mRNA_P-canaliculata_contig101956.286.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig101956.286.1
Unique NamemRNA_P-canaliculata_contig101956.286.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig101956.286.1 vs. uniprot
Match: D1J769_ECTSI (Photosystem II reaction center X protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J769_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 3.790e-17
Identity = 39/43 (90.70%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:    1 MTPSLTNFLTSLIAGGLIVVLPISFALFFVSKKDALTRVPTKK 129
            MTPSLTNFL+SLIAGGL+VVLPISFALFFVSKKDALTRV +KK
Sbjct:    1 MTPSLTNFLSSLIAGGLVVVLPISFALFFVSKKDALTRVSSKK 43
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BLAST of mRNA_P-canaliculata_contig101956.286.1 vs. uniprot
Match: A0A6G6D7E9_ECTSI (Photosystem II reaction center X protein n=29 Tax=Phaeophyceae TaxID=2870 RepID=A0A6G6D7E9_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 3.130e-16
Identity = 38/43 (88.37%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:    1 MTPSLTNFLTSLIAGGLIVVLPISFALFFVSKKDALTRVPTKK 129
            MTPSLTNFL+SLIAGGL+VVLPIS ALFFVSKKDALTRV +KK
Sbjct:    1 MTPSLTNFLSSLIAGGLVVVLPISLALFFVSKKDALTRVSSKK 43
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BLAST of mRNA_P-canaliculata_contig101956.286.1 vs. uniprot
Match: A0A8F0F7I0_9PHAE (Photosystem II reaction center X protein n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7I0_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 3.130e-16
Identity = 37/43 (86.05%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:    1 MTPSLTNFLTSLIAGGLIVVLPISFALFFVSKKDALTRVPTKK 129
            MTPSLTNFL+SL+AGGLIVVLPIS ALFFVS+KDALTR+P KK
Sbjct:    1 MTPSLTNFLSSLLAGGLIVVLPISLALFFVSQKDALTRIPIKK 43
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BLAST of mRNA_P-canaliculata_contig101956.286.1 vs. uniprot
Match: A0A344PF83_9PHAE (Photosystem II reaction center X protein n=5 Tax=Ectocarpales TaxID=2877 RepID=A0A344PF83_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 5.210e-15
Identity = 36/43 (83.72%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 MTPSLTNFLTSLIAGGLIVVLPISFALFFVSKKDALTRVPTKK 129
            MTPSLTNFL+SL+AGGLIVVLPIS ALFFVS+KDA+TRV  KK
Sbjct:    1 MTPSLTNFLSSLVAGGLIVVLPISLALFFVSQKDAITRVSPKK 43
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BLAST of mRNA_P-canaliculata_contig101956.286.1 vs. uniprot
Match: A0A2R4QPT4_9PHAE (Photosystem II reaction center X protein n=2 Tax=Fucus TaxID=3011 RepID=A0A2R4QPT4_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.750e-13
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    1 MTPSLTNFLTSLIAGGLIVVLPISFALFFVSKKDALTRVPTKK 129
            MTPSLTNF  SLIAGGLIVVLPI+ AL FVS+KD+LTRVP KK
Sbjct:    1 MTPSLTNFFYSLIAGGLIVVLPITLALSFVSQKDSLTRVPPKK 43
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BLAST of mRNA_P-canaliculata_contig101956.286.1 vs. uniprot
Match: A0A1L2F1S9_9PHAE (Photosystem II reaction center X protein n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A1L2F1S9_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 5.040e-13
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    1 MTPSLTNFLTSLIAGGLIVVLPISFALFFVSKKDALTRVPTKK 129
            MTPSL NFL SLIAGG+IVVLPI+ AL FVS+KDA+TRVP KK
Sbjct:    1 MTPSLANFLYSLIAGGIIVVLPITVALSFVSQKDAITRVPPKK 43
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BLAST of mRNA_P-canaliculata_contig101956.286.1 vs. uniprot
Match: A0A2I4Q2Y0_9PHAE (Photosystem II reaction center X protein n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2Y0_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.550e-10
Identity = 32/43 (74.42%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 MTPSLTNFLTSLIAGGLIVVLPISFALFFVSKKDALTRVPTKK 129
            MT SLTNFL SLIAGG+IVV PI+ AL FVSKKDA+ RVP  K
Sbjct:    1 MTSSLTNFLLSLIAGGIIVVGPITLALLFVSKKDAIIRVPQGK 43
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BLAST of mRNA_P-canaliculata_contig101956.286.1 vs. uniprot
Match: A0A6P0NFK4_9CYAN (Photosystem II reaction center X protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0NFK4_9CYAN)

HSP 1 Score: 57.8 bits (138), Expect = 3.140e-10
Identity = 30/43 (69.77%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 MTPSLTNFLTSLIAGGLIVVLPISFALFFVSKKDALTRVPTKK 129
            MT SLTNFL SL+AGG IVV+PI+ AL FVS+KDA+ RVP  K
Sbjct:    1 MTSSLTNFLLSLVAGGAIVVIPITLALLFVSQKDAIIRVPQGK 43
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BLAST of mRNA_P-canaliculata_contig101956.286.1 vs. uniprot
Match: A0A7S6U9U3_9STRA (Photosystem II reaction center X protein n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9U3_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 5.110e-9
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    1 MTPSLTNFLTSLIAGGLIVVLPISFALFFVSKKDALTRVPTKK 129
            MT SL+NFL SLI GGL+VV+PIS AL FVS+KD +TR P  K
Sbjct:    1 MTASLSNFLLSLITGGLVVVVPISLALIFVSQKDQVTRRPPVK 43
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BLAST of mRNA_P-canaliculata_contig101956.286.1 vs. uniprot
Match: A0A1C9CCW8_9RHOD (Photosystem II reaction center X protein n=1 Tax=Bangiopsis subsimplex TaxID=139980 RepID=A0A1C9CCW8_9RHOD)

HSP 1 Score: 51.2 bits (121), Expect = 1.030e-7
Identity = 27/38 (71.05%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 MTPSLTNFLTSLIAGGLIVVLPISFALFFVSKKDALTR 114
            MTPSL NF +SLI G +IVVLPI+ AL FVS+KD LTR
Sbjct:    1 MTPSLANFFSSLILGAVIVVLPITAALLFVSQKDRLTR 38
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101956.286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J769_ECTSI3.790e-1790.70Photosystem II reaction center X protein n=1 Tax=E... [more]
A0A6G6D7E9_ECTSI3.130e-1688.37Photosystem II reaction center X protein n=29 Tax=... [more]
A0A8F0F7I0_9PHAE3.130e-1686.05Photosystem II reaction center X protein n=1 Tax=P... [more]
A0A344PF83_9PHAE5.210e-1583.72Photosystem II reaction center X protein n=5 Tax=E... [more]
A0A2R4QPT4_9PHAE1.750e-1381.40Photosystem II reaction center X protein n=2 Tax=F... [more]
A0A1L2F1S9_9PHAE5.040e-1379.07Photosystem II reaction center X protein n=14 Tax=... [more]
A0A2I4Q2Y0_9PHAE1.550e-1074.42Photosystem II reaction center X protein n=1 Tax=D... [more]
A0A6P0NFK4_9CYAN3.140e-1069.77Photosystem II reaction center X protein n=1 Tax=M... [more]
A0A7S6U9U3_9STRA5.110e-967.44Photosystem II reaction center X protein n=1 Tax=S... [more]
A0A1C9CCW8_9RHOD1.030e-771.05Photosystem II reaction center X protein n=1 Tax=B... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101956contigP-canaliculata_contig101956:269..400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size132
Cds size132
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.7415802-CDS-P-canaliculata_contig101956:268..4001622815591.7415802-CDS-P-canaliculata_contig101956:268..400Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101956 269..400 +
1693494154.6989172-CDS-P-canaliculata_contig101956:268..4001693494154.6989172-CDS-P-canaliculata_contig101956:268..400Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101956 269..400 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101956.286.1prot_P-canaliculata_contig101956.286.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig101956 269..400 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig101956.286.1

>prot_P-canaliculata_contig101956.286.1 ID=prot_P-canaliculata_contig101956.286.1|Name=mRNA_P-canaliculata_contig101956.286.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=44bp
MTPSLTNFLTSLIAGGLIVVLPISFALFFVSKKDALTRVPTKK*
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mRNA from alignment at P-canaliculata_contig101956:269..400+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101956.286.1 ID=mRNA_P-canaliculata_contig101956.286.1|Name=mRNA_P-canaliculata_contig101956.286.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=132bp|location=Sequence derived from alignment at P-canaliculata_contig101956:269..400+ (Pelvetia canaliculata dioecious)
ATGACACCATCTTTAACAAATTTTTTAACTAGCTTAATTGCTGGTGGGTT
AATTGTAGTTTTACCTATTAGTTTTGCATTATTTTTTGTGAGTAAAAAAG
ACGCGTTAACGCGTGTACCAACAAAAAAATAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig101956:269..400+

>mRNA_P-canaliculata_contig101956.286.1 ID=mRNA_P-canaliculata_contig101956.286.1|Name=mRNA_P-canaliculata_contig101956.286.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at P-canaliculata_contig101956:269..400+ (Pelvetia canaliculata dioecious)
ATGACACCATCTTTAACAAATTTTTTAACTAGCTTAATTGCTGGTGGGTT
AATTGTAGTTTTACCTATTAGTTTTGCATTATTTTTTGTGAGTAAAAAAG
ACGCGTTAACGCGTGTACCAACAAAAAAATAGATGACACCATCTTTAACA
AATTTTTTAACTAGCTTAATTGCTGGTGGGTTAATTGTAGTTTTACCTAT
TAGTTTTGCATTATTTTTTGTGAGTAAAAAAGACGCGTTAACGCGTGTAC
CAACAAAAAAATAG
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