mRNA_P-canaliculata_contig101935.283.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig101935.283.1
Unique NamemRNA_P-canaliculata_contig101935.283.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig101935.283.1 vs. uniprot
Match: UPI00198C3A71 (Uncharacterized protein n=2 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI00198C3A71)

HSP 1 Score: 194 bits (494), Expect = 4.640e-62
Identity = 96/121 (79.34%), Postives = 107/121 (88.43%), Query Frame = 1
Query:    1 MTDSSEIDFDHLNQYVSGDPDLTREVFGLFRNQVEMWGRGLTADADDDMWANVTHSLKGSARAVGAMGLAEACEKAEELVGDDRRPGAREVSVQTLEQRIEQVLNEIIRWEYKDDMRRLRS 363
            MTDS EIDFDHLN+YV GD DLTREVFGLFRNQVEMWGRGL AD+DD++W++V HSLKGSARAVGAM LA  CE AE L+GDDRRPGAREV+V+ LE RI QVL+EI RWEYKDDMRRL+S
Sbjct:   11 MTDSPEIDFDHLNRYVGGDADLTREVFGLFRNQVEMWGRGLRADSDDEVWSSVAHSLKGSARAVGAMELANLCEGAETLIGDDRRPGAREVAVEKLEHRISQVLDEIARWEYKDDMRRLKS 131          
BLAST of mRNA_P-canaliculata_contig101935.283.1 vs. uniprot
Match: UPI00041CDFAB (Hpt domain-containing protein n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI00041CDFAB)

HSP 1 Score: 149 bits (376), Expect = 3.480e-44
Identity = 72/115 (62.61%), Postives = 90/115 (78.26%), Query Frame = 1
Query:   16 EIDFDHLNQYVSGDPDLTREVFGLFRNQVEMWGRGLTADADDDMWANVTHSLKGSARAVGAMGLAEACEKAEELVGDDRRPGAREVSVQTLEQRIEQVLNEIIRWEYKDDMRRLR 360
            EIDF+HLNQYV GD  LT EVFGLF++QVEMWGR L  DADD+ WA+VTHSL+G+A AVGA  LA+ CE AE+LVGD  RPG REV++Q +E RI + + EI RWEY+  + ++R
Sbjct:    9 EIDFNHLNQYVGGDKSLTAEVFGLFKHQVEMWGRALIVDADDETWASVTHSLRGTALAVGATKLAQLCENAEDLVGDGNRPGGREVALQNIEFRISRTMAEIQRWEYRQTLNQMR 123          
BLAST of mRNA_P-canaliculata_contig101935.283.1 vs. uniprot
Match: A0A8J3CNE6_9PROT (HPt domain-containing protein n=1 Tax=Algimonas arctica TaxID=1479486 RepID=A0A8J3CNE6_9PROT)

HSP 1 Score: 145 bits (367), Expect = 7.200e-43
Identity = 73/115 (63.48%), Postives = 89/115 (77.39%), Query Frame = 1
Query:   16 EIDFDHLNQYVSGDPDLTREVFGLFRNQVEMWGRGLTADADDDMWANVTHSLKGSARAVGAMGLAEACEKAEELVGDDRRPGAREVSVQTLEQRIEQVLNEIIRWEYKDDMRRLR 360
            +IDFDHLN+YV GD  LTRE+FGLF +Q EMWGRGL   +DDD+W +VTHSLKGSA+AVGA+ LA  CE AE LVGD RR GAR+V+VQ +E  IEQ+  EI RWE+   ++ LR
Sbjct:    5 QIDFDHLNKYVGGDVALTREIFGLFVHQTEMWGRGLDPASDDDVWESVTHSLKGSAKAVGAVNLATLCEAAEALVGDKRRMGARDVAVQNIEFAIEQIRTEIQRWEHAQSLKDLR 119          
BLAST of mRNA_P-canaliculata_contig101935.283.1 vs. uniprot
Match: A0A420WK33_9PROT (Hpt domain-containing protein n=2 Tax=Litorimonas taeanensis TaxID=568099 RepID=A0A420WK33_9PROT)

HSP 1 Score: 146 bits (369), Expect = 1.020e-42
Identity = 73/119 (61.34%), Postives = 91/119 (76.47%), Query Frame = 1
Query:   10 SSEIDFDHLNQYVSGDPDLTREVFGLFRNQVEMWGRGLTADADDDMWANVTHSLKGSARAVGAMGLAEACEKAEELVGDDRRPGAREVSVQTLEQRIEQVLNEIIRWEYKDDMRRLRSS 366
            S EIDF+HLNQYV GD  LT+EVFGLF++QVEMWGR L   ADDD W +V HSLKGSA+AVGA GLAE CE+AE+LVG+ +  G R V+VQ +E +I + + EI RWEY+  +  +RSS
Sbjct:   37 SHEIDFEHLNQYVQGDISLTKEVFGLFKHQVEMWGRLLDPAADDDSWGSVIHSLKGSAKAVGATGLAERCERAEQLVGETKTAGGRLVAVQDIEFKISRTITEIQRWEYRQKLNEMRSS 155          
BLAST of mRNA_P-canaliculata_contig101935.283.1 vs. uniprot
Match: A0A848V4L3_9PROT (Hpt domain-containing protein n=1 Tax=Hellea sp. TaxID=2715692 RepID=A0A848V4L3_9PROT)

HSP 1 Score: 143 bits (361), Expect = 6.670e-42
Identity = 64/120 (53.33%), Postives = 94/120 (78.33%), Query Frame = 1
Query:    4 TDSSEIDFDHLNQYVSGDPDLTREVFGLFRNQVEMWGRGLTADADDDMWANVTHSLKGSARAVGAMGLAEACEKAEELVGDDRRPGAREVSVQTLEQRIEQVLNEIIRWEYKDDMRRLRS 363
            T+++ IDFDHL QYV  DP +T E+FGLF+NQV++W   L +D DDD WA +THS+KG+ARA+GA  LA+ CE+AE L+G+ +RPGAREVSV+ ++  I++++ EI RWEY+  + +++S
Sbjct:    3 TENTHIDFDHLRQYVGDDPAMTAEIFGLFKNQVDLWSPSLVSDLDDDAWAMMTHSIKGTARAIGAFELADLCEQAELLIGEGKRPGAREVSVEKIDNEIDKIMIEIQRWEYRQTISKMKS 122          
BLAST of mRNA_P-canaliculata_contig101935.283.1 vs. uniprot
Match: A0A2G1YV19_9PROT (HPt domain-containing protein n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G1YV19_9PROT)

HSP 1 Score: 123 bits (309), Expect = 4.610e-34
Identity = 65/121 (53.72%), Postives = 84/121 (69.42%), Query Frame = 1
Query:    1 MTDSSEIDFDHLNQYVSGDPDLTREVFGLFRNQVEMWGRGLTADADDDMWANVTHSLKGSARAVGAMGLAEACEKAEELVGDDRRPGAREVSVQTLEQRIEQVLNEIIRWEYKDDMRRLRS 363
            M+D+ EIDF+H+ QY+  D DLT+EVFGLF+NQVEMW RG+ ADA+DD W  + HSLKGSARAVGA  LAE C K E L  +      RE+ +  ++  IE+ L EI RWEY+  +  +RS
Sbjct:    1 MSDT-EIDFEHIKQYLGDDMDLTKEVFGLFKNQVEMWXRGMIADANDDSWVAIMHSLKGSARAVGAHRLAELCSKGEGLTCEKGGIEIREIHIHEVKFSIEKALIEIGRWEYRQTLASMRS 120          
BLAST of mRNA_P-canaliculata_contig101935.283.1 vs. uniprot
Match: A0A7V5U1B2_9PROT (HPt domain-containing protein n=1 Tax=Hellea balneolensis TaxID=287478 RepID=A0A7V5U1B2_9PROT)

HSP 1 Score: 120 bits (301), Expect = 8.040e-33
Identity = 62/115 (53.91%), Postives = 76/115 (66.09%), Query Frame = 1
Query:   19 IDFDHLNQYVSGDPDLTREVFGLFRNQVEMWGRGLTADADDDMWANVTHSLKGSARAVGAMGLAEACEKAEELVGDDRRPGAREVSVQTLEQRIEQVLNEIIRWEYKDDMRRLRS 363
            IDF+HLN Y+ G+  L  EVFGLF+NQVEMW + + ADADDD WA+V HSLKGSARAVGA  LA  C   EELVG    P  R   +  +   I++ L EI RWEY+  +  +RS
Sbjct:    6 IDFEHLNTYLGGEVSLIAEVFGLFKNQVEMWSKMMNADADDDSWASVMHSLKGSARAVGAARLAGLCAHGEELVGASNSPIRRAAHIDEIRFEIDRALIEIGRWEYRQTLASMRS 120          
BLAST of mRNA_P-canaliculata_contig101935.283.1 vs. uniprot
Match: A0A2G2MY62_9PROT (HPt domain-containing protein n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2MY62_9PROT)

HSP 1 Score: 119 bits (298), Expect = 2.430e-32
Identity = 63/120 (52.50%), Postives = 80/120 (66.67%), Query Frame = 1
Query:    4 TDSSEIDFDHLNQYVSGDPDLTREVFGLFRNQVEMWGRGLTADADDDMWANVTHSLKGSARAVGAMGLAEACEKAEELVGDDRRPGAREVSVQTLEQRIEQVLNEIIRWEYKDDMRRLRS 363
            T ++EIDF+H+ QYV  D  L +EVFGLF+NQVEMW RG+T  A+DD W  V HSLKGSARAVGA  LA  CE+ E+L G       R+  +  ++  IE+VL EI RWEY   +  +RS
Sbjct:    5 TPNTEIDFEHIKQYVGDDTALIKEVFGLFKNQVEMWSRGMTPQANDDDWGAVMHSLKGSARAVGAHNLAALCEQGEKLTGSLGGLETRKAHIHDVQFSIEKVLIEIGRWEYTQTLASMRS 124          
BLAST of mRNA_P-canaliculata_contig101935.283.1 vs. uniprot
Match: UPI0003A67511 (Hpt domain-containing protein n=1 Tax=Robiginitomaculum antarcticum TaxID=437507 RepID=UPI0003A67511)

HSP 1 Score: 118 bits (295), Expect = 6.940e-32
Identity = 61/115 (53.04%), Postives = 78/115 (67.83%), Query Frame = 1
Query:   19 IDFDHLNQYVSGDPDLTREVFGLFRNQVEMWGRGLTADADDDMWANVTHSLKGSARAVGAMGLAEACEKAEELVGDDRRPGAREVSVQTLEQRIEQVLNEIIRWEYKDDMRRLRS 363
            I+F HL QYV  D  LT EVFGLFR+Q +MW + L A ADD+ W ++ H+LKG+ARAVGA GLA+ CE AE L G +    AR V+VQ ++  IE V + I RWEY+  +  LRS
Sbjct:   10 INFKHLRQYVGDDTALTAEVFGLFRHQTDMWCKALDAKADDETWISIAHTLKGTARAVGACGLADVCENAELLTGKNATATARTVAVQDIQSWIEAVNHRISRWEYRQTLAALRS 124          
BLAST of mRNA_P-canaliculata_contig101935.283.1 vs. uniprot
Match: A0A7C5QRE9_9PROT (HPt domain-containing protein n=1 Tax=Hellea balneolensis TaxID=287478 RepID=A0A7C5QRE9_9PROT)

HSP 1 Score: 103 bits (258), Expect = 2.840e-26
Identity = 54/116 (46.55%), Postives = 76/116 (65.52%), Query Frame = 1
Query:   16 EIDFDHLNQYVSGDPDLTREVFGLFRNQVEMWGRGLTADADDDMWANVTHSLKGSARAVGAMGLAEACEKAEELVGDDRRPGAREVSVQTLEQRIEQVLNEIIRWEYKDDMRRLRS 363
            EIDF+HL +Y+  D  +  EVFGLF++QVEMW +     A D+ W +V HSLKGSARA+GA  LA  CEKAE +VG+      R   ++ ++ RI+++  EI RWEY+  +  +RS
Sbjct:    9 EIDFEHLGRYLGDDVAVLSEVFGLFKHQVEMWSKLFDVKAGDEQWRSVMHSLKGSARAIGAKRLASLCEKAETMVGEMAIESHRGRILEDIQFRIDRINIEIGRWEYRQTLASMRS 124          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101935.283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00198C3A714.640e-6279.34Uncharacterized protein n=2 Tax=Litorimonas cladop... [more]
UPI00041CDFAB3.480e-4462.61Hpt domain-containing protein n=1 Tax=Hellea balne... [more]
A0A8J3CNE6_9PROT7.200e-4363.48HPt domain-containing protein n=1 Tax=Algimonas ar... [more]
A0A420WK33_9PROT1.020e-4261.34Hpt domain-containing protein n=2 Tax=Litorimonas ... [more]
A0A848V4L3_9PROT6.670e-4253.33Hpt domain-containing protein n=1 Tax=Hellea sp. T... [more]
A0A2G1YV19_9PROT4.610e-3453.72HPt domain-containing protein n=1 Tax=Robiginitoma... [more]
A0A7V5U1B2_9PROT8.040e-3353.91HPt domain-containing protein n=1 Tax=Hellea balne... [more]
A0A2G2MY62_9PROT2.430e-3252.50HPt domain-containing protein n=1 Tax=Robiginitoma... [more]
UPI0003A675116.940e-3253.04Hpt domain-containing protein n=1 Tax=Robiginitoma... [more]
A0A7C5QRE9_9PROT2.840e-2646.55HPt domain-containing protein n=1 Tax=Hellea balne... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101935contigP-canaliculata_contig101935:45..413 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score151.4
Seed ortholog evalue2.8e-34
Seed eggNOG ortholog1121948.AUAC01000002_gene1328
KEGG koko:K07647
KEGG Pathwayko02020,map02020
KEGG ModuleM00455
EggNOG free text desc.Hpt domain
EggNOG OGs1RI91@1224,2UGE0@28211,43YPW@69657,COG2198@1,COG2198@2
EC2.7.13.3
COG Functional cat.T
Best tax levelHyphomonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko02022
Hectar predicted targeting categoryother localisation
Exons1
Model size369
Cds size369
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.5305922-CDS-P-canaliculata_contig101935:44..4131622815591.5305922-CDS-P-canaliculata_contig101935:44..413Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101935 45..413 -
1693494154.5667176-CDS-P-canaliculata_contig101935:44..4131693494154.5667176-CDS-P-canaliculata_contig101935:44..413Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101935 45..413 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101935.283.1prot_P-canaliculata_contig101935.283.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig101935 45..413 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig101935.283.1

>prot_P-canaliculata_contig101935.283.1 ID=prot_P-canaliculata_contig101935.283.1|Name=mRNA_P-canaliculata_contig101935.283.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=123bp
MTDSSEIDFDHLNQYVSGDPDLTREVFGLFRNQVEMWGRGLTADADDDMW
ANVTHSLKGSARAVGAMGLAEACEKAEELVGDDRRPGAREVSVQTLEQRI
EQVLNEIIRWEYKDDMRRLRSS*
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mRNA from alignment at P-canaliculata_contig101935:45..413-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101935.283.1 ID=mRNA_P-canaliculata_contig101935.283.1|Name=mRNA_P-canaliculata_contig101935.283.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=369bp|location=Sequence derived from alignment at P-canaliculata_contig101935:45..413- (Pelvetia canaliculata dioecious)
ATGACTGATTCATCCGAAATCGATTTTGACCACCTCAATCAATATGTCAG CGGCGATCCGGATCTGACGCGGGAGGTCTTTGGGCTGTTCCGCAATCAGG TCGAGATGTGGGGGCGCGGCCTGACGGCGGATGCCGATGACGACATGTGG GCGAATGTGACCCATTCTTTGAAAGGGTCTGCGAGAGCGGTGGGCGCTAT GGGTCTGGCTGAGGCATGCGAAAAGGCGGAGGAGCTGGTTGGAGACGATA GACGTCCGGGCGCGCGCGAAGTGTCGGTTCAAACCTTGGAACAACGGATT GAACAGGTCCTGAACGAGATCATCCGATGGGAATATAAGGACGACATGCG GCGTCTGAGATCGTCCTAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig101935:45..413-

>mRNA_P-canaliculata_contig101935.283.1 ID=mRNA_P-canaliculata_contig101935.283.1|Name=mRNA_P-canaliculata_contig101935.283.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=738bp|location=Sequence derived from alignment at P-canaliculata_contig101935:45..413- (Pelvetia canaliculata dioecious)
ATGACTGATTCATCCGAAATCGATTTTGACCACCTCAATCAATATGTCAG
CGGCGATCCGGATCTGACGCGGGAGGTCTTTGGGCTGTTCCGCAATCAGG
TCGAGATGTGGGGGCGCGGCCTGACGGCGGATGCCGATGACGACATGTGG
GCGAATGTGACCCATTCTTTGAAAGGGTCTGCGAGAGCGGTGGGCGCTAT
GGGTCTGGCTGAGGCATGCGAAAAGGCGGAGGAGCTGGTTGGAGACGATA
GACGTCCGGGCGCGCGCGAAGTGTCGGTTCAAACCTTGGAACAACGGATT
GAACAGGTCCTGAACGAGATCATCCGATGGGAATATAAGGACGACATGCG
GCGTCTGAGATCGTCCTAAATGACTGATTCATCCGAAATCGATTTTGACC
ACCTCAATCAATATGTCAGCGGCGATCCGGATCTGACGCGGGAGGTCTTT
GGGCTGTTCCGCAATCAGGTCGAGATGTGGGGGCGCGGCCTGACGGCGGA
TGCCGATGACGACATGTGGGCGAATGTGACCCATTCTTTGAAAGGGTCTG
CGAGAGCGGTGGGCGCTATGGGTCTGGCTGAGGCATGCGAAAAGGCGGAG
GAGCTGGTTGGAGACGATAGACGTCCGGGCGCGCGCGAAGTGTCGGTTCA
AACCTTGGAACAACGGATTGAACAGGTCCTGAACGAGATCATCCGATGGG
AATATAAGGACGACATGCGGCGTCTGAGATCGTCCTAA
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