mRNA_P-canaliculata_contig10166.258.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig10166.258.1 vs. uniprot
Match: D8LCC5_ECTSI (Deubiquitinating enzyme A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCC5_ECTSI) HSP 1 Score: 345 bits (885), Expect = 5.190e-103 Identity = 224/424 (52.83%), Postives = 263/424 (62.03%), Query Frame = 2 Query: 446 KSEAHFFEPYVEGDMAAFVRYVAIKRQNAVWGDDPEVQALCEIYDRPAEIWAYDPQLGAKTLRTFHEAAGRAGGQIEARRPPMRLSYYGGGHYDSVSPIDDRAPLGEESQASAS----------------------------TPEPGVLEESALERSRRRKAEAGSGRWDPEEMKLRQEDE-SPSEQNIMDYALAWSRNVFETQFDDIESALVASVDHMEESHLSSLKAASRDSELVVLQEEMLLTAQAQSEEEQLRKALEASRCTAAAAAAEAEMVSQAIAESMAL-----------TSGGLTEKAGMVEGKP-SPGADGQDNQVLGAAAAGTAAAGEDEDED---------------------------FKRALLLSGMVE--EWEA-PPEGVGTGQDFDLDELQEDP-ELKFAIDASLAGD 1501 +SEAHFFEPYVEGDMAAF+RY+ +KRQNAVWGDDPEVQALCEIYDRPAEIWAYDPQLGAKTLRTFHEAAG AGG+ + RPPMRLSYYGGGHYDSV+P+D + PL ++ A PEPG LEE+ALERS+ R AE GSGRWD EEMK+R++DE SP+ + MD+ALAWSRNVFE QFDD++SALVASVDHME+S+LSSL+AASRDSELVVLQEEML TAQAQSEEEQLR ALEASR + +V QA+AESM + G+ G G SP A K+ALL+SGM WE P E G + F +D+L+ED +L+ AI+ASLAG+ Sbjct: 378 ESEAHFFEPYVEGDMAAFLRYLEVKRQNAVWGDDPEVQALCEIYDRPAEIWAYDPQLGAKTLRTFHEAAGSAGGRHGSPRPPMRLSYYGGGHYDSVAPLDSQPPLVGDAAGPAGXXXXXXXXXXXXXXXXXXXXXXXDAVSPAPEPGQLEEAALERSKIRAAEVGSGRWDLEEMKMRKDDENSPAGRAAMDHALAWSRNVFEAQFDDLDSALVASVDHMEQSNLSSLEAASRDSELVVLQEEMLRTAQAQSEEEQLRNALEASRNSXXXXXXXXXLVRQAMAESMGAGXXXXXXXXXXXASGVCVDGGNARGDVGSPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKKALLMSGMAAGGAWETLPAEAGGPAKGFGVDDLEEDDAQLRLAIEASLAGE 801
BLAST of mRNA_P-canaliculata_contig10166.258.1 vs. uniprot
Match: W2LIN5_PHYPR (Deubiquitinating enzyme A n=12 Tax=Phytophthora TaxID=4783 RepID=W2LIN5_PHYPR) HSP 1 Score: 160 bits (405), Expect = 6.060e-38 Identity = 102/242 (42.15%), Postives = 146/242 (60.33%), Query Frame = 2 Query: 446 KSEAHFFEPYVEGDMAAFVRYVAIKRQNAVWGDDPEVQALCEIYDRPAEIWAYDPQLGAKTLRTFHEAAGRAGGQIEARRPPMRLSYYGGGHYDSVSPIDDRAPLGEESQASASTPEPGVLEESALERSRRRKAEAGSGRWDPEEMKLR-QEDESPSEQNIMDYALAWSRNVFETQFDDIESALVAS-VDHMEESHLSS------LKAASRDSELVVLQEEMLLTAQAQSEEEQLRKALEAS 1147 +SE +FEPYV GDMAAF+RY+ KR++ VWGDDPE+QALCE+YDRPAE++AYDPQ G + LR FHE + A RPP+RLSYYGGGHYDS+ +G + QA+ PG E+ + S R + E +++ Q D +E ++ L SRN F+ +E L S V++ E S + ++ A+R+SE+ +Q E+L A+A+SEEEQ++ A++AS Sbjct: 259 ESEKEYFEPYVVGDMAAFMRYLRYKRRDGVWGDDPELQALCELYDRPAEVFAYDPQQGFRKLRCFHENSALA-----RTRPPIRLSYYGGGHYDSL--------VGPDHQANLIRERPGQWEQRHIGYSHRINSRETRNDVSGVEQEVQAQSDRERTEVEQLEQVLVQSRNEFDAMDKSLEETLKLSLVEYGEASPAQAHREREEIEEATRESEMAAIQAELLAKAKAESEEEQMKSAIQAS 487
BLAST of mRNA_P-canaliculata_contig10166.258.1 vs. uniprot
Match: K3WER0_GLOUD (Deubiquitinating enzyme A n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WER0_GLOUD) HSP 1 Score: 160 bits (405), Expect = 1.160e-37 Identity = 129/365 (35.34%), Postives = 186/365 (50.96%), Query Frame = 2 Query: 446 KSEAHFFEPYVEGDMAAFVRYVAIKRQNAVWGDDPEVQALCEIYDRPAEIWAYDPQLGAKTLRTFHEAAGRAGGQIEARRPPMRLSYYGGGHYDSVSPIDDRAPLGEESQASASTPEPGVLEESALERSRR-RKAEAGSGRWDPEEMKLRQEDESPSEQNIMDYALAWSRNVFETQFDDIESALVASVDHMEESHLSS---------LKAASRDSELVVLQEEMLLTAQAQSEEEQLRKALEASRCTAAAAAAEAEMVSQAIAESMALTSGGLTEKAGMVEGKPSPGADGQDNQVLGAAAAGTAAAGEDEDEDFKRALLLSGM-----VEEWEAPPEGVGTGQDFDLD-ELQEDPELKFAIDASL 1492 +SE +FEPYV GDM AF+RY+ KR+ VWGDDPE+QA+CE+YDRPAE++AYDP G + LRTFHE++G + RPP+ LSYYGGGHYDS+ +G + PG E LE SRR E + + D +E ++ L SRN F+ +++ L S++ E S+ ++ ++ A R+SE+ +Q +++ A+ SEEE ++KA+EAS T A A + + Q ++ ++ + G L N+ GA A TAA+ D DE + AL LS +W P G G+ E ED EL+ AI ASL Sbjct: 294 ESEKEYFEPYVVGDMEAFLRYLNYKRRQGVWGDDPELQAMCELYDRPAEVYAYDPVHGFRKLRTFHESSG-----LSRNRPPICLSYYGGGHYDSL--------VGMNHSENCIRDPPGEWERRHLEYSRRINTREQDDSTSEVARQVQAESDRETTEMAQLEQTLLLSRNEFDGMNSNLDETLKLSLEEYENSNAATASVGTSDAQIQEAKRESEMTAIQADLIAKAKQASEEELMKKAIEASLETLPAGANDMDFDDQ-VSAAIKASLGHLGH-----------------NKSAGAGGATTAAS--DYDEQLRLALELSAQEYTTTASDWMFSP---GGGEHTTASGENDEDAELQRAIQASL 622
BLAST of mRNA_P-canaliculata_contig10166.258.1 vs. uniprot
Match: G4Z036_PHYSP (Deubiquitinating enzyme A n=6 Tax=Phytophthora TaxID=4783 RepID=G4Z036_PHYSP) HSP 1 Score: 159 bits (402), Expect = 1.250e-37 Identity = 128/358 (35.75%), Postives = 181/358 (50.56%), Query Frame = 2 Query: 446 KSEAHFFEPYVEGDMAAFVRYVAIKRQNAVWGDDPEVQALCEIYDRPAEIWAYDPQLGAKTLRTFHEAAGRAGGQIEARRPPMRLSYYGGGHYDSVSPIDDRAPLGEESQASASTPEPGVLEESALERSRR-RKAEAGSGRWDPEEMKLRQEDESPSEQNIMDYALAWSRNVFETQFDDIESALVASV-DHMEES-------HLSSLKAASRDSELVVLQEEMLLTAQAQSEEEQLRKALEASRCTAAAAAAEAEMVSQAIAESMALTSGGLTEKAGMVEGKPSPGADGQDNQVLGAAAAGTAAAGEDEDEDFKRALLLSGMVEEWEAPPEGVGTGQDFDLDELQEDPELKFAIDASL 1492 +SE +FEPYV GDMAAF+RY+ KR++ VWGDDPE+QALCE+YDRPAE++AYDP G + LR FHE + + RPP+RLSYYGGGHYDS+ D A L E+ PG E+ +E S R E E+ Q D +E ++ L SRN F+ +E L S+ +H E+ + ++ A+R+SE+ +Q E+L A+A+SEEE ++ A++AS A ++ + +Q A A LG A G + +D DE +RA+ LS A P G+ + DE+ E L+ AI ASL Sbjct: 242 ESEKEYFEPYVVGDMAAFMRYLRYKRRDGVWGDDPELQALCELYDRPAEVFAYDPVQGFRKLRCFHENSA-----LSRSRPPIRLSYYGGGHYDSLVGADHAANLIRET--------PGQWEQRHIEYSHRINSRETHDDVAGVEQQVQAQSDRERTEVEQLEQILMQSRNEFDAMDASLEETLKLSLAEHGGEASPALANRERNDIEEATRESEMAAIQAELLAKAKAESEEEHMKTAIQAS-LGGHALVSDGDFDAQMSAAIQA---------------------------SLGDAGPGASIHADDYDEQLRRAMELSAQEYAPPAQPFGLYGDESASTDEMDE---LQRAIQASL 555
BLAST of mRNA_P-canaliculata_contig10166.258.1 vs. uniprot
Match: A0A8J5J3G2_9STRA (OTU domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J3G2_9STRA) HSP 1 Score: 160 bits (406), Expect = 3.090e-37 Identity = 101/243 (41.56%), Postives = 146/243 (60.08%), Query Frame = 2 Query: 446 KSEAHFFEPYVEGDMAAFVRYVAIKRQNAVWGDDPEVQALCEIYDRPAEIWAYDPQLGAKTLRTFHEAAGRAGGQIEARRPPMRLSYYGGGHYDSVSPIDDRAPLGEESQASASTPEPGVLEESALERSRR-RKAEAGSGRWDPEEMKLRQEDESPSEQNIMDYALAWSRNVFETQFDDIESALVASV-DHMEES-------HLSSLKAASRDSELVVLQEEMLLTAQAQSEEEQLRKALEAS 1147 +SE +FEPYV GDMAAF+RY++ KR++ VWGDDPE+QALCE+YDRPAE++AYDPQ G + LR FHE + + RPP+RLSYYGGGHYDS+ +G + Q++ +PG E+ + S R E S E+ Q D +E ++ L SRN F+ +E L S+ +H E+ ++ A+R+SE+ +Q E+L A+A+SEEEQ++ A++AS Sbjct: 473 ESEKEYFEPYVVGDMAAFMRYLSYKRRDGVWGDDPELQALCELYDRPAEVFAYDPQQGFRKLRCFHENSA-----LSRTRPPIRLSYYGGGHYDSL--------VGTDHQSNLIREDPGQWEQRHIGYSHRINSRETRSDVSGVEQEVQTQSDRERTEVEQLEQVLMQSRNEFDAMDRSLEDTLKLSLAEHGGEASPAQAHREREEMEEATRESEMAAIQAELLAKAKAESEEEQMKSAIQAS 702
BLAST of mRNA_P-canaliculata_contig10166.258.1 vs. uniprot
Match: A0A0P1AKP3_PLAHL (Deubiquitinating enzyme A n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AKP3_PLAHL) HSP 1 Score: 157 bits (396), Expect = 5.660e-36 Identity = 101/244 (41.39%), Postives = 148/244 (60.66%), Query Frame = 2 Query: 446 KSEAHFFEPYVEGDMAAFVRYVAIKRQNAVWGDDPEVQALCEIYDRPAEIWAYDPQLGAKTLRTFHEAAGRAGGQIEARRPPMRLSYYGGGHYDSVSPIDDRAPLGEESQASASTPEPGVLEESALERSRRRKAEAGSGRW---DPEEMKLRQEDESPSEQNIMDYALAWSRNVFETQFDDIESALVASV-DHMEESHLS------SLKAASRDSELVVLQEEMLLTAQAQSEEEQLRKALEAS 1147 +SE +FEPYV GDMAAF+RY+ KR++ VWGDDPE+QALCE+YDRPAE++AYDPQ G + LR FHE +G A RPP+RLSYYGGGHYDS+ +G + Q + PG E+ + S R + S + ++++++ E E +E ++ L SRN F+ +E L S+ +H E+S ++ A+R+SE+ +Q E+L A+ +SEEEQ+ A++AS Sbjct: 475 ESEKEYFEPYVVGDMAAFMRYLRYKRRDGVWGDDPELQALCELYDRPAEVFAYDPQNGFRKLRCFHENSGLA-----RSRPPIRLSYYGGGHYDSL--------VGPDHQVNLVNEIPGQWEQRHIGYSYRINSRENSNDTPGGEGQKVQIQSEHER-TEVEQLEQVLVQSRNEFDAMDKSLEETLNLSLAEHEEKSKAQVXXXXXEVEEATRESEIAAIQAELLAKAKEESEEEQMNSAIQAS 704
BLAST of mRNA_P-canaliculata_contig10166.258.1 vs. uniprot
Match: A0A833TF83_PHYIN (Deubiquitinating enzyme A n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833TF83_PHYIN) HSP 1 Score: 157 bits (396), Expect = 6.100e-36 Identity = 100/242 (41.32%), Postives = 145/242 (59.92%), Query Frame = 2 Query: 446 KSEAHFFEPYVEGDMAAFVRYVAIKRQNAVWGDDPEVQALCEIYDRPAEIWAYDPQLGAKTLRTFHEAAGRAGGQIEARRPPMRLSYYGGGHYDSVSPIDDRAPLGEESQASASTPEPGVLEESALERSRRRKAEAGSGRWDPEEMKLR-QEDESPSEQNIMDYALAWSRNVFETQFDDIESALVASV-DHMEESHLSS------LKAASRDSELVVLQEEMLLTAQAQSEEEQLRKALEAS 1147 +SE +FEPYV GDMAAF+RY+ KR++ VWGDDPE+QALCE+YDRPAE++AYDPQ G + LR FHE + A RPP+RLSYYGGGHYDS+ +G + QA+ PG E+ + S R + E +++ Q D +E ++ L SRN F+ +E L S+ +H E + + + A+R+SE+ +Q E++ A+A+SEEEQ++ A++AS Sbjct: 498 ESEKEYFEPYVVGDMAAFMRYLHYKRRDGVWGDDPELQALCELYDRPAEVFAYDPQQGFRKLRCFHENSALA-----RSRPPIRLSYYGGGHYDSL--------MGSDHQANLIRETPGQWEQRHIGYSHRINSRETRDDVSGVEQEVQAQSDRERTEVEQLEQVLMQSRNEFDAMDRSLEETLKLSLAEHGEAAPAQAHREREEIAEATRESEMAAIQAELVAKAKAESEEEQMKSAIKAS 726
BLAST of mRNA_P-canaliculata_contig10166.258.1 vs. uniprot
Match: H3GFG4_PHYRM (Deubiquitinating enzyme A n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GFG4_PHYRM) HSP 1 Score: 150 bits (379), Expect = 1.000e-34 Identity = 97/243 (39.92%), Postives = 141/243 (58.02%), Query Frame = 2 Query: 446 KSEAHFFEPYVEGDMAAFVRYVAIKRQNAVWGDDPEVQALCEIYDRPAEIWAYDPQLGAKTLRTFHEAAGRAGGQIEARRPPMRLSYYGGGHYDSVSPIDDRAPLGEESQASASTPEPGVLEESALERSRRRKAEAGSGRWDPEEMKLRQE-DESPSEQNIMDYALAWSRNVFETQFDDIESALVASV-DHMEES-------HLSSLKAASRDSELVVLQEEMLLTAQAQSEEEQLRKALEAS 1147 +SE +FEPYV GDMAAF+RY+ KR++ VWGDDPE+QALCE+YDRPAE++AYDP G + LR FHE + + RPP+RLSYYGGGHYDS+ D L E+ PG E+ + S R + E +++ E D +E ++ L SRN F+ +E L S+ +H E + ++ A+R+SE+ +Q E+L A+A+SE+EQ++ ++AS Sbjct: 259 ESEKEYFEPYVVGDMAAFMRYLRYKRRDGVWGDDPELQALCELYDRPAEVFAYDPAEGFRKLRCFHENSA-----LSRSRPPIRLSYYGGGHYDSLVGPDHETNLIRET--------PGQWEQRHIGYSHRINSRETRNEVASIEQQVQTESDRERTEVEQLENILMLSRNEFDAMDTSLEETLKKSLAEHGGEGPPAQAHRERADIEEATRESEMAAIQTELLAKAKAESEDEQMKSVIQAS 488
BLAST of mRNA_P-canaliculata_contig10166.258.1 vs. uniprot
Match: A0A6G0W5F2_9STRA (Deubiquitinating enzyme A n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W5F2_9STRA) HSP 1 Score: 148 bits (373), Expect = 1.710e-34 Identity = 100/237 (42.19%), Postives = 136/237 (57.38%), Query Frame = 2 Query: 452 EAHFFEPYVEGDMAAFVRYVAIKRQNAVWGDDPEVQALCEIYDRPAEIWAYDPQLGAKTLRTFHEAAGRAGGQIEARRPPMRLSYYGGGHYDSVSPIDDRAPLGEESQASASTPEPGVLEESALERSRRRKAEAGSGRWDPEEMKLRQEDESPSEQNIMDYALAWSRNVFETQFDDIESALVASVDHME-----ESHLSSLKAASRDSELVVLQEEMLLTAQAQSEEEQLRKALEAS 1147 E +FEP+V GDMAAF+RYV KR +AVWGDDPE+QA+CE+YDR AE++AYD Q+GAK LRTFHE + RP + LS+YGGGHYDS+ +G + + + T PGV E RR A A S RW EE K AL SR F ++++AL AS++ E + + ++A +SEL LQ EML + QSE+E +++A++AS Sbjct: 217 EKEYFEPFVVGDMAAFLRYVNHKRHDAVWGDDPELQAICELYDRSAEVFAYDAQVGAKRLRTFHE---------NSERPSICLSFYGGGHYDSL--------VGRQHRLNLITETPGVYEA-------RRLAVASSKRWSAEEAK----------------ALEISRREFGGMAMNLDAALNASIESYEAEVVRQIESTDVRAVQEESELDHLQTEMLKSVAQQSEDELVQQAVQAS 413
BLAST of mRNA_P-canaliculata_contig10166.258.1 vs. uniprot
Match: A0A5D6YD11_9STRA (Deubiquitinating enzyme A n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YD11_9STRA) HSP 1 Score: 150 bits (379), Expect = 9.010e-34 Identity = 98/256 (38.28%), Postives = 141/256 (55.08%), Query Frame = 2 Query: 446 KSEAHFFEPYVEGDMAAFVRYVAIKRQNAVWGDDPEVQALCEIYDRPAEIWAYDPQLGAKTLRTFHEAAGRAGGQIEARRPPMRLSYYGGGHYDSVSPIDDRAPLGEESQASASTPEPGVLEESALERSRRRKAEAGSGRWDPE-EMKLRQE-DESPSEQNIMDYALAWSRNVFETQFDDIESALVASVDHMEES--------------------HLSSLKAASRDSELVVLQEEMLLTAQAQSEEEQLRKALEAS 1147 +SE +FEPYV GDMAAFVRY+ KR+ VWGDDPE+QA+CE+YDRPAE++AYDP G + LRTFHE++G + RPP+RLSYYGGGHYDS+ +D A ++ PG E +E SRR D + +++ E D +E ++ L SR F+ ++ L S++ E S L+ A+R+SE+ +Q +++ + SEEE ++KA+EAS Sbjct: 516 ESEKEYFEPYVVGDMAAFVRYLNYKRRAGVWGDDPELQAMCELYDRPAEVYAYDPAHGFRKLRTFHESSG-----VSRSRPPIRLSYYGGGHYDSLVGLDHAANCIRDA--------PGEWERRHIEYSRRINTRDRDDAADADVALEVAAESDRETTEMAQLEQMLLLSRTEFDGMDSSLDDTLKLSLEEYERSGGAEAAASGGAGAGDVAVEREQQELRDATRESEMAAIQADLIAKVKQASEEEMVKKAIEAS 758 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10166.258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10166.258.1 >prot_P-canaliculata_contig10166.258.1 ID=prot_P-canaliculata_contig10166.258.1|Name=mRNA_P-canaliculata_contig10166.258.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=339bp MAAFVRYVAIKRQNAVWGDDPEVQALCEIYDRPAEIWAYDPQLGAKTLRTback to top mRNA from alignment at P-canaliculata_contig10166:2791..6982- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10166.258.1 ID=mRNA_P-canaliculata_contig10166.258.1|Name=mRNA_P-canaliculata_contig10166.258.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=4192bp|location=Sequence derived from alignment at P-canaliculata_contig10166:2791..6982- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10166:2791..6982- >mRNA_P-canaliculata_contig10166.258.1 ID=mRNA_P-canaliculata_contig10166.258.1|Name=mRNA_P-canaliculata_contig10166.258.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2034bp|location=Sequence derived from alignment at P-canaliculata_contig10166:2791..6982- (Pelvetia canaliculata dioecious)back to top |