Homology
BLAST of mRNA_P-canaliculata_contig101577.246.1 vs. uniprot
Match:
A0A5C6DFK5_9BACT (PEP-CTERM domain-containing protein n=1 Tax=Novipirellula aureliae TaxID=2527966 RepID=A0A5C6DFK5_9BACT)
HSP 1 Score: 62.8 bits (151), Expect = 2.480e-9
Identity = 50/122 (40.98%), Postives = 67/122 (54.92%), Query Frame = 1
Query: 10 ESSNINFNEFLTFSFDTDVVFDEIDFFGISGTETVVG-TVDGSS--FDFTNNQDGGSDLVLDPFESLVIGAGTDVSFAFADGTGNANAFGINDFTVT--AVPEPSSLALLGFCGLAIAGRRR 360
ES + N E FD +V+ E +F I G + TV+G+ F FT+ G D DP LV+ AGTDV+FA A GT I++ +VT A+PEPSSLA+LG G+ + RRR
Sbjct: 120 ESGDFNPGEAWVIEFDKNVMITEFNFSSIDGVDEFFDVTVEGNPTVFSFTDGTSG--DDFADPLSGLVVAAGTDVTFA-ARGTIGGTNIRISEISVTVVAIPEPSSLAVLGLGGMMMFVRRR 238
BLAST of mRNA_P-canaliculata_contig101577.246.1 vs. uniprot
Match:
A0A1M6SA19_9BACT (PEP-CTERM protein-sorting domain-containing protein n=1 Tax=Rubritalea squalenifaciens DSM 18772 TaxID=1123071 RepID=A0A1M6SA19_9BACT)
HSP 1 Score: 51.6 bits (122), Expect = 3.280e-5
Identity = 28/63 (44.44%), Postives = 38/63 (60.32%), Query Frame = 1
Query: 181 LDPFESLVIGAGTDVSFAF--ADGTGNANAFGINDFTVTAVPEPSSLALLGFCGLAIAGRRRR 363
LD ++SL++ AG ++ A +DG + + D VTAVPEPSS AL+G GL RRRR
Sbjct: 196 LDGYDSLILNAGDTLTLATDTSDGLATQGGWALTDIEVTAVPEPSSTALIGLAGLGFILRRRR 258
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101577.246.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 2.48e-9 / Id = 40.98 Expect = 3.28e-5 / Id = 44.44 Sequence A0A5C6DFK5_9BACT A0A1M6SA19_9BACT back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 1 Model size 369 Cds size 369 Stop 1 Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815588.9701922-CDS-P-canaliculata_contig101577:209..578 1622815588.9701922-CDS-P-canaliculata_contig101577:209..578 Pelvetia canaliculata dioecious CDS P-canaliculata_contig101577 210..578 - 1693494153.2685432-CDS-P-canaliculata_contig101577:209..578 1693494153.2685432-CDS-P-canaliculata_contig101577:209..578 Pelvetia canaliculata dioecious CDS P-canaliculata_contig101577 210..578 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig101577.246.1
>prot_P-canaliculata_contig101577.246.1 ID=prot_P-canaliculata_contig101577.246.1|Name=mRNA_P-canaliculata_contig101577.246.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=123bp
VDFESSNINFNEFLTFSFDTDVVFDEIDFFGISGTETVVGTVDGSSFDFT back to top mRNA from alignment at P-canaliculata_contig101577:210..578-
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101577.246.1 ID=mRNA_P-canaliculata_contig101577.246.1|Name=mRNA_P-canaliculata_contig101577.246.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=369bp|location=Sequence derived from alignment at P-canaliculata_contig101577:210..578- (Pelvetia canaliculata dioecious)GTTGACTTTGAAAGCTCAAATATTAATTTTAATGAGTTTTTAACTTTCTC
GTTCGATACAGATGTTGTTTTCGACGAAATCGACTTTTTTGGCATCAGTG
GTACTGAAACTGTGGTGGGTACAGTTGACGGATCGAGCTTTGACTTCACA
AACAATCAAGATGGTGGCAGCGACCTAGTCTTGGATCCGTTCGAGTCCCT
AGTGATCGGTGCTGGAACCGACGTCAGCTTTGCCTTCGCAGATGGAACAG
GTAATGCTAACGCTTTCGGCATTAACGACTTTACCGTAACCGCTGTTCCT
GAGCCATCGTCGCTCGCTCTGTTAGGCTTCTGCGGTCTTGCAATCGCTGG
TCGCCGTCGCCGCGTTTAG back to top Coding sequence (CDS) from alignment at P-canaliculata_contig101577:210..578-
>mRNA_P-canaliculata_contig101577.246.1 ID=mRNA_P-canaliculata_contig101577.246.1|Name=mRNA_P-canaliculata_contig101577.246.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=738bp|location=Sequence derived from alignment at P-canaliculata_contig101577:210..578- (Pelvetia canaliculata dioecious) back to top