mRNA_P-canaliculata_contig101956.287.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_P-canaliculata_contig101956.287.1 vs. uniprot
Match: A0A0S0GLI0_COSCS (Ycf66 n=28 Tax=Phaeophyceae TaxID=2870 RepID=A0A0S0GLI0_COSCS) HSP 1 Score: 192 bits (488), Expect = 9.280e-62 Identity = 99/105 (94.29%), Postives = 104/105 (99.05%), Query Frame = 1 Query: 1 MVNIVFGANFLLGLIIILGVLIVYFLRIVRPELSRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAKKIKEKLNLPKIYSDK 315
M+NIVFGANFLLGLIIILGVLI+YFLRI+RPELSRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAKKIKE+L LPKIYS+K
Sbjct: 1 MINIVFGANFLLGLIIILGVLILYFLRIIRPELSRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAKKIKEQLKLPKIYSNK 105
BLAST of mRNA_P-canaliculata_contig101956.287.1 vs. uniprot
Match: A0A8F0F7Z8_9PHAE (Uncharacterized protein n=3 Tax=Phaeophyceae TaxID=2870 RepID=A0A8F0F7Z8_9PHAE) HSP 1 Score: 189 bits (481), Expect = 1.080e-60 Identity = 97/105 (92.38%), Postives = 103/105 (98.10%), Query Frame = 1 Query: 1 MVNIVFGANFLLGLIIILGVLIVYFLRIVRPELSRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAKKIKEKLNLPKIYSDK 315
M+NI FGANFLLGLIIILGVLI+YFLRI+RPELSRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAKKIKE+L LPKIYS++
Sbjct: 1 MINIAFGANFLLGLIIILGVLILYFLRIIRPELSRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAKKIKEQLKLPKIYSNR 105
BLAST of mRNA_P-canaliculata_contig101956.287.1 vs. uniprot
Match: A0A8E6D4V4_9PHAE (Uncharacterized protein n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D4V4_9PHAE) HSP 1 Score: 178 bits (452), Expect = 3.260e-56 Identity = 88/106 (83.02%), Postives = 99/106 (93.40%), Query Frame = 1 Query: 1 MVNIVFGANFLLGLIIILGVLIVYFLRIVRPELSRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAKKIKEKLNLPKIYSDKL 318
MVNI FGANF+LGL+++ GVLI+YFLR+++PE++RDEDIFFTTLGLIY ILIIHGWRLDPILLFSQVLLVS+ LAAGWENIRLRGLIAKKIKEKL LPKIY DKL
Sbjct: 1 MVNITFGANFILGLLVMTGVLILYFLRMIKPEVARDEDIFFTTLGLIYSCILIIHGWRLDPILLFSQVLLVSLCLAAGWENIRLRGLIAKKIKEKLKLPKIYEDKL 106
BLAST of mRNA_P-canaliculata_contig101956.287.1 vs. uniprot
Match: A0A109QSJ6_9PHAE (Ycf66 n=13 Tax=Fucales TaxID=3009 RepID=A0A109QSJ6_9PHAE) HSP 1 Score: 177 bits (449), Expect = 7.490e-56 Identity = 89/102 (87.25%), Postives = 96/102 (94.12%), Query Frame = 1 Query: 1 MVNIVFGANFLLGLIIILGVLIVYFLRIVRPELSRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAKKIKEKLNLPKIY 306
M+NIVFGANFLLGLIII+GVL++YFLRI+RPEL RDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVS+ L AGWENIRLRGLIAKKIKE+L LP Y
Sbjct: 1 MINIVFGANFLLGLIIIIGVLLLYFLRIIRPELCRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSVVLVAGWENIRLRGLIAKKIKEQLELPDYY 102
BLAST of mRNA_P-canaliculata_contig101956.287.1 vs. uniprot
Match: A0A141BSB5_9PHAE (Ycf66 n=3 Tax=Sargassum TaxID=3015 RepID=A0A141BSB5_9PHAE) HSP 1 Score: 176 bits (445), Expect = 3.050e-55 Identity = 88/102 (86.27%), Postives = 95/102 (93.14%), Query Frame = 1 Query: 1 MVNIVFGANFLLGLIIILGVLIVYFLRIVRPELSRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAKKIKEKLNLPKIY 306
M+NIVFGANFLLGLI I+GVL++YFLRI+RPEL RDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVS+ L AGWENIRLRGLIAKKIKE+L LP Y
Sbjct: 1 MINIVFGANFLLGLITIIGVLLLYFLRIIRPELCRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSVVLVAGWENIRLRGLIAKKIKEQLELPDFY 102
BLAST of mRNA_P-canaliculata_contig101956.287.1 vs. uniprot
Match: D1J770_ECTSI (Uncharacterized protein ycf66 n=7 Tax=Ectocarpales TaxID=2877 RepID=D1J770_ECTSI) HSP 1 Score: 167 bits (423), Expect = 5.220e-52 Identity = 85/95 (89.47%), Postives = 92/95 (96.84%), Query Frame = 1 Query: 1 MVNIVFGANFLLGLIIILGVLIVYFLRIVRPELSRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAKKIKEK 285
M+NIVFGANFLLGL+IILGVLI+YFLR VRPELSRDEDIFFTTLGLIYG+ILIIHGWRLDPILLFSQVLLVS+ LAAGWENIRLRGLIA K+K+K
Sbjct: 1 MINIVFGANFLLGLLIILGVLILYFLRSVRPELSRDEDIFFTTLGLIYGAILIIHGWRLDPILLFSQVLLVSLVLAAGWENIRLRGLIAAKLKKK 95
BLAST of mRNA_P-canaliculata_contig101956.287.1 vs. uniprot
Match: A0A1N7TJI4_9PHAE (Ycf66 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1N7TJI4_9PHAE) HSP 1 Score: 167 bits (424), Expect = 7.770e-52 Identity = 85/107 (79.44%), Postives = 93/107 (86.92%), Query Frame = 1 Query: 1 MVNIVFGANFLLGLIIILGVLIVYFLRIVRPELSRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAKKIKEKLNLPKIYSDKLN 321
M+NIVFGANFLLGLIII+GVL++YFLRI+RPEL RDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVS+ L AGWENIRLRGLIAKK++ N LN
Sbjct: 1 MINIVFGANFLLGLIIIIGVLLLYFLRIIRPELCRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSVVLVAGWENIRLRGLIAKKLRNNYNYQTFILINLN 107
BLAST of mRNA_P-canaliculata_contig101956.287.1 vs. uniprot
Match: A0A7S6ZP91_9STRA (Ycf66 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZP91_9STRA) HSP 1 Score: 155 bits (393), Expect = 2.430e-47 Identity = 76/100 (76.00%), Postives = 89/100 (89.00%), Query Frame = 1 Query: 1 MVNIVFGANFLLGLIIILGVLIVYFLRIVRPELSRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAKKIKEKLNLPK 300
M+NI FGAN +LG +ILG+L++YF+RIVRPELSRDEDIFF TLGLIY ILIIHGWRLDPILLFSQVL++SI L+ GWENIRLRGLIAKKIK+++ PK
Sbjct: 1 MINIGFGANLVLGFFVILGMLLLYFVRIVRPELSRDEDIFFATLGLIYSCILIIHGWRLDPILLFSQVLIISIILSTGWENIRLRGLIAKKIKDQITYPK 100
BLAST of mRNA_P-canaliculata_contig101956.287.1 vs. uniprot
Match: B7T208_VAULI (Uncharacterized protein ycf66 n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T208_VAULI) HSP 1 Score: 150 bits (378), Expect = 5.640e-45 Identity = 74/105 (70.48%), Postives = 91/105 (86.67%), Query Frame = 1 Query: 1 MVNIVFGANFLLGLIIILGVLIVYFLRIVRPELSRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAKKIKEKL-NLPKIYSD 312
M+NI FG N +LG + ++GV ++Y +RIVRPELSRDEDIFFTTLGLIY ILIIHGWRLDPILLFSQVL+++I+LAAGWENIRLRGL+AKKIK+++ N YS+
Sbjct: 1 MINIGFGTNLILGFLFVIGVTLLYLVRIVRPELSRDEDIFFTTLGLIYSCILIIHGWRLDPILLFSQVLILAISLAAGWENIRLRGLVAKKIKDQIINATTEYSE 105
BLAST of mRNA_P-canaliculata_contig101956.287.1 vs. uniprot
Match: A0A2U9NTG2_9STRA (Hypothetical chloroplast RF66 n=1 Tax=Acanthoceras zachariasii TaxID=451788 RepID=A0A2U9NTG2_9STRA) HSP 1 Score: 137 bits (344), Expect = 6.900e-40 Identity = 66/97 (68.04%), Postives = 83/97 (85.57%), Query Frame = 1 Query: 1 MVNIVFGANFLLGLIIILGVLIVYFLRIVRPELSRDEDIFFTTLGLIYGSILIIHGWRLDPILLFSQVLLVSIALAAGWENIRLRGLIAK--KIKEK 285
M+NI FG N +LGLI+ GV+++YFLR+V+PE++RDEDIFF T+GL+Y ILI+HGWRLDPILLFSQVL++S L AGWENIRLRGL+A KIK+K
Sbjct: 1 MINIGFGPNIILGLILAFGVILLYFLRVVKPEVARDEDIFFATIGLLYSCILIVHGWRLDPILLFSQVLIISSLLVAGWENIRLRGLLANIAKIKKK 97 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101956.287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig101956.287.1 >prot_P-canaliculata_contig101956.287.1 ID=prot_P-canaliculata_contig101956.287.1|Name=mRNA_P-canaliculata_contig101956.287.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=108bp MVNIVFGANFLLGLIIILGVLIVYFLRIVRPELSRDEDIFFTTLGLIYGSback to top mRNA from alignment at P-canaliculata_contig101956:515..838+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig101956.287.1 ID=mRNA_P-canaliculata_contig101956.287.1|Name=mRNA_P-canaliculata_contig101956.287.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=324bp|location=Sequence derived from alignment at P-canaliculata_contig101956:515..838+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig101956:515..838+ >mRNA_P-canaliculata_contig101956.287.1 ID=mRNA_P-canaliculata_contig101956.287.1|Name=mRNA_P-canaliculata_contig101956.287.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at P-canaliculata_contig101956:515..838+ (Pelvetia canaliculata dioecious)back to top |