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Homology
BLAST of mRNA_P-canaliculata_contig10190.280.1 vs. uniprot
Match: A0A1V8TK25_9PEZI (RNA-directed DNA polymerase n=1 Tax=Rachicladosporium antarcticum TaxID=1507870 RepID=A0A1V8TK25_9PEZI) HSP 1 Score: 116 bits (291), Expect = 3.390e-23 Identity = 82/259 (31.66%), Postives = 136/259 (52.51%), Query Frame = 3 Query: 447 PAGAFNVHQVPSFAGSAKEDAKRWLDKLTFEERTHGVS-PGQMVWSFNVLLVEKVAEWADTNHLLQTILFKPIHEVTAENWTTVKNGFLLRWKKPARERMNPVQEVNSLRQGMEESLESYYSRANNLL----GWMNIPDSVQAGATLLQFVTQAFVKGLQDEDIQIRLMRVMPQEE---RTLMETFEAVSRVFQLRDMEDALEREHDQDRELEILRRFYDAYTGRSGEDPSEVSAEALSIRSRTSGACVSMEGPSRHPQ 1199
PA Q+ F G+ +DAKRW +L + GV+ P + FN L +K AEWA+ +HL++ +L + EV + TVK+ F+ W K R N + E+ +L+Q +E+L YY+RA NLL G N + QA ++L T A+ +G+ DE++++R+MR+ ++ RTL T+E + +L E A+ E +++ELE+L+ + PS E +++ + A + GPS+H Q
Sbjct: 66 PAPQVTASQMEVFIGAPHQDAKRWWARLVANLQRDGVTEPRAKLDQFNSFLGDKPAEWAEDDHLVKRLLDEENDEVREADVKTVKDAFIADWGKKPRAAPNAIPEIQTLKQKSDETLRQYYNRAMNLLRSAGGDDNTATASQASKSILSLATTAYKRGIFDEELRLRVMRMAEPDDGNVRTLQNTYEKAESMERLIRDEHAMIGESRKEKELEVLKAY--VMDRSMNRQPSAAIMEQVALITGVPFARQEVAGPSQHHQ 322
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Fungi |
| Seed ortholog score | 83.2 |
| Seed ortholog evalue | 3.6e-13 |
| Seed eggNOG ortholog | 1047171.Mycgr3P97873 |
| EggNOG OGs | 20740@147541,2943U@1,2RB0R@2759,38MGB@33154,3MNY1@451867,3PPCI@4751,3R8NC@4890 |
| Best tax level | Dothideomycetidae |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 1870 |
| Cds size | 1419 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815591.321298-UTR-P-canaliculata_contig10190:9935..10366 | 1622815591.321298-UTR-P-canaliculata_contig10190:9935..10366 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig10190 9936..10366 + |
| 1693494154.4684427-UTR-P-canaliculata_contig10190:9935..10366 | 1693494154.4684427-UTR-P-canaliculata_contig10190:9935..10366 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig10190 9936..10366 + |
| 1622815591.348475-UTR-P-canaliculata_contig10190:11785..11805 | 1622815591.348475-UTR-P-canaliculata_contig10190:11785..11805 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig10190 11786..11805 + |
| 1693494154.4877353-UTR-P-canaliculata_contig10190:11785..11805 | 1693494154.4877353-UTR-P-canaliculata_contig10190:11785..11805 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig10190 11786..11805 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815591.333841-CDS-P-canaliculata_contig10190:10366..11785 | 1622815591.333841-CDS-P-canaliculata_contig10190:10366..11785 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10190 10367..11785 + |
| 1693494154.4796522-CDS-P-canaliculata_contig10190:10366..11785 | 1693494154.4796522-CDS-P-canaliculata_contig10190:10366..11785 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10190 10367..11785 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10190.280.1 >prot_P-canaliculata_contig10190.280.1 ID=prot_P-canaliculata_contig10190.280.1|Name=mRNA_P-canaliculata_contig10190.280.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=473bp
MAQPPPAGAFNVHQVPSFAGSAKEDAKRWLDKLTFEERTHGVSPGQMVWS
FNVLLVEKVAEWADTNHLLQTILFKPIHEVTAENWTTVKNGFLLRWKKPA
RERMNPVQEVNSLRQGMEESLESYYSRANNLLGWMNIPDSVQAGATLLQF
VTQAFVKGLQDEDIQIRLMRVMPQEERTLMETFEAVSRVFQLRDMEDALE
REHDQDRELEILRRFYDAYTGRSGEDPSEVSAEALSIRSRTSGACVSMEG
PSRHPQQQHAWYQAPPPQQMPPAWYYYRGPLSSQPGPSSSSQQAPPPMPL
SPTEIAPAPASPVEETPAEDNEEPEPMEVQAAEPPARDPPPPVGPEEPTT
ENEADALPAPKVAPTTESVGECWSPPGVLQVAGSVQTESDGATKIAVIRV
SPPPPPEPPPWLVTGRLFVRFFPLSLCVNREVDVWGEGVARGLGKEVRLI
GRHTRKGGYGQPMGIWRVPPRR* back to topmRNA from alignment at P-canaliculata_contig10190:9936..11805+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-canaliculata_contig10190.280.1 ID=mRNA_P-canaliculata_contig10190.280.1|Name=mRNA_P-canaliculata_contig10190.280.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1870bp|location=Sequence derived from alignment at P-canaliculata_contig10190:9936..11805+ (Pelvetia canaliculata dioecious)
TTCCCTCTTTCGCTGGTGACCGTGCCAGGGGGTCCCTTCGATCCAGCACC
GTCTGGCGAGGGTGACCTAGGAGAAAAACCCCGTTCTTGTTTGAATTGTT
CTTGCACAGGCACCTGGAATTGTTCGCCGCATCGCACGGCATTGTTCGCC
GTACCGCACGGCACCTGGCTCTCGTTCGCCGCATCGCACGGCACTGTTCG
CCGTATCGCACGGCACCTGTTCCCGTTCGCCGCTTCGCACGGCACCTGTC
CTCGTTCGCCGCATCACCGGCACCTGTTCCCGTTCGCCGCACCGCACGGC
ACCTGTTCCCGTTCGCCGCTTCGCACGGCACCTGTCCTCATTCGCCGCAT
CACCGGCACCTGTTCCCGTTTGCCGCACCGCACGGCACCTGTTCTCGTTC
ATCGCATCTCTCGACAGTCCCTACAGTCACCATGGCCCAGCCGCCACCGG
CAGGGGCATTCAATGTGCACCAAGTCCCTTCATTCGCAGGAAGTGCAAAG
GAAGACGCCAAGCGATGGCTGGACAAGCTGACCTTTGAAGAGAGGACACA
TGGGGTTTCTCCTGGGCAAATGGTATGGTCCTTCAACGTACTACTGGTCG
AGAAGGTGGCGGAGTGGGCGGACACAAACCACCTACTGCAAACGATTCTC
TTCAAGCCCATACATGAGGTCACCGCTGAGAACTGGACAACAGTGAAGAA
TGGGTTCTTGTTGCGGTGGAAGAAGCCAGCGAGGGAGAGAATGAACCCGG
TCCAGGAGGTCAACAGCCTCCGACAAGGAATGGAAGAGAGCCTTGAGTCC
TACTACTCTCGCGCCAACAACCTCCTGGGGTGGATGAACATACCGGACTC
AGTTCAGGCCGGAGCAACGTTGCTGCAATTCGTCACTCAAGCATTTGTCA
AGGGCCTGCAGGACGAAGACATCCAGATCCGGTTGATGAGGGTGATGCCA
CAAGAGGAGAGGACGTTGATGGAAACGTTCGAAGCTGTCAGCAGGGTGTT
TCAGCTCCGGGATATGGAAGATGCGTTGGAAAGGGAGCACGACCAGGATA
GAGAGTTGGAGATTCTGCGACGTTTCTATGACGCATACACGGGCCGCAGC
GGGGAAGATCCATCAGAGGTGTCGGCAGAGGCGCTGTCCATCCGGAGCCG
CACGAGTGGTGCATGTGTGAGCATGGAGGGTCCGAGCCGTCATCCCCAGC
AGCAGCACGCGTGGTATCAAGCTCCACCGCCACAGCAAATGCCCCCGGCC
TGGTATTACTATCGAGGTCCGTTGTCGTCGCAACCGGGACCGTCGTCATC
GTCGCAACAGGCTCCCCCGCCAATGCCGCTATCACCAACTGAGATTGCTC
CAGCACCAGCATCGCCAGTGGAGGAGACTCCAGCGGAGGACAACGAAGAG
CCAGAGCCAATGGAGGTCCAAGCAGCAGAACCGCCGGCGCGAGATCCGCC
ACCACCAGTCGGGCCAGAGGAGCCGACAACGGAGAACGAGGCGGATGCAC
TGCCTGCACCAAAGGTTGCCCCCACGACCGAGAGTGTCGGAGAGTGCTGG
TCGCCACCGGGAGTGTTACAAGTCGCCGGGAGTGTCCAGACCGAGAGTGA
CGGAGCCACAAAAATTGCTGTCATCAGAGTGTCGCCGCCACCACCACCGG
AACCACCGCCGTGGCTAGTGACCGGAAGGCTCTTTGTTCGTTTCTTTCCT
TTGTCTCTCTGTGTCAACCGGGAGGTTGACGTCTGGGGTGAGGGAGTAGC
GAGAGGATTGGGAAAGGAAGTGCGCCTAATTGGTCGGCACACCCGAAAAG
GGGGATACGGGCAGCCGATGGGTATATGGAGGGTCCCCCCTCGCAGGTAG
CTCTGAAGACACATCCCTCC back to topCoding sequence (CDS) from alignment at P-canaliculata_contig10190:9936..11805+ >mRNA_P-canaliculata_contig10190.280.1 ID=mRNA_P-canaliculata_contig10190.280.1|Name=mRNA_P-canaliculata_contig10190.280.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2838bp|location=Sequence derived from alignment at P-canaliculata_contig10190:9936..11805+ (Pelvetia canaliculata dioecious)
ATGGCCCAGCCGCCACCGGCAGGGGCATTCAATGTGCACCAAGTCCCTTC
ATTCGCAGGAAGTGCAAAGGAAGACGCCAAGCGATGGCTGGACAAGCTGA
CCTTTGAAGAGAGGACACATGGGGTTTCTCCTGGGCAAATGGTATGGTCC
TTCAACGTACTACTGGTCGAGAAGGTGGCGGAGTGGGCGGACACAAACCA
CCTACTGCAAACGATTCTCTTCAAGCCCATACATGAGGTCACCGCTGAGA
ACTGGACAACAGTGAAGAATGGGTTCTTGTTGCGGTGGAAGAAGCCAGCG
AGGGAGAGAATGAACCCGGTCCAGGAGGTCAACAGCCTCCGACAAGGAAT
GGAAGAGAGCCTTGAGTCCTACTACTCTCGCGCCAACAACCTCCTGGGGT
GGATGAACATACCGGACTCAGTTCAGGCCGGAGCAACGTTGCTGCAATTC
GTCACTCAAGCATTTGTCAAGGGCCTGCAGGACGAAGACATCCAGATCCG
GTTGATGAGGGTGATGCCACAAGAGGAGAGGACGTTGATGGAAACGTTCG
AAGCTGTCAGCAGGGTGTTTCAGCTCCGGGATATGGAAGATGCGTTGGAA
AGGGAGCACGACCAGGATAGAGAGTTGGAGATTCTGCGACGTTTCTATGA
CGCATACACGGGCCGCAGCGGGGAAGATCCATCAGAGGTGTCGGCAGAGG
CGCTGTCCATCCGGAGCCGCACGAGTGGTGCATGTGTGAGCATGGAGGGT
CCGAGCCGTCATCCCCAGCAGCAGCACGCGTGGTATCAAGCTCCACCGCC
ACAGCAAATGCCCCCGGCCTGGTATTACTATCGAGGTCCGTTGTCGTCGC
AACCGGGACCGTCGTCATCGTCGCAACAGGCTCCCCCGCCAATGCCGCTA
TCACCAACTGAGATTGCTCCAGCACCAGCATCGCCAGTGGAGGAGACTCC
AGCGGAGGACAACGAAGAGCCAGAGCCAATGGAGGTCCAAGCAGCAGAAC
CGCCGGCGCGAGATCCGCCACCACCAGTCGGGCCAGAGGAGCCGACAACG
GAGAACGAGGCGGATGCACTGCCTGCACCAAAGGTTGCCCCCACGACCGA
GAGTGTCGGAGAGTGCTGGTCGCCACCGGGAGTGTTACAAGTCGCCGGGA
GTGTCCAGACCGAGAGTGACGGAGCCACAAAAATTGCTGTCATCAGAGTG
TCGCCGCCACCACCACCGGAACCACCGCCGTGGCTAGTGACCGGAAGGCT
CTTTGTTCGTTTCTTTCCTTTGTCTCTCTGTGTCAACCGGGAGGTTGACG
TCTGGGGTGAGGGAGTAGCGAGAGGATTGGGAAAGGAAGTGCGCCTAATT
GGTCGGCACACCCGAAAAGGGGGATACGGGCAGCCGATGGGTATATGGAG
GGTCCCCCCTCGCAGGTAGATGGCCCAGCCGCCACCGGCAGGGGCATTCA
ATGTGCACCAAGTCCCTTCATTCGCAGGAAGTGCAAAGGAAGACGCCAAG
CGATGGCTGGACAAGCTGACCTTTGAAGAGAGGACACATGGGGTTTCTCC
TGGGCAAATGGTATGGTCCTTCAACGTACTACTGGTCGAGAAGGTGGCGG
AGTGGGCGGACACAAACCACCTACTGCAAACGATTCTCTTCAAGCCCATA
CATGAGGTCACCGCTGAGAACTGGACAACAGTGAAGAATGGGTTCTTGTT
GCGGTGGAAGAAGCCAGCGAGGGAGAGAATGAACCCGGTCCAGGAGGTCA
ACAGCCTCCGACAAGGAATGGAAGAGAGCCTTGAGTCCTACTACTCTCGC
GCCAACAACCTCCTGGGGTGGATGAACATACCGGACTCAGTTCAGGCCGG
AGCAACGTTGCTGCAATTCGTCACTCAAGCATTTGTCAAGGGCCTGCAGG
ACGAAGACATCCAGATCCGGTTGATGAGGGTGATGCCACAAGAGGAGAGG
ACGTTGATGGAAACGTTCGAAGCTGTCAGCAGGGTGTTTCAGCTCCGGGA
TATGGAAGATGCGTTGGAAAGGGAGCACGACCAGGATAGAGAGTTGGAGA
TTCTGCGACGTTTCTATGACGCATACACGGGCCGCAGCGGGGAAGATCCA
TCAGAGGTGTCGGCAGAGGCGCTGTCCATCCGGAGCCGCACGAGTGGTGC
ATGTGTGAGCATGGAGGGTCCGAGCCGTCATCCCCAGCAGCAGCACGCGT
GGTATCAAGCTCCACCGCCACAGCAAATGCCCCCGGCCTGGTATTACTAT
CGAGGTCCGTTGTCGTCGCAACCGGGACCGTCGTCATCGTCGCAACAGGC
TCCCCCGCCAATGCCGCTATCACCAACTGAGATTGCTCCAGCACCAGCAT
CGCCAGTGGAGGAGACTCCAGCGGAGGACAACGAAGAGCCAGAGCCAATG
GAGGTCCAAGCAGCAGAACCGCCGGCGCGAGATCCGCCACCACCAGTCGG
GCCAGAGGAGCCGACAACGGAGAACGAGGCGGATGCACTGCCTGCACCAA
AGGTTGCCCCCACGACCGAGAGTGTCGGAGAGTGCTGGTCGCCACCGGGA
GTGTTACAAGTCGCCGGGAGTGTCCAGACCGAGAGTGACGGAGCCACAAA
AATTGCTGTCATCAGAGTGTCGCCGCCACCACCACCGGAACCACCGCCGT
GGCTAGTGACCGGAAGGCTCTTTGTTCGTTTCTTTCCTTTGTCTCTCTGT
GTCAACCGGGAGGTTGACGTCTGGGGTGAGGGAGTAGCGAGAGGATTGGG
AAAGGAAGTGCGCCTAATTGGTCGGCACACCCGAAAAGGGGGATACGGGC
AGCCGATGGGTATATGGAGGGTCCCCCCTCGCAGGTAG back to top
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