mRNA_P-canaliculata_contig101956.287.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig101956.287.1
Unique NamemRNA_P-canaliculata_contig101956.287.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig101956.287.1 vs. uniprot
Match: A0A0S0GLI0_COSCS (Ycf66 n=28 Tax=Phaeophyceae TaxID=2870 RepID=A0A0S0GLI0_COSCS)

HSP 1 Score: 192 bits (488), Expect = 9.280e-62
Identity = 99/105 (94.29%), Postives = 104/105 (99.05%), Query Frame = 1
Query:    1 MVNIVFGANFLLGLIIILGVLIVYFLRIVRPELSRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAKKIKEKLNLPKIYSDK 315
            M+NIVFGANFLLGLIIILGVLI+YFLRI+RPELSRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAKKIKE+L LPKIYS+K
Sbjct:    1 MINIVFGANFLLGLIIILGVLILYFLRIIRPELSRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAKKIKEQLKLPKIYSNK 105          
BLAST of mRNA_P-canaliculata_contig101956.287.1 vs. uniprot
Match: A0A8F0F7Z8_9PHAE (Uncharacterized protein n=3 Tax=Phaeophyceae TaxID=2870 RepID=A0A8F0F7Z8_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 1.080e-60
Identity = 97/105 (92.38%), Postives = 103/105 (98.10%), Query Frame = 1
Query:    1 MVNIVFGANFLLGLIIILGVLIVYFLRIVRPELSRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAKKIKEKLNLPKIYSDK 315
            M+NI FGANFLLGLIIILGVLI+YFLRI+RPELSRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAKKIKE+L LPKIYS++
Sbjct:    1 MINIAFGANFLLGLIIILGVLILYFLRIIRPELSRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAKKIKEQLKLPKIYSNR 105          
BLAST of mRNA_P-canaliculata_contig101956.287.1 vs. uniprot
Match: A0A8E6D4V4_9PHAE (Uncharacterized protein n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D4V4_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 3.260e-56
Identity = 88/106 (83.02%), Postives = 99/106 (93.40%), Query Frame = 1
Query:    1 MVNIVFGANFLLGLIIILGVLIVYFLRIVRPELSRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAKKIKEKLNLPKIYSDKL 318
            MVNI FGANF+LGL+++ GVLI+YFLR+++PE++RDEDIFFTTLGLIY  ILIIHGWRLDPILLFSQVLLVS+ LAAGWENIRLRGLIAKKIKEKL LPKIY DKL
Sbjct:    1 MVNITFGANFILGLLVMTGVLILYFLRMIKPEVARDEDIFFTTLGLIYSCILIIHGWRLDPILLFSQVLLVSLCLAAGWENIRLRGLIAKKIKEKLKLPKIYEDKL 106          
BLAST of mRNA_P-canaliculata_contig101956.287.1 vs. uniprot
Match: A0A109QSJ6_9PHAE (Ycf66 n=13 Tax=Fucales TaxID=3009 RepID=A0A109QSJ6_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 7.490e-56
Identity = 89/102 (87.25%), Postives = 96/102 (94.12%), Query Frame = 1
Query:    1 MVNIVFGANFLLGLIIILGVLIVYFLRIVRPELSRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAKKIKEKLNLPKIY 306
            M+NIVFGANFLLGLIII+GVL++YFLRI+RPEL RDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVS+ L AGWENIRLRGLIAKKIKE+L LP  Y
Sbjct:    1 MINIVFGANFLLGLIIIIGVLLLYFLRIIRPELCRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSVVLVAGWENIRLRGLIAKKIKEQLELPDYY 102          
BLAST of mRNA_P-canaliculata_contig101956.287.1 vs. uniprot
Match: A0A141BSB5_9PHAE (Ycf66 n=3 Tax=Sargassum TaxID=3015 RepID=A0A141BSB5_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 3.050e-55
Identity = 88/102 (86.27%), Postives = 95/102 (93.14%), Query Frame = 1
Query:    1 MVNIVFGANFLLGLIIILGVLIVYFLRIVRPELSRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAKKIKEKLNLPKIY 306
            M+NIVFGANFLLGLI I+GVL++YFLRI+RPEL RDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVS+ L AGWENIRLRGLIAKKIKE+L LP  Y
Sbjct:    1 MINIVFGANFLLGLITIIGVLLLYFLRIIRPELCRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSVVLVAGWENIRLRGLIAKKIKEQLELPDFY 102          
BLAST of mRNA_P-canaliculata_contig101956.287.1 vs. uniprot
Match: D1J770_ECTSI (Uncharacterized protein ycf66 n=7 Tax=Ectocarpales TaxID=2877 RepID=D1J770_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 5.220e-52
Identity = 85/95 (89.47%), Postives = 92/95 (96.84%), Query Frame = 1
Query:    1 MVNIVFGANFLLGLIIILGVLIVYFLRIVRPELSRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAKKIKEK 285
            M+NIVFGANFLLGL+IILGVLI+YFLR VRPELSRDEDIFFTTLGLIYG+ILIIHGWRLDPILLFSQVLLVS+ LAAGWENIRLRGLIA K+K+K
Sbjct:    1 MINIVFGANFLLGLLIILGVLILYFLRSVRPELSRDEDIFFTTLGLIYGAILIIHGWRLDPILLFSQVLLVSLVLAAGWENIRLRGLIAAKLKKK 95          
BLAST of mRNA_P-canaliculata_contig101956.287.1 vs. uniprot
Match: A0A1N7TJI4_9PHAE (Ycf66 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1N7TJI4_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 7.770e-52
Identity = 85/107 (79.44%), Postives = 93/107 (86.92%), Query Frame = 1
Query:    1 MVNIVFGANFLLGLIIILGVLIVYFLRIVRPELSRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAKKIKEKLNLPKIYSDKLN 321
            M+NIVFGANFLLGLIII+GVL++YFLRI+RPEL RDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVS+ L AGWENIRLRGLIAKK++   N        LN
Sbjct:    1 MINIVFGANFLLGLIIIIGVLLLYFLRIIRPELCRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSVVLVAGWENIRLRGLIAKKLRNNYNYQTFILINLN 107          
BLAST of mRNA_P-canaliculata_contig101956.287.1 vs. uniprot
Match: A0A7S6ZP91_9STRA (Ycf66 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZP91_9STRA)

HSP 1 Score: 155 bits (393), Expect = 2.430e-47
Identity = 76/100 (76.00%), Postives = 89/100 (89.00%), Query Frame = 1
Query:    1 MVNIVFGANFLLGLIIILGVLIVYFLRIVRPELSRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAKKIKEKLNLPK 300
            M+NI FGAN +LG  +ILG+L++YF+RIVRPELSRDEDIFF TLGLIY  ILIIHGWRLDPILLFSQVL++SI L+ GWENIRLRGLIAKKIK+++  PK
Sbjct:    1 MINIGFGANLVLGFFVILGMLLLYFVRIVRPELSRDEDIFFATLGLIYSCILIIHGWRLDPILLFSQVLIISIILSTGWENIRLRGLIAKKIKDQITYPK 100          
BLAST of mRNA_P-canaliculata_contig101956.287.1 vs. uniprot
Match: B7T208_VAULI (Uncharacterized protein ycf66 n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T208_VAULI)

HSP 1 Score: 150 bits (378), Expect = 5.640e-45
Identity = 74/105 (70.48%), Postives = 91/105 (86.67%), Query Frame = 1
Query:    1 MVNIVFGANFLLGLIIILGVLIVYFLRIVRPELSRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAKKIKEKL-NLPKIYSD 312
            M+NI FG N +LG + ++GV ++Y +RIVRPELSRDEDIFFTTLGLIY  ILIIHGWRLDPILLFSQVL+++I+LAAGWENIRLRGL+AKKIK+++ N    YS+
Sbjct:    1 MINIGFGTNLILGFLFVIGVTLLYLVRIVRPELSRDEDIFFTTLGLIYSCILIIHGWRLDPILLFSQVLILAISLAAGWENIRLRGLVAKKIKDQIINATTEYSE 105          
BLAST of mRNA_P-canaliculata_contig101956.287.1 vs. uniprot
Match: A0A2U9NTG2_9STRA (Hypothetical chloroplast RF66 n=1 Tax=Acanthoceras zachariasii TaxID=451788 RepID=A0A2U9NTG2_9STRA)

HSP 1 Score: 137 bits (344), Expect = 6.900e-40
Identity = 66/97 (68.04%), Postives = 83/97 (85.57%), Query Frame = 1
Query:    1 MVNIVFGANFLLGLIIILGVLIVYFLRIVRPELSRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAK--KIKEK 285
            M+NI FG N +LGLI+  GV+++YFLR+V+PE++RDEDIFF T+GL+Y  ILI+HGWRLDPILLFSQVL++S  L AGWENIRLRGL+A   KIK+K
Sbjct:    1 MINIGFGPNIILGLILAFGVILLYFLRVVKPEVARDEDIFFATIGLLYSCILIVHGWRLDPILLFSQVLIISSLLVAGWENIRLRGLLANIAKIKKK 97          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101956.287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0S0GLI0_COSCS9.280e-6294.29Ycf66 n=28 Tax=Phaeophyceae TaxID=2870 RepID=A0A0S... [more]
A0A8F0F7Z8_9PHAE1.080e-6092.38Uncharacterized protein n=3 Tax=Phaeophyceae TaxID... [more]
A0A8E6D4V4_9PHAE3.260e-5683.02Uncharacterized protein n=1 Tax=Ishige okamurae Ta... [more]
A0A109QSJ6_9PHAE7.490e-5687.25Ycf66 n=13 Tax=Fucales TaxID=3009 RepID=A0A109QSJ6... [more]
A0A141BSB5_9PHAE3.050e-5586.27Ycf66 n=3 Tax=Sargassum TaxID=3015 RepID=A0A141BSB... [more]
D1J770_ECTSI5.220e-5289.47Uncharacterized protein ycf66 n=7 Tax=Ectocarpales... [more]
A0A1N7TJI4_9PHAE7.770e-5279.44Ycf66 n=1 Tax=Coccophora langsdorfii TaxID=74099 R... [more]
A0A7S6ZP91_9STRA2.430e-4776.00Ycf66 n=1 Tax=Schizocladia ischiensis TaxID=196139... [more]
B7T208_VAULI5.640e-4570.48Uncharacterized protein ycf66 n=1 Tax=Vaucheria li... [more]
A0A2U9NTG2_9STRA6.900e-4068.04Hypothetical chloroplast RF66 n=1 Tax=Acanthoceras... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101956contigP-canaliculata_contig101956:515..838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.0
Seed ortholog evalue9.7e-39
Seed eggNOG ortholog2880.D1J770
Preferred nameycf66
EggNOG free text desc.Ycf66 protein N-terminus
EggNOG OGs2901P@1,2SANI@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons1
Model size324
Cds size324
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.774293-CDS-P-canaliculata_contig101956:514..8381622815591.774293-CDS-P-canaliculata_contig101956:514..838Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101956 515..838 +
1693494154.7130766-CDS-P-canaliculata_contig101956:514..8381693494154.7130766-CDS-P-canaliculata_contig101956:514..838Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101956 515..838 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101956.287.1prot_P-canaliculata_contig101956.287.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig101956 515..838 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig101956.287.1

>prot_P-canaliculata_contig101956.287.1 ID=prot_P-canaliculata_contig101956.287.1|Name=mRNA_P-canaliculata_contig101956.287.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=108bp
MVNIVFGANFLLGLIIILGVLIVYFLRIVRPELSRDEDIFFTTLGLIYGS
ILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAKKIKEKLNLPK
IYSDKLN*
back to top

mRNA from alignment at P-canaliculata_contig101956:515..838+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101956.287.1 ID=mRNA_P-canaliculata_contig101956.287.1|Name=mRNA_P-canaliculata_contig101956.287.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=324bp|location=Sequence derived from alignment at P-canaliculata_contig101956:515..838+ (Pelvetia canaliculata dioecious)
ATGGTAAACATAGTATTTGGAGCAAATTTCCTTTTAGGTTTAATAATTAT TCTTGGGGTTTTAATTGTTTATTTTTTAAGGATTGTAAGACCAGAGCTTT CTCGTGATGAGGATATCTTTTTTACAACCTTAGGTTTAATTTATGGTTCT ATTTTAATTATCCATGGATGGAGACTTGATCCAATCTTATTGTTTAGTCA AGTTCTTTTAGTTAGTATTGCTTTGGCTGCTGGATGGGAAAATATTAGAC TTAGAGGTTTAATTGCAAAAAAAATTAAGGAAAAGTTAAATTTACCAAAA ATTTATTCTGATAAATTAAATTAA
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig101956:515..838+

>mRNA_P-canaliculata_contig101956.287.1 ID=mRNA_P-canaliculata_contig101956.287.1|Name=mRNA_P-canaliculata_contig101956.287.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at P-canaliculata_contig101956:515..838+ (Pelvetia canaliculata dioecious)
ATGGTAAACATAGTATTTGGAGCAAATTTCCTTTTAGGTTTAATAATTAT
TCTTGGGGTTTTAATTGTTTATTTTTTAAGGATTGTAAGACCAGAGCTTT
CTCGTGATGAGGATATCTTTTTTACAACCTTAGGTTTAATTTATGGTTCT
ATTTTAATTATCCATGGATGGAGACTTGATCCAATCTTATTGTTTAGTCA
AGTTCTTTTAGTTAGTATTGCTTTGGCTGCTGGATGGGAAAATATTAGAC
TTAGAGGTTTAATTGCAAAAAAAATTAAGGAAAAGTTAAATTTACCAAAA
ATTTATTCTGATAAATTAAATTAAATGGTAAACATAGTATTTGGAGCAAA
TTTCCTTTTAGGTTTAATAATTATTCTTGGGGTTTTAATTGTTTATTTTT
TAAGGATTGTAAGACCAGAGCTTTCTCGTGATGAGGATATCTTTTTTACA
ACCTTAGGTTTAATTTATGGTTCTATTTTAATTATCCATGGATGGAGACT
TGATCCAATCTTATTGTTTAGTCAAGTTCTTTTAGTTAGTATTGCTTTGG
CTGCTGGATGGGAAAATATTAGACTTAGAGGTTTAATTGCAAAAAAAATT
AAGGAAAAGTTAAATTTACCAAAAATTTATTCTGATAAATTAAATTAA
back to top