mRNA_P-canaliculata_contig101693.262.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig101693.262.1
Unique NamemRNA_P-canaliculata_contig101693.262.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig101693.262.1 vs. uniprot
Match: A0A540X8Q5_9DELT (Uncharacterized protein n=7 Tax=Myxococcus TaxID=32 RepID=A0A540X8Q5_9DELT)

HSP 1 Score: 88.6 bits (218), Expect = 1.510e-19
Identity = 51/135 (37.78%), Postives = 70/135 (51.85%), Query Frame = 1 
Query:    1 NFGQHWRSGNIVPVTYSVTLPSTLFAELVDTGLPELVYDMKKFPESCDEYEQLLRVHNWPETTEKIMLDNTLAIKTLAWFGHEMMLRWLGDREPSKTPGFVFNTIESTTFNGHNPVIVGLGRMAGQAVDF--QDV 399
            NF Q WR+  I  V Y V LP      L++   P LV D ++FP   D  +Q LR   WPE   + ++D   A + LA+F HE++LRW  D  P+  PGFV N++E T   G +  + G  R     V +  QDV
Sbjct:   38 NFNQPWRTPGITEVRYEVILPGQYAVALLERDWPGLVSDYQRFPAPDDPLDQALRALEWPEPA-RALVDPVAAPRILAFFAHELLLRWFDDGLPAG-PGFVLNSVEETGMAGTDVYLAGHARPHDPRVSYVYQDV 170
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101693.262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A540X8Q5_9DELT1.510e-1937.78Uncharacterized protein n=7 Tax=Myxococcus TaxID=3... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101693contigP-canaliculata_contig101693:604..1005 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score90.5
Seed ortholog evalue6.4e-16
Seed eggNOG ortholog1144275.COCOR_00521
EggNOG OGs1QA91@1224,2AN7Q@1,2X928@28221,2Z1IP@29,31D5R@2,434WY@68525
Best tax levelMyxococcales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size402
Cds size402
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.096151-CDS-P-canaliculata_contig101693:603..10051622815590.096151-CDS-P-canaliculata_contig101693:603..1005Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101693 604..1005 -
1693494153.8712947-CDS-P-canaliculata_contig101693:603..10051693494153.8712947-CDS-P-canaliculata_contig101693:603..1005Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101693 604..1005 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101693.262.1prot_P-canaliculata_contig101693.262.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig101693 604..1005 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig101693.262.1

>prot_P-canaliculata_contig101693.262.1 ID=prot_P-canaliculata_contig101693.262.1|Name=mRNA_P-canaliculata_contig101693.262.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=134bp
NFGQHWRSGNIVPVTYSVTLPSTLFAELVDTGLPELVYDMKKFPESCDEY
EQLLRVHNWPETTEKIMLDNTLAIKTLAWFGHEMMLRWLGDREPSKTPGF
VFNTIESTTFNGHNPVIVGLGRMAGQAVDFQDV*
back to top

mRNA from alignment at P-canaliculata_contig101693:604..1005-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101693.262.1 ID=mRNA_P-canaliculata_contig101693.262.1|Name=mRNA_P-canaliculata_contig101693.262.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=402bp|location=Sequence derived from alignment at P-canaliculata_contig101693:604..1005- (Pelvetia canaliculata dioecious)
AACTTCGGGCAACATTGGCGATCTGGAAATATAGTTCCAGTCACATATTC
GGTCACTTTACCTTCGACCTTGTTCGCGGAACTTGTTGATACGGGTTTGC
CAGAATTGGTTTATGACATGAAAAAATTTCCCGAGTCATGCGACGAGTAT
GAACAATTGCTTCGGGTGCATAACTGGCCGGAAACAACTGAAAAGATCAT
GCTGGACAACACGCTCGCCATAAAAACACTTGCATGGTTTGGGCACGAAA
TGATGCTTCGATGGTTAGGCGACCGAGAACCTTCTAAGACTCCGGGATTT
GTCTTTAACACGATTGAATCAACAACATTTAACGGTCATAATCCAGTGAT
TGTTGGACTGGGGCGAATGGCGGGCCAAGCCGTAGATTTCCAAGACGTCT
AA
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig101693:604..1005-

>mRNA_P-canaliculata_contig101693.262.1 ID=mRNA_P-canaliculata_contig101693.262.1|Name=mRNA_P-canaliculata_contig101693.262.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at P-canaliculata_contig101693:604..1005- (Pelvetia canaliculata dioecious)
AACTTCGGGCAACATTGGCGATCTGGAAATATAGTTCCAGTCACATATTC
GGTCACTTTACCTTCGACCTTGTTCGCGGAACTTGTTGATACGGGTTTGC
CAGAATTGGTTTATGACATGAAAAAATTTCCCGAGTCATGCGACGAGTAT
GAACAATTGCTTCGGGTGCATAACTGGCCGGAAACAACTGAAAAGATCAT
GCTGGACAACACGCTCGCCATAAAAACACTTGCATGGTTTGGGCACGAAA
TGATGCTTCGATGGTTAGGCGACCGAGAACCTTCTAAGACTCCGGGATTT
GTCTTTAACACGATTGAATCAACAACATTTAACGGTCATAATCCAGTGAT
TGTTGGACTGGGGCGAATGGCGGGCCAAGCCGTAGATTTCCAAGACGTCT
AAAACTTCGGGCAACATTGGCGATCTGGAAATATAGTTCCAGTCACATAT
TCGGTCACTTTACCTTCGACCTTGTTCGCGGAACTTGTTGATACGGGTTT
GCCAGAATTGGTTTATGACATGAAAAAATTTCCCGAGTCATGCGACGAGT
ATGAACAATTGCTTCGGGTGCATAACTGGCCGGAAACAACTGAAAAGATC
ATGCTGGACAACACGCTCGCCATAAAAACACTTGCATGGTTTGGGCACGA
AATGATGCTTCGATGGTTAGGCGACCGAGAACCTTCTAAGACTCCGGGAT
TTGTCTTTAACACGATTGAATCAACAACATTTAACGGTCATAATCCAGTG
ATTGTTGGACTGGGGCGAATGGCGGGCCAAGCCGTAGATTTCCAAGACGT
CTAA
back to top