mRNA_P-canaliculata_contig101956.286.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig101956.286.1 vs. uniprot
Match: D1J769_ECTSI (Photosystem II reaction center X protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J769_ECTSI) HSP 1 Score: 75.1 bits (183), Expect = 3.790e-17 Identity = 39/43 (90.70%), Postives = 42/43 (97.67%), Query Frame = 1 Query: 1 MTPSLTNFLTSLIAGGLIVVLPISFALFFVSKKDALTRVPTKK 129 MTPSLTNFL+SLIAGGL+VVLPISFALFFVSKKDALTRV +KK Sbjct: 1 MTPSLTNFLSSLIAGGLVVVLPISFALFFVSKKDALTRVSSKK 43
BLAST of mRNA_P-canaliculata_contig101956.286.1 vs. uniprot
Match: A0A6G6D7E9_ECTSI (Photosystem II reaction center X protein n=29 Tax=Phaeophyceae TaxID=2870 RepID=A0A6G6D7E9_ECTSI) HSP 1 Score: 72.8 bits (177), Expect = 3.130e-16 Identity = 38/43 (88.37%), Postives = 41/43 (95.35%), Query Frame = 1 Query: 1 MTPSLTNFLTSLIAGGLIVVLPISFALFFVSKKDALTRVPTKK 129 MTPSLTNFL+SLIAGGL+VVLPIS ALFFVSKKDALTRV +KK Sbjct: 1 MTPSLTNFLSSLIAGGLVVVLPISLALFFVSKKDALTRVSSKK 43
BLAST of mRNA_P-canaliculata_contig101956.286.1 vs. uniprot
Match: A0A8F0F7I0_9PHAE (Photosystem II reaction center X protein n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7I0_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 3.130e-16 Identity = 37/43 (86.05%), Postives = 41/43 (95.35%), Query Frame = 1 Query: 1 MTPSLTNFLTSLIAGGLIVVLPISFALFFVSKKDALTRVPTKK 129 MTPSLTNFL+SL+AGGLIVVLPIS ALFFVS+KDALTR+P KK Sbjct: 1 MTPSLTNFLSSLLAGGLIVVLPISLALFFVSQKDALTRIPIKK 43
BLAST of mRNA_P-canaliculata_contig101956.286.1 vs. uniprot
Match: A0A344PF83_9PHAE (Photosystem II reaction center X protein n=5 Tax=Ectocarpales TaxID=2877 RepID=A0A344PF83_9PHAE) HSP 1 Score: 69.7 bits (169), Expect = 5.210e-15 Identity = 36/43 (83.72%), Postives = 40/43 (93.02%), Query Frame = 1 Query: 1 MTPSLTNFLTSLIAGGLIVVLPISFALFFVSKKDALTRVPTKK 129 MTPSLTNFL+SL+AGGLIVVLPIS ALFFVS+KDA+TRV KK Sbjct: 1 MTPSLTNFLSSLVAGGLIVVLPISLALFFVSQKDAITRVSPKK 43
BLAST of mRNA_P-canaliculata_contig101956.286.1 vs. uniprot
Match: A0A2R4QPT4_9PHAE (Photosystem II reaction center X protein n=2 Tax=Fucus TaxID=3011 RepID=A0A2R4QPT4_9PHAE) HSP 1 Score: 65.9 bits (159), Expect = 1.750e-13 Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 1 Query: 1 MTPSLTNFLTSLIAGGLIVVLPISFALFFVSKKDALTRVPTKK 129 MTPSLTNF SLIAGGLIVVLPI+ AL FVS+KD+LTRVP KK Sbjct: 1 MTPSLTNFFYSLIAGGLIVVLPITLALSFVSQKDSLTRVPPKK 43
BLAST of mRNA_P-canaliculata_contig101956.286.1 vs. uniprot
Match: A0A1L2F1S9_9PHAE (Photosystem II reaction center X protein n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A1L2F1S9_9PHAE) HSP 1 Score: 64.7 bits (156), Expect = 5.040e-13 Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 1 Query: 1 MTPSLTNFLTSLIAGGLIVVLPISFALFFVSKKDALTRVPTKK 129 MTPSL NFL SLIAGG+IVVLPI+ AL FVS+KDA+TRVP KK Sbjct: 1 MTPSLANFLYSLIAGGIIVVLPITVALSFVSQKDAITRVPPKK 43
BLAST of mRNA_P-canaliculata_contig101956.286.1 vs. uniprot
Match: A0A2I4Q2Y0_9PHAE (Photosystem II reaction center X protein n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2Y0_9PHAE) HSP 1 Score: 58.5 bits (140), Expect = 1.550e-10 Identity = 32/43 (74.42%), Postives = 35/43 (81.40%), Query Frame = 1 Query: 1 MTPSLTNFLTSLIAGGLIVVLPISFALFFVSKKDALTRVPTKK 129 MT SLTNFL SLIAGG+IVV PI+ AL FVSKKDA+ RVP K Sbjct: 1 MTSSLTNFLLSLIAGGIIVVGPITLALLFVSKKDAIIRVPQGK 43
BLAST of mRNA_P-canaliculata_contig101956.286.1 vs. uniprot
Match: A0A6P0NFK4_9CYAN (Photosystem II reaction center X protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0NFK4_9CYAN) HSP 1 Score: 57.8 bits (138), Expect = 3.140e-10 Identity = 30/43 (69.77%), Postives = 35/43 (81.40%), Query Frame = 1 Query: 1 MTPSLTNFLTSLIAGGLIVVLPISFALFFVSKKDALTRVPTKK 129 MT SLTNFL SL+AGG IVV+PI+ AL FVS+KDA+ RVP K Sbjct: 1 MTSSLTNFLLSLVAGGAIVVIPITLALLFVSQKDAIIRVPQGK 43
BLAST of mRNA_P-canaliculata_contig101956.286.1 vs. uniprot
Match: A0A7S6U9U3_9STRA (Photosystem II reaction center X protein n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9U3_9STRA) HSP 1 Score: 54.7 bits (130), Expect = 5.110e-9 Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 1 Query: 1 MTPSLTNFLTSLIAGGLIVVLPISFALFFVSKKDALTRVPTKK 129 MT SL+NFL SLI GGL+VV+PIS AL FVS+KD +TR P K Sbjct: 1 MTASLSNFLLSLITGGLVVVVPISLALIFVSQKDQVTRRPPVK 43
BLAST of mRNA_P-canaliculata_contig101956.286.1 vs. uniprot
Match: A0A1C9CCW8_9RHOD (Photosystem II reaction center X protein n=1 Tax=Bangiopsis subsimplex TaxID=139980 RepID=A0A1C9CCW8_9RHOD) HSP 1 Score: 51.2 bits (121), Expect = 1.030e-7 Identity = 27/38 (71.05%), Postives = 31/38 (81.58%), Query Frame = 1 Query: 1 MTPSLTNFLTSLIAGGLIVVLPISFALFFVSKKDALTR 114 MTPSL NF +SLI G +IVVLPI+ AL FVS+KD LTR Sbjct: 1 MTPSLANFFSSLILGAVIVVLPITAALLFVSQKDRLTR 38 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101956.286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig101956.286.1 >prot_P-canaliculata_contig101956.286.1 ID=prot_P-canaliculata_contig101956.286.1|Name=mRNA_P-canaliculata_contig101956.286.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=44bp MTPSLTNFLTSLIAGGLIVVLPISFALFFVSKKDALTRVPTKK*back to top mRNA from alignment at P-canaliculata_contig101956:269..400+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig101956.286.1 ID=mRNA_P-canaliculata_contig101956.286.1|Name=mRNA_P-canaliculata_contig101956.286.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=132bp|location=Sequence derived from alignment at P-canaliculata_contig101956:269..400+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig101956:269..400+ >mRNA_P-canaliculata_contig101956.286.1 ID=mRNA_P-canaliculata_contig101956.286.1|Name=mRNA_P-canaliculata_contig101956.286.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at P-canaliculata_contig101956:269..400+ (Pelvetia canaliculata dioecious)back to top |