTPPDDSVTSLDMCVGSDTLVAGHASGRVLLWDYLRGVVLKTVTDIHSSAVVSVRCFVSRAGGGXXXXXXXXXXGAAGXXXXXMXXXXXIXXXXXXXXXXGSCDPAVITADVEGVVNKLSFRRVMWTKWVVDAECLLDG 2288
L AE+ E +LL +++SPLQVKRR+RA +KA + G +A G V GVV++E ++A SRQL +N + ++GPG T A HSKFIA+GT++GL+++FDHFQ IR VLG+ DG VT++D+ GSD LV G+ SGR++LWD ++G LK V+D H + VVS+R + P +++ D G+VNKL+F ++M +VVD + L DG
Sbjct: 617 LEIAEAREKQLLSCVGVELISPLQVKRRLRAHARSKALKSRREGLVAMKKNQRKKKIAEGAGTAAVATEKKSTGVVKVEPMEAISRQLRKNIEFKEYGPGSPTVVAIHSKFIAIGTSKGLVIIFDHFQNIRQVLGNTNDADGDGP-----VTAVDVSPGSDYLVCGYQSGRIVLWDMIKGTSLKAVSDAHENPVVSLRFLKDQK-------------------------------------------PVLVSVDTNGLVNKLNFSKMMGMVYVVDVDPLYDG 850
BLAST of mRNA_P-canaliculata_contig10199.292.1 vs. uniprot
Match: A0A0W8DEQ5_PHYNI (Phosphatidylinositol transfer protein beta isoform n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DEQ5_PHYNI) HSP 1 Score: 148 bits (374), Expect = 3.730e-34 Identity = 93/265 (35.09%), Postives = 136/265 (51.32%), Query Frame = 3 Query: 1542 DVVSPLQVKRRMRAPTLTKAADQQSLGFPG---------VAGGGVNGGV-------GVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTTRGLILLFDHFQEIRHVLGSAAGGGSDGTPPDDSVTSLDMCVGSDTLVAGHASGRVLLWDYLRGVVLKTVTDIHSSAVVSVRCFVSRAGGGXXXXXXXXXXGAAGXXXXXMXXXXXIXXXXXXXXXXGSCDPAVITADVEGVVNKLSFRRVMWTKWVVDAECLLDG 2288
+++SPLQVKRR+RA +KA + G +A G V GVV++E ++A SRQL +N + ++GPG T A HSKFIA+GT++GL+++FDHFQ IR VLG+ DG VT++D+ GSD LV G+ SGR++LWD ++G LK V+D H + VVS+R + P +++ D G+VNKL+F ++M +VVD + L DG
Sbjct: 93 ELISPLQVKRRLRAHARSKALKSRREGLVAMKKNQRKKQIAEGAGTAAVAAEKKSTGVVKVEPMEAISRQLRKNIEFKEYGPGSPTVVAIHSKFIAIGTSKGLVIIFDHFQNIRQVLGNTNDADGDGP-----VTAVDVSPGSDYLVCGYQSGRIVLWDMIKGTSLKAVSDAHENPVVSLRFLKDQK-------------------------------------------PVLVSVDTNGLVNKLNFSKMMGMVYVVDVDPLYDG 309
BLAST of mRNA_P-canaliculata_contig10199.292.1 vs. uniprot
Match: H3GT40_PHYRM (Vps8 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GT40_PHYRM) HSP 1 Score: 152 bits (384), Expect = 3.990e-34 Identity = 98/285 (34.39%), Postives = 143/285 (50.18%), Query Frame = 3 Query: 1488 ALRKAESAELRLLRGGNRDVVSPLQVKRRMRAPTLTKAADQ------------------QSLGFPGVAGGGVNGGVGVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTTRGLILLFDHFQEIRHVLGSAAGGGSDGTPPDDSVTSLDMCVGSDTLVAGHASGRVLLWDYLRGVVLKTVTDIHSSAVVSVRCFVSRAGGGXXXXXXXXXXGAAGXXXXXMXXXXXIXXXXXXXXXXGSCDPAVITADVEGVVNKLSFRRVMWTKWVVDAECLLDG 2288
+L AE+ E +LL +++SPLQVKRR+RA +KA + G VA GVV++E ++A SRQL +N + ++GPG T A HSKFIA+GT++GL+++FDHFQ IR VLG+ DG VT++D+ GSD LV G+ SGR++LWD ++G LK V+D H + VVS+R + P +++ D G+VNKL+F ++M +VVD + L DG
Sbjct: 93 SLEIAEAREKQLLSCVGVELISPLQVKRRLRAHARSKALKSRREGLVAMKKNQRKKQIAEGAGATAVAVATEKKSTGVVKVEPMEAISRQLRKNIEFKEYGPGSPTVVAIHSKFIAIGTSKGLVIIFDHFQNIRQVLGNTNDADGDGP-----VTAVDVSPGSDYLVCGYQSGRIVLWDMIKGTSLKAVSDAHENPVVSLRFLKDQK-------------------------------------------PVLVSVDTNGLVNKLNFSKMMGMVYVVDVDPLYDG 329
BLAST of mRNA_P-canaliculata_contig10199.292.1 vs. uniprot
Match: G4Z679_PHYSP (Vps8 domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z679_PHYSP) HSP 1 Score: 152 bits (383), Expect = 4.720e-34 Identity = 98/282 (34.75%), Postives = 143/282 (50.71%), Query Frame = 3 Query: 1491 LRKAESAELRLLRGGNRDVVSPLQVKRRMRAPTLTKAADQQSLGFPGV------------AGGGVNG----GVGVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTTRGLILLFDHFQEIRHVLGSAAGGGSDGTPPDDSVTSLDMCVGSDTLVAGHASGRVLLWDYLRGVVLKTVTDIHSSAVVSVRCFVSRAGGGXXXXXXXXXXGAAGXXXXXMXXXXXIXXXXXXXXXXGSCDPAVITADVEGVVNKLSFRRVMWTKWVVDAECLLDG 2288
L AE+ E +LL +++SPLQVKRR+RA +KA + G + AG GVV++E ++A SRQL +N + ++GPG T A HSKFIA+GT++GL+++FDHFQ IR VLG+ DG VT++D+ GSD LV G+ SGR++LWD ++G LK V+D H + VVS+R + P +++ D G+VNKL+F ++M +VVD + L DG
Sbjct: 77 LEIAEAREKQLLSCVGVELISPLQVKRRLRAHARSKALKSRREGLVAMKKNQRKKQIAEGAGAAATATEKKSTGVVKVEPMEAISRQLRKNIEFKEYGPGSPTVVAIHSKFIAIGTSKGLVIIFDHFQNIRQVLGNTNDADGDGP-----VTAVDVSPGSDYLVCGYQSGRIVLWDMIKGTSLKAVSDAHENPVVSLRFLKDQK-------------------------------------------PVLVSVDTNGLVNKLNFSKMMGMVYVVDVDPLYDG 310
BLAST of mRNA_P-canaliculata_contig10199.292.1 vs. uniprot
Match: A0A3F2RY97_9STRA (Vps8 domain-containing protein n=22 Tax=Peronosporaceae TaxID=4777 RepID=A0A3F2RY97_9STRA) HSP 1 Score: 152 bits (383), Expect = 4.750e-34 Identity = 100/281 (35.59%), Postives = 143/281 (50.89%), Query Frame = 3 Query: 1491 LRKAESAELRLLRGGNRDVVSPLQVKRRMRAPTLTKAADQQSLGFPGVA----------GGGVNGGV-----GVVRMENLDAASRQLARNAAYGKHGPGVCTATAAHSKFIAVGTTRGLILLFDHFQEIRHVLGSAAGGGSDGTPPDDSVTSLDMCVGSDTLVAGHASGRVLLWDYLRGVVLKTVTDIHSSAVVSVRCFVSRAGGGXXXXXXXXXXGAAGXXXXXMXXXXXIXXXXXXXXXXGSCDPAVITADVEGVVNKLSFRRVMWTKWVVDAECLLDG 2288
L AE+ E +LL +++SPLQVKRR+RA +KA + G G VN GVV++E ++A SRQL +N + ++GPG T A HSKFIA GT++GL+++FDHFQ IR VLG+ SDG VT++D+ GSD LV G+ SGR++LWD ++G LK V+D H + VVS+R + P +++ D G+VNKL+F ++M +VVD + L DG
Sbjct: 97 LEIAEAREKQLLSCVRVELISPLQVKRRLRAHARSKALKSRHDGVVTTKKNERKKKIAEGTAVNANAEKKSTGVVKVEPMEAISRQLRKNIEFKEYGPGSPTVVAIHSKFIATGTSKGLVIIFDHFQNIRQVLGNTNDADSDGP-----VTAVDVSPGSDYLVCGYQSGRIVLWDMIKGTSLKAVSDAHENPVVSLRFLKDQK-------------------------------------------PVLVSVDTNGLVNKLNFSKMMGMVYVVDVDPLYDG 329 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10199.292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10199.292.1 >prot_P-canaliculata_contig10199.292.1 ID=prot_P-canaliculata_contig10199.292.1|Name=mRNA_P-canaliculata_contig10199.292.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=678bp MDQDVEAILNASDSEEDENLNVQGVSLEDILREDDGGFGEGDEDELLGAPback to top mRNA from alignment at P-canaliculata_contig10199:1664..10115+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10199.292.1 ID=mRNA_P-canaliculata_contig10199.292.1|Name=mRNA_P-canaliculata_contig10199.292.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=8452bp|location=Sequence derived from alignment at P-canaliculata_contig10199:1664..10115+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10199:1664..10115+ >mRNA_P-canaliculata_contig10199.292.1 ID=mRNA_P-canaliculata_contig10199.292.1|Name=mRNA_P-canaliculata_contig10199.292.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=4068bp|location=Sequence derived from alignment at P-canaliculata_contig10199:1664..10115+ (Pelvetia canaliculata dioecious)back to top |