Homology
BLAST of mRNA_P-canaliculata_contig10155.243.1 vs. uniprot
Match:
A0A6H5JNQ0_9PHAE (KIX_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNQ0_9PHAE)
HSP 1 Score: 114 bits (284), Expect = 8.050e-25
Identity = 63/79 (79.75%), Postives = 67/79 (84.81%), Query Frame = 2
Query: 389 MATNGSELFLDRATRVRKIHQIAQFLASIENKDPQDRNLHTLAQKFENQIFSAAMNVEDYNNRIHKKLTKVQKVRQQQA 625
MA NGSELFLDR TRVRKI QIA FLA IE KDPQDR+LH LAQKFENQIF+AAMNVEDYN RI+KKL+KV R QQA
Sbjct: 1 MAANGSELFLDRNTRVRKIQQIATFLAQIEGKDPQDRSLHGLAQKFENQIFTAAMNVEDYNTRINKKLSKV---RHQQA 76
BLAST of mRNA_P-canaliculata_contig10155.243.1 vs. uniprot
Match:
A0A836CHY1_9STRA (KIX_2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHY1_9STRA)
HSP 1 Score: 63.9 bits (154), Expect = 7.560e-8
Identity = 37/71 (52.11%), Postives = 52/71 (73.24%), Query Frame = 2
Query: 401 GSEL-FLDRATRVRKIHQIAQFLASIENKDPQDRNLHTLAQKFENQIFSAAMNVEDYNNRIHKKLTKVQKV 610
GS+L +DR R QIA+FLA++E KD D +LH LA +FENQIFS A++ +DY RI+KKL++V+K+
Sbjct: 7 GSDLQHVDRHACTR---QIAEFLANLEGKDKNDASLHELAGRFENQIFSVAVDFKDYQERINKKLSRVRKL 74
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10155.243.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 8.05e-25 / Id = 79.75 Expect = 7.56e-8 / Id = 52.11 Sequence A0A6H5JNQ0_9PHAE A0A836CHY1_9STRA back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 4 Model size 808 Cds size 420 Stop 0 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815588.6851327-CDS-P-canaliculata_contig10155:2206..2407 1622815588.6851327-CDS-P-canaliculata_contig10155:2206..2407 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10155 2207..2407 - 1693494153.1347222-CDS-P-canaliculata_contig10155:2206..2407 1693494153.1347222-CDS-P-canaliculata_contig10155:2206..2407 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10155 2207..2407 - 1622815588.69942-CDS-P-canaliculata_contig10155:5888..6002 1622815588.69942-CDS-P-canaliculata_contig10155:5888..6002 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10155 5889..6002 - 1693494153.1430914-CDS-P-canaliculata_contig10155:5888..6002 1693494153.1430914-CDS-P-canaliculata_contig10155:5888..6002 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10155 5889..6002 - 1622815588.7144194-CDS-P-canaliculata_contig10155:7195..7300 1622815588.7144194-CDS-P-canaliculata_contig10155:7195..7300 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10155 7196..7300 - 1693494153.1514325-CDS-P-canaliculata_contig10155:7195..7300 1693494153.1514325-CDS-P-canaliculata_contig10155:7195..7300 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10155 7196..7300 -
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815588.7255394-UTR-P-canaliculata_contig10155:7300..7434 1622815588.7255394-UTR-P-canaliculata_contig10155:7300..7434 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10155 7301..7434 - 1693494153.1597755-UTR-P-canaliculata_contig10155:7300..7434 1693494153.1597755-UTR-P-canaliculata_contig10155:7300..7434 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10155 7301..7434 - 1622815588.736614-UTR-P-canaliculata_contig10155:8547..8801 1622815588.736614-UTR-P-canaliculata_contig10155:8547..8801 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10155 8548..8801 - 1693494153.1698277-UTR-P-canaliculata_contig10155:8547..8801 1693494153.1698277-UTR-P-canaliculata_contig10155:8547..8801 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10155 8548..8801 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10155.243.1
>prot_P-canaliculata_contig10155.243.1 ID=prot_P-canaliculata_contig10155.243.1|Name=mRNA_P-canaliculata_contig10155.243.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=140bp
MATNGSELFLDRATRVRKIHQIAQFLASIENKDPQDRNLHTLAQKFENQI back to top mRNA from alignment at P-canaliculata_contig10155:2207..8801-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10155.243.1 ID=mRNA_P-canaliculata_contig10155.243.1|Name=mRNA_P-canaliculata_contig10155.243.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=6595bp|location=Sequence derived from alignment at P-canaliculata_contig10155:2207..8801- (Pelvetia canaliculata dioecious)AAAGGCTCGAAAGTGTGATCCGAGGAGAAACTCCTCATCGAGAGATAGCT
TTCGGGCGTGAAGGTGTAGAGAGCTGAGGGGCAAAAAATCTTGCTTCGGA
CCCGCAGCTGATCTAAGAAAGCCGTTTTGACTGAGGGCGAAAAGGAGGAC
ATTTCCAAATCGGCTGAGCTGGGGACTAGCGTTTGCGCTATTGTCGCTGG
AGAGGTCGTAGGCGGAGCGTCAGGGCAATCTCACTCGAGAGTTCGCTGTC
AAGG GTAAGCACGTTGATAGGCGGCTGGGGAGGGCGTGTCTCGCCAACTA
CGAAGTAGCGAAGAACAGGATAGGATCGAAAAGACAGCGAGCGCCGCGAC
AGGTAGTTTTGTGTGTGGAGAGCACATAACCTTTTCGACCTTACTTTTGT
CCGAGACAGACGCCGCACCATACCTCGCCCCGACTCGGCTGTGATAAAAA
CGCTCACGTTACACATGCGAAGAGTATAGATAGGGCCTAAGATCCGCGAC
ACCCTTGCGGCGATGTCAATTTCCTCGTGATGTCCCCAATTTGAAGGTCC
GCGATATTTAGGTCGTTTCGGTTGTACTATACAGTTCGTACTCGGCGTCC
CCTCGACAACGGCGGGTGTAAGGCGCTCCGGCGGTAGCTGTGGGGTAGAC
GTAATCCTTTGACTTGAAGGCGTGAGTACTTGCTCCATGTGGAGTTTTCT
ACTTGAACTTGCACACGCTAGTGAAGGGTAGGCGTGACCCGAGAGTGGAG
AGGAAAGTATTGGGCACTTTCATTCCTTTTACATTCCCCAGCGGCCCACT
CGTCTCCCTGTAGTTTTTCTCTCCTAGCTGTAACCCAACGAACGCGCTTC
AAGCTTAGCGCAGATTTCCAATTTTTTGTTGGGGAGCCGGCACGACTCAA
CATATCGAAGTGGGCTCATACCGTTGCTGGATAGATGGGTGCTCGAGGTA
GACCTTGGTCGGAACGGCCATAGGGTACCTTCTCTTCAATTTTTAATAGA
CGAACGTTTCCATGGTGGCTCTCCCTTTTTACACTCCGTTTCCCAAGCGT
ATGAATTGCTAAGTTCTCTCAACCCAGTTCACCGCTGAATCATTTCTCAC
CAATACTGGTATATTCTCTAAGCGCATTGTCTATAGGAGCATTTTCATGG
TGGCGTTTGCTTCACTGCTGAGGTTGTTGTTCTTCCTCCACTCTTTTTCA
AAACTCATTTCATGACTATCATACCCGTCCCCCACACAAAACTTTTGAGG
CTGCTCTAAACCTTCGAGGCTTTGCTCAAGTAAAGAACCACAACCGCTCA
GCTCTGTGAGGTCTGATTCCATCCCAATTTTGTACGGTATAATACTCATT
TTTACTTCCTCTGGCAGATAAGGGGATCTTTGAAGCGGGTTCGTGGTCGC
AGTCCGCTTTTTGTGGTGGTGTCCTTCCCTGCTCCCTTCTGGGGAGGGCC
TCTCAAATCTGGCGAGAGGTGCGAGGAGCACCCTTGCCTTCGTCCCACAC
C ATGGCGACGAACGGGAGTGAACTATTCCTGGACCGGGCCACGCGCGTCC
GCAAGATTCATCAAATTGCCCAGTTTCTAGCGTCAATCGAGAACAAGGAT
CCCCAG GTAAACTCACTCGCGGCTTATTTCAAAGTTACTAACAAAAACGA
TGTAAAACAAATAATACCAGGTATGAATTTAAGTAAAGGCACAAAGCAAA
GGAGACACACGTGCCTGCCCGAGCTCCCACCCAGACCCGACATACTCTAT
TGAAGTATTGCCTCGATTTTTGCGCTCGAGCGTTCGTGCTTCTCCACCAT
GAAACTTCAGGGAAAGTATTCGCCTCGATTCGTTTAGAGATCTAACGTTT
CCCTTTCCGCCGGAGCCAATTCTGCGCCGAGGTTGTGACCTGCTTCGATC
GTCGATCTAGTCTTGGCTTTAACCTCAGCGGGAATATTTTTAGATTTCTC
TTTTTCGAAGTAATTTGTACGACGTTCGATGTTGTTGTATTCTTCACATA
CCGTACTATTGTCGACATCATCTGAGCATTTTTTTCTGGATGTACTGGCA
CGTGGCACACTCCCTACCCTCATCCCTTAATATCCGTAATATTCTATCAA
AAGGATCGCAAGTTACTGCACTACGATTCCTTTTTCTCTTGATCTTTTCC
CTTTTTTACGTACCACCTTCACGGTTGTATCTCTGTACTATAGTGTATAC
CTGTTGACGTTTGGTGGTGCCGGAGGCTTAAGGCAGAAAGAGACTCTGAT
GTCCCTGGCAAGTAAAAATTGGGGCAAGTCTACCGTACTGCTCTAGTTTA
CTGATGAGATGCACTCACCCTCCTTTATCCATGCGTCGGCAGCGGCGATT
GTGTCTGACTTAACCCACGCGCCTGGGAAGTCGTTTGATTTATTTTCATG
GATGTGGCCTCTGCTTCAAGTATTTCCCTTCAAGTTTGCCATGGTCTTTA
TGAAGCTTCCCCTCGCGTGGACCGCTTTTGGTACTGCAGGTCAAACTATA
GTACTTCTCTGTGGCAGTACAAAAAAGCAGTAGTCGTTTTTTTTTCAGTA
GAAGAACCGATGGAATCCCGGCACCGTCTTTGGTTATATTTTCTGTTTTT
GATATGTAGTAATATTATGTAGTGGGGGGTATCAGTCTAAGCCTTTCACT
TTCCCACGCAAAACAGGCTTACTCTGGCTTTCATTCAAACCTTAGATATT
TTTTTACCCGTACGGAGAGTACTTTGTTATAAGTTTCTCCCGTTCCTCTC
GGCGCATGCCCGTTTCCGTCTACTGGACATGTCTCGTTCATCATGGCAGG
ATCGAAACCTGCACACCCTTGCTCAAAAGTTCGAGAACCAAATTTTCTCG
GCGGCTATGAATGTTGAGGACTATAACAATAGGATACACAAGAAGCTCAC
CAAGGTTCAGAAG GTGCGTCGATCCCTTATTGTTTTTTTTTTCTACTACT
GTGTGTAGCCAGTCTTGTGACCTGCCCTGCTACCGCTGCTGTACATAAAC
ACCAAGTAAACAAAAGGAAACGTCGATTAAGGAAAGTGTACAGTTTGTGT
GTTTTTTTTCCGACATTTGACTGTTGACCCTATGCTACTACCATTGAGGA
ACCCGTCTAAATGCCATGAAGAGGTTTTGTCTTTGCAGCCCATGTTCCCA
CCCAAACGTTTCGACATTTTCCCCCTTGCCTGGAGGTATGCTCAGAAGGT
TTGGACGCGTTCATACTTTCTTACAAACAATACATAAGTACAGCAGTGCA
GTTTAACTCCTACGAGTTTTTTTTTCTCCCTCTTTGATAACCAAGAGTCT
ACAGAGGACCTAAACCTACACAGCTGTTTGTGTACACATACTGCTGTACA
GCAACTTAGTTGTCGGGATTTTTTTATCTTTGTATTCAAGATGGCAAAAT
GTACGTTTCGCCGCCCGTGTGGAACTCGACTCCTGCATGGTGTCTGCTTC
AGACAGCATCCCCGACGACATCCTGCCGCCCGTAGTATACAGAGTGTCGA
CGCAGCTTCGGTCTAAACGTGGGTAAATGGCACCGTTCTCGTACTCGCAT
CCCCTCGTTTCAAAGGCGTCTAATCGTGGGTAAATTACACCGTTCTCGTA
CTTGCATATCCCCTCGTGTTTCAAAGGCGTCTAATCGTGGGTAAATTACA
CCGTTCTCGTACTTGCATATCCCCTCGTGTTTCAAAGGCGTCTAATCGTG
GATAAATGACACCGTTCTCGTACTCGCATCCCCTCGTGTTTCAAAGGCGT
CTATTCGTGGGTAAAATGCACCGTTTCCGTACTCGCATCCCCTCGTGTTT
CAAAGGCGTCTATTCGTGGGTAAATGACACCGTTCTCGTACTTGCATCCC
CTCGTGTTTCAAAGGCGTCTAATCGTGGGTAAATGACATCGTTCTCGTAC
TCGCATCCCCTCGTGTTTCAAGGCGTCTGATCGTGGGTAAATGACATCGT
TCTCGTACTCGCATTCCCTCGTGTTTCAAAGGCGTGTATTCTTGGGTAAA
TTACACCATTCTCGTACTCGCATCCCCTCGTGTTTCAAAGGTGTGTATTC
GTGGGTAAATTACACCGTTCTCGTACTCGCATACCCTCGTGTTTCAAAGG
CGTCATTTACTTACAAAAGCCCCGATTCTCAATTTATACCCCGCTTTAGT
TGGCACTGACTGCACTATATACAACACGAGTAGGAACTGTACTCCATTTT
TTTCATTTACTTTTTCCGATACCCTCCGCTACCAACTTCGTTCTAGAAAC
GGGATCTCTCCGTGTTCGTTTCCTCGGGGTCAGATATTACTGTCGGTACC
TTTTCCCAATCAACAAACGTCCTTGGACTTGACTTTTGGTTTCTCTTACT
CTGCCCCAAATGCAAACCTGTCCACAAAGCATTAGCCCAGCCAAATTAGT
TTTTTTAGGTTTTTGTGTAGTGTGTTTTCGCCCCATTTATTGGTTCCCTA
CGTGTTTCTGTAGCCCTATGCAAACATCAGTAAAACGGTGGGTGTTTCCC
TGATAATGGAGAGAGCCCGAGTAAATTTCTTGTGGAGTTTTTGTTCTCTA
ATATACAAAATAATATAGCAGGCAATGTTCCCACCTCTACACGTAAACTT
TTCGACACAGCTTCACACCGATCGATCAATCGATTGTGTTGATTCTACAG
TGCAGGTAAAAACAGCTACCAGGTAGCTGTAAGGAGATTCAGATCCTTCT
TGTATTACACCTACTAATGTTGTATTTTCCTCATCTATGGTATAAACCGA
ACTGGTTCAAAAACAAAATGTACGAGCAGCCCCTCTCTTCGATATGTAAT
GTATTGTATTGTAACCTTCCCATTTAGTTGCCCTCCCCTTCCGATAAAAT
GGCAGCAGCAGTACACCCGGAAGGCACACGTTGCTTTTTCGTTGTCCCCG
GGGGACGTAAGCTTATTTCGTTCGTTTTACATCTGTGCTACAAAGAAGTG
GTGCAGTAGTCATGAGGAAAAAATCGGAGGAAATGAATCACTCCCACTCA
AAAGTTGAGGGGTATCTTCACAGACTTGCTTGAGAGTTTCGAGAACTGTT
CTATTTAGACTAGACTAATCATACAGCAGTAGTGTTGGCGTCTATTCAAC
GTGCGAATGCGGCTCCTCCAGACGTGAAAGCACGAGTAAAAAGAAGCTCT
ACAGCTGTACCACGTTATTGAAAGTCTCATCGAGCGAAAAACACATCTTT
TTTTGTCCCGGTTCTACTAACAATACATCAGTACTCCTGCAATTTTCCAT
TTTTTCCCCTGGAAAGGCATCTCGGTCGACGGGGCGCATAGGTCCTACTA
ATGATACAGAGTACTGCTGCAATTTTACATTTTCCCCCCGGAAAGACATC
TCGGTCGACTGGGCGCATAAAAGCCGAAGCAACGGGTTCGCGCGCGAGCC
GTCGCGTACGCTGTCGCCACGCCGTGCCCGCGATGTTGTTGAAAGTGTTG
ACGGAAATTGGGAATTTCGATTTCAGCGATGTGCGATTTTTATTTGTGCA
GCACCTTGAGTCAATATTGAATACGAAGTACTGTATTCAGAGTTCGGTGT
AAAAGAGCACCTAACTCTGTATGTCCGTTGATCTTACAAACGCTCCCGAT
TCACTGTTCGTTTCCTGTGTTTGTACACTCAAAGCGAAGAAAAACTATTT
ATAGTGTACTACTAATATATCAATCTAAAATGATAATATCGTCGTATGAT
ACAGGAATCTCAACAATTCTTAGACTGAAACAGCAGCGTACCTGTGTACA
ACTCTGCACCGAGTACTACTAAAATAATACGCCTTTGGCCTGCACACTGC
GACGGTTCGCTCGCCTCTACGTACGTAAGCTGTAAAATTACTTCTTTTCT
GAAGACGAACAGTAGTAGTGGCCAGGAATTCCCCGTTGGATTTTCCACCG
GAAAGTTCTGGTAAGATTACGTATCTTGTGCTCGCTGCTCGTACCCTTGC
GGTATTTCAGTAAAAGGTACTTGTTGTGAAGTACTTAGAGGTATAAATAC
TGTCTGTAGTATAAAGTACCGTCTGTAGCATAAAAACTGTCAGTAGTTTT
TTTGTACAGTACGAGCTCGAGTCTGACGTCACCCGAGGCCCCCGAATTTC
TCACCGCTAAAGCTGGTAAGATCACACTGCTTTTTGTATAGTTCTTCATC
TTTGAAGTTCTAGTAGCACGTCATTTCCGTTTTTGTTCCGTGGCATCTTG
TGCAATATTATCTTCCCTACAACTTGTACAGCACTTAATTTATTTACATC
GGGAACACCAGGAACGAGTAACCGATTCATTTGGCGCTCAACAGTTGGCC
ATTGTGCCCCAATCATGCTCTTACGGATTTGAGATACAGTACACATCCAC
ACAGACAAAAACAACAGCCCACGTGTGCTGCTTCTGTCGCGCAGGTGCGG
CAGCAACAGGCAGCGGCGGTACAAGCAAAGCAGGGCTCTCAGTCCCTCGA
ACAGGCTCGCCTGCATCAGCATCAGCAGCAGCAGCAGGCACTGCAGCAAC
GACGGCGGGCGCCGCACCAACGACAGCCACACCAGCAGGTTACTGGTGGC
AGTCTCTTACAGCAGCAGGGCTTGCCGATACAGACTTCGACGGCG back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10155:2207..8801-
>mRNA_P-canaliculata_contig10155.243.1 ID=mRNA_P-canaliculata_contig10155.243.1|Name=mRNA_P-canaliculata_contig10155.243.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=840bp|location=Sequence derived from alignment at P-canaliculata_contig10155:2207..8801- (Pelvetia canaliculata dioecious) back to top