mRNA_P-canaliculata_contig101870.272.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig101870.272.1
Unique NamemRNA_P-canaliculata_contig101870.272.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101870.272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101870contigP-canaliculata_contig101870:120..953 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size834
Cds size834
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.7527297-CDS-P-canaliculata_contig101870:119..9531622815590.7527297-CDS-P-canaliculata_contig101870:119..953Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101870 120..953 -
1693494154.2120953-CDS-P-canaliculata_contig101870:119..9531693494154.2120953-CDS-P-canaliculata_contig101870:119..953Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101870 120..953 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101870.272.1prot_P-canaliculata_contig101870.272.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig101870 120..953 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig101870.272.1

>prot_P-canaliculata_contig101870.272.1 ID=prot_P-canaliculata_contig101870.272.1|Name=mRNA_P-canaliculata_contig101870.272.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=278bp
MTSTVTDGALHFVHLADSHVASGDTRGVDLVRLEGVVERLRDLHARGVPI
DFVVHGGDLVDDADEPDARPDTTAAALGVLDALPVRWFLLNGNHDRRAFL
TAESVDAAGTRPSGLGEVPTTDATGVAARLAGAAQLLFVDANPERGERAQ
LEGVIPLDAIASVARRIDAHSGRSLVFLHYPPLRQEAAWSGAPSGGEALH
AVLAARSDRLHGVFVAHNHRSLHHVRDGVLYATAPALSRSLLLWPDQATL
AFDDEPVLGLHYVTLGADGSTRVQHHAF
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mRNA from alignment at P-canaliculata_contig101870:120..953-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101870.272.1 ID=mRNA_P-canaliculata_contig101870.272.1|Name=mRNA_P-canaliculata_contig101870.272.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=834bp|location=Sequence derived from alignment at P-canaliculata_contig101870:120..953- (Pelvetia canaliculata dioecious)
ATGACGTCGACCGTGACCGATGGCGCCCTGCATTTCGTCCACCTCGCCGA
CAGCCACGTCGCGTCCGGCGACACCCGGGGCGTCGATCTCGTGCGGCTCG
AGGGCGTCGTCGAGCGGCTGCGCGATCTGCACGCGCGCGGCGTCCCGATC
GACTTCGTCGTCCACGGGGGCGATCTCGTCGACGACGCCGACGAGCCGGA
TGCCCGCCCCGACACGACCGCCGCCGCGCTCGGCGTGCTCGACGCCCTGC
CGGTCCGCTGGTTCCTGCTGAACGGCAACCACGATCGGCGCGCCTTCCTG
ACGGCGGAGTCGGTCGACGCCGCCGGCACCCGTCCGAGCGGTCTCGGCGA
GGTGCCGACGACGGACGCGACCGGTGTCGCCGCTCGTCTCGCGGGCGCCG
CGCAGCTCCTGTTCGTCGACGCCAACCCGGAGCGGGGCGAGCGGGCGCAG
CTCGAGGGAGTCATCCCGCTCGATGCGATCGCGTCCGTCGCTCGCCGCAT
CGACGCCCACTCCGGCCGATCGCTCGTCTTCCTGCACTACCCGCCGCTGC
GTCAGGAAGCGGCCTGGTCCGGCGCGCCGAGTGGTGGCGAGGCGCTGCAC
GCCGTGCTCGCGGCGCGGTCGGATCGGCTTCACGGTGTCTTCGTCGCGCA
CAACCACCGGAGCCTCCACCACGTCCGCGACGGCGTCCTCTACGCGACGG
CACCGGCGCTGAGCCGCTCGCTTCTGCTCTGGCCCGATCAGGCGACGCTC
GCCTTCGACGACGAACCGGTGCTCGGCCTGCACTACGTGACGCTCGGGGC
GGACGGCTCGACCCGCGTGCAGCACCATGCCTTC
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Coding sequence (CDS) from alignment at P-canaliculata_contig101870:120..953-

>mRNA_P-canaliculata_contig101870.272.1 ID=mRNA_P-canaliculata_contig101870.272.1|Name=mRNA_P-canaliculata_contig101870.272.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1668bp|location=Sequence derived from alignment at P-canaliculata_contig101870:120..953- (Pelvetia canaliculata dioecious)
ATGACGTCGACCGTGACCGATGGCGCCCTGCATTTCGTCCACCTCGCCGA
CAGCCACGTCGCGTCCGGCGACACCCGGGGCGTCGATCTCGTGCGGCTCG
AGGGCGTCGTCGAGCGGCTGCGCGATCTGCACGCGCGCGGCGTCCCGATC
GACTTCGTCGTCCACGGGGGCGATCTCGTCGACGACGCCGACGAGCCGGA
TGCCCGCCCCGACACGACCGCCGCCGCGCTCGGCGTGCTCGACGCCCTGC
CGGTCCGCTGGTTCCTGCTGAACGGCAACCACGATCGGCGCGCCTTCCTG
ACGGCGGAGTCGGTCGACGCCGCCGGCACCCGTCCGAGCGGTCTCGGCGA
GGTGCCGACGACGGACGCGACCGGTGTCGCCGCTCGTCTCGCGGGCGCCG
CGCAGCTCCTGTTCGTCGACGCCAACCCGGAGCGGGGCGAGCGGGCGCAG
CTCGAGGGAGTCATCCCGCTCGATGCGATCGCGTCCGTCGCTCGCCGCAT
CGACGCCCACTCCGGCCGATCGCTCGTCTTCCTGCACTACCCGCCGCTGC
GTCAGGAAGCGGCCTGGTCCGGCGCGCCGAGTGGTGGCGAGGCGCTGCAC
GCCGTGCTCGCGGCGCGGTCGGATCGGCTTCACGGTGTCTTCGTCGCGCA
CAACCACCGGAGCCTCCACCACGTCCGCGACGGCGTCCTCTACGCGACGG
CACCGGCGCTGAGCCGCTCGCTTCTGCTCTGGCCCGATCAGGCGACGCTC
GCCTTCGACGACGAACCGGTGCTCGGCCTGCACTACGTGACGCTCGGGGC
GGACGGCTCGACCCGCGTGCAGCACCATGCCTTCATGACGTCGACCGTGA
CCGATGGCGCCCTGCATTTCGTCCACCTCGCCGACAGCCACGTCGCGTCC
GGCGACACCCGGGGCGTCGATCTCGTGCGGCTCGAGGGCGTCGTCGAGCG
GCTGCGCGATCTGCACGCGCGCGGCGTCCCGATCGACTTCGTCGTCCACG
GGGGCGATCTCGTCGACGACGCCGACGAGCCGGATGCCCGCCCCGACACG
ACCGCCGCCGCGCTCGGCGTGCTCGACGCCCTGCCGGTCCGCTGGTTCCT
GCTGAACGGCAACCACGATCGGCGCGCCTTCCTGACGGCGGAGTCGGTCG
ACGCCGCCGGCACCCGTCCGAGCGGTCTCGGCGAGGTGCCGACGACGGAC
GCGACCGGTGTCGCCGCTCGTCTCGCGGGCGCCGCGCAGCTCCTGTTCGT
CGACGCCAACCCGGAGCGGGGCGAGCGGGCGCAGCTCGAGGGAGTCATCC
CGCTCGATGCGATCGCGTCCGTCGCTCGCCGCATCGACGCCCACTCCGGC
CGATCGCTCGTCTTCCTGCACTACCCGCCGCTGCGTCAGGAAGCGGCCTG
GTCCGGCGCGCCGAGTGGTGGCGAGGCGCTGCACGCCGTGCTCGCGGCGC
GGTCGGATCGGCTTCACGGTGTCTTCGTCGCGCACAACCACCGGAGCCTC
CACCACGTCCGCGACGGCGTCCTCTACGCGACGGCACCGGCGCTGAGCCG
CTCGCTTCTGCTCTGGCCCGATCAGGCGACGCTCGCCTTCGACGACGAAC
CGGTGCTCGGCCTGCACTACGTGACGCTCGGGGCGGACGGCTCGACCCGC
GTGCAGCACCATGCCTTC
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