Homology
BLAST of mRNA_P-canaliculata_contig10152.240.1 vs. uniprot
Match:
A0A6H5K0L1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0L1_9PHAE)
HSP 1 Score: 72.4 bits (176), Expect = 8.900e-10
Identity = 53/168 (31.55%), Postives = 85/168 (50.60%), Query Frame = 3
Query: 864 LLHKVCDFEGRP------------SLDGGSCRMATEPPRGGQSHLLLKGIKAVGQGDCGMPSISAFFSAGP-SHKTDRIISHVKVGHD---GVIQAAVFYPSMQVLWPDVYAAKNVQEVEVDVAVDLRWGDEEINCAGPSLKVTYRRPPVQATEATAASMIVCRRISP 1319
LL + CDF+GR S +G +T+ P L KGI+ V G + +++A FS GP + ++++ + G + YPSM+ +WP+VY+A++V+ VEVD+ VD+R D + + PS+KV YRR A AT + C ++ P
Sbjct: 432 LLRQECDFDGRSAAAVPAASATSASANGVCASSSTKKP----CRLRFKGIEGVDYGIRDL-AVTAQFSVGPPGNLVGTAPTNLEADRNACAGSSSCTITYPSMEDIWPEVYSARSVKVVEVDMTVDVRSSDGKWVHSWPSVKVMYRR----ARTATTPQVQRCVKVPP 590
BLAST of mRNA_P-canaliculata_contig10152.240.1 vs. uniprot
Match:
D7FZ47_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ47_ECTSI)
HSP 1 Score: 62.4 bits (150), Expect = 7.020e-8
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 1
Query: 1 VQFTGPQPSEGPGLLLRDLLSGSSVEARPVNLGRGRKKK 117
VQFTGPQPSEGPG LL DLL G SV+A+PV L RGRKK+
Sbjct: 101 VQFTGPQPSEGPGALLCDLLCGVSVDAKPVELPRGRKKR 139
BLAST of mRNA_P-canaliculata_contig10152.240.1 vs. uniprot
Match:
D8LCK7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK7_ECTSI)
HSP 1 Score: 64.7 bits (156), Expect = 2.390e-7
Identity = 31/77 (40.26%), Postives = 49/77 (63.64%), Query Frame = 3
Query: 1080 GHDGVIQAAVFYPSMQVLWPDVYAAKNVQEVEVDVAVDLRWGDEEINCAGPSLKVTYRRPPVQA---TEATAASMIV 1301
G G + AAV +PS+ +WP+VY N++ +EVD+ V++R D I GP+LK+TYRR + T+A AA+ ++
Sbjct: 565 GRRGRVDAAVEFPSIMEIWPEVYKVDNIRVMEVDMVVEVRSSDGNILYTGPTLKITYRRSAARTSAPTDAAAAAALM 641
BLAST of mRNA_P-canaliculata_contig10152.240.1 vs. uniprot
Match:
A0A6H5JSU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSU0_9PHAE)
HSP 1 Score: 57.4 bits (137), Expect = 1.570e-6
Identity = 34/62 (54.84%), Postives = 36/62 (58.06%), Query Frame = 1
Query: 1 VQFTGPQPSEGPGLLLRDLLSGSSVEARPVNLGRGRKKKYLRVPAAAKAIVSVDEPNKNGGI 186
+QF GPQPSEG G LL +LL GSSVEAR V L RGRKKK SV N N I
Sbjct: 52 IQFAGPQPSEGCGALLCNLLRGSSVEARAVELPRGRKKKIA---------TSVTPENGNNDI 104
BLAST of mRNA_P-canaliculata_contig10152.240.1 vs. uniprot
Match:
A0A6H5JDQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDQ6_9PHAE)
HSP 1 Score: 56.6 bits (135), Expect = 6.220e-5
Identity = 28/38 (73.68%), Postives = 30/38 (78.95%), Query Frame = 1
Query: 1 VQFTGPQPSEGPGLLLRDLLSGSSVEARPVNLGRGRKK 114
+QF GPQPSEG G LL LL G+SVEARPV L RGRKK
Sbjct: 100 IQFAGPQPSEGCGALLCHLLRGTSVEARPVELPRGRKK 137
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10152.240.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 5
0 1 Expect = 8.90e-10 / Id = 31.55 Expect = 7.02e-8 / Id = 76.92 Expect = 2.39e-7 / Id = 40.26 Expect = 1.57e-6 / Id = 54.84 Expect = 6.22e-5 / Id = 73.68 Sequence A0A6H5K0L1_9PHAE D7FZ47_ECTSI D8LCK7_ECTSI A0A6H5JSU0_9PHAE A0A6H5JDQ6_9PHAE back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 7 Model size 1487 Cds size 621 Stop 1 Start 1
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815588.2680554-UTR-P-canaliculata_contig10152:3784..3944 1622815588.2680554-UTR-P-canaliculata_contig10152:3784..3944 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10152 3785..3944 + 1693494152.8655334-UTR-P-canaliculata_contig10152:3784..3944 1693494152.8655334-UTR-P-canaliculata_contig10152:3784..3944 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10152 3785..3944 + 1622815588.2821977-UTR-P-canaliculata_contig10152:6134..6501 1622815588.2821977-UTR-P-canaliculata_contig10152:6134..6501 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10152 6135..6501 + 1693494152.8733351-UTR-P-canaliculata_contig10152:6134..6501 1693494152.8733351-UTR-P-canaliculata_contig10152:6134..6501 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10152 6135..6501 + 1622815588.2953124-UTR-P-canaliculata_contig10152:6520..6760 1622815588.2953124-UTR-P-canaliculata_contig10152:6520..6760 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10152 6521..6760 + 1693494152.8813343-UTR-P-canaliculata_contig10152:6520..6760 1693494152.8813343-UTR-P-canaliculata_contig10152:6520..6760 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10152 6521..6760 + 1622815588.391663-UTR-P-canaliculata_contig10152:8545..8644 1622815588.391663-UTR-P-canaliculata_contig10152:8545..8644 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10152 8546..8644 + 1693494152.945294-UTR-P-canaliculata_contig10152:8545..8644 1693494152.945294-UTR-P-canaliculata_contig10152:8545..8644 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10152 8546..8644 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815588.3096983-CDS-P-canaliculata_contig10152:6760..6868 1622815588.3096983-CDS-P-canaliculata_contig10152:6760..6868 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10152 6761..6868 + 1693494152.889303-CDS-P-canaliculata_contig10152:6760..6868 1693494152.889303-CDS-P-canaliculata_contig10152:6760..6868 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10152 6761..6868 + 1622815588.3242297-CDS-P-canaliculata_contig10152:7200..7401 1622815588.3242297-CDS-P-canaliculata_contig10152:7200..7401 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10152 7201..7401 + 1693494152.8976898-CDS-P-canaliculata_contig10152:7200..7401 1693494152.8976898-CDS-P-canaliculata_contig10152:7200..7401 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10152 7201..7401 + 1622815588.3434465-CDS-P-canaliculata_contig10152:7564..7663 1622815588.3434465-CDS-P-canaliculata_contig10152:7564..7663 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10152 7565..7663 + 1693494152.9103167-CDS-P-canaliculata_contig10152:7564..7663 1693494152.9103167-CDS-P-canaliculata_contig10152:7564..7663 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10152 7565..7663 + 1622815588.3579423-CDS-P-canaliculata_contig10152:7867..7933 1622815588.3579423-CDS-P-canaliculata_contig10152:7867..7933 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10152 7868..7933 + 1693494152.921234-CDS-P-canaliculata_contig10152:7867..7933 1693494152.921234-CDS-P-canaliculata_contig10152:7867..7933 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10152 7868..7933 + 1622815588.3727844-CDS-P-canaliculata_contig10152:8398..8545 1622815588.3727844-CDS-P-canaliculata_contig10152:8398..8545 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10152 8399..8545 + 1693494152.9350877-CDS-P-canaliculata_contig10152:8398..8545 1693494152.9350877-CDS-P-canaliculata_contig10152:8398..8545 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10152 8399..8545 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10152.240.1
>prot_P-canaliculata_contig10152.240.1 ID=prot_P-canaliculata_contig10152.240.1|Name=mRNA_P-canaliculata_contig10152.240.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=207bp
MDSGQVARMDDSGVDSQDDSDLNGDERYPEVELLHKVCDFEGRPSLDGGS back to top mRNA from alignment at P-canaliculata_contig10152:3785..8644+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10152.240.1 ID=mRNA_P-canaliculata_contig10152.240.1|Name=mRNA_P-canaliculata_contig10152.240.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=4860bp|location=Sequence derived from alignment at P-canaliculata_contig10152:3785..8644+ (Pelvetia canaliculata dioecious)GTCCAGTTCACTGGCCCTCAGCCCAGCGAAGGGCCTGGCTTGCTTCTCCG
CGATCTACTGTCGGGGAGTTCTGTGGAAGCCCGCCCGGTCAACCTGGGGC
GCGGGCGAAAGAAGAAATACCTCAGAGTCCCTGCCGCGGCGAAGGCCATC
GTCAGCGTCG GTGAGTAGATCGTTCGTGCTTCTTGCGACAAGCCGGGTCG
CAGGCCAATAAGGTGTGGATAGCACACCCTCTCCACGGGGTGCTGCGGCT
CGACGCGTTTGGTAGGCACCACTCTACGCTTTGAGCTTGTCAAGGTACTA
TTTACTCACTGTCAGTACCGTCGTTGTCCTTTAAGGCACTGGTCTGGTGT
GGTATGACTGGTTTCTTTACATTTCTCTTATAATATTAGTGTCTGCTGTT
GCTGTTACTAATACTACCATGGTACACCAAAAGTACTTGTTTCTAGTATT
TTTCTACCATTATTGTCCCGATATACACTGTGCAGGGGGACCGATAGTCA
ACCTCGCAGCTTGATTGTGGTACTACAGTAAACAACTTGTTACAGCAGTA
AACTTGGTGCAGTAAACAAATGCGGTACACGCGCGCGCGCACAAAGGTAA
TGAGGGCTTCAGTAAGATTTTTACAAGTAGAGAGAGTGTGTCCCCTTTGT
CGCGTCTGATCAGAGGTTTCTGTAAAAAGTATCATTGATCCCCCCTTGGT
ATTAAGGGATCAATGCCAATGGCATAGAATGGCTAGCATGACAGGGCCGG
ATTGCGCGGTTATGTGCAATTTAATAAATACACACACACACACACAGATA
GGCAAAAACGTGGGTGATGATAGAAGAATCTGCCTCTCCCGTGGGGGGTG
GACGAACACATACATTGAATTCAACCATGACAGCCAGCTCTATTATAGAA
AAAGAAAATGCGAGGGTCTAGAGAGCGGACAAACAAAACAAACAAAAAAT
AAGAAGGCATGGCGGAGACATCCAAACTATGGGCACAAGTCAAGTATCGC
CATCATCGTGTACTGGCATAGATATATAGGCACAACTTCCAAATGAAATG
TCGGAGAACGAATCACTAATAAACACTGCAAAGGTCGCGGCGTGCTACCG
ATGCCTGTCACGCAGAGGGTCGCCGCCTAAGACGTTATCTACACTATTGC
AAACAGTTTCACGGCTGCTGCTACAGTCGTGATTGTTGGCCCAACCTTGA
TGAAAGGTAGTGAGAGTGCCCCATGAGCCCATCCAGCAGCAGCAGCGAAC
TCTAATAATGTAACAGCGTGGCGTTGTTGAAACCCTTCACTAATTTCGTT
TTCTCCCGGCAGGTTTTGGACGCCTCTGTTTCTCGATTATCCTACAAGCG
CCCATGAAACGTCGCCTGCTCTCTTCCATGGCATTGTACCGCATTCGCCC
TTATGTAACCGTAATGCTAAGGTTATCTTGCACCTCCCCCCCCCCCCCCC
CCCCCCCCCCCCACAAACACCCCAGCGCCCAAACCCCCCCCCCCGCCCCC
CCCCCCCCCTCCTTTTCCTTTCGGCCCCGACTCCCCAACCCCTCACGTGT
TGCGGGGTACCCCTTCAAAACGACCTCGGGGGTGTAGCCGTGTTGCATGG
ACGAACACGACCCCGCCGCGCCCGCCCATCGGTACGATGCTCTCGTCCGA
CAGACGCTTCCGACTTCTGGCAGTCGGTTGTAGGCGAGGTTGCGGTAGTC
TCACTATCAACAACCCCGCTTCCCGACGAACGTGCACTAGAGCTGGGTTA
TAAATGAACCACATGACGCGGCGTTGGGAACAGCAAACGTATTCGCACTG
ACAAGGCATAACGGCGCGCGTAGCAAGGCGAAACGGAATGCTACGCATAG
TGAGGAGGATCCCTGGGTATCGAGCACGAACGGTAGCCTGGCCGGTCGAT
CTTGAAACAAATTTGGTTTGATCAAGCTCCAGAGGAGCAAGCTGGGAGGG
GGGGGGGGCTACGGGGGCCCATCTTCTCTTCTCTTGTTATCCACACGCGT
GACAGATTCACCGCCCCCATTGTACAAGAGCTCTGCACCGTTTCAACCTC
CTCTACAGTTCCATACTCCGCATTGACTTGACCTTGCCCGATTCCCCGTG
TGATCTCCACACTTTGCTTGGTAGTATTCTTGCGAGTGACTGAACCAACA
CCAATAGGGGTCACAGGGGTCTCTCCGCTATTCACGTTTTTGGCATCGTG
CGAGAAGTACGGCTTGTTTTTCGCAAAAAAAAAAAAAAAAAGGGCGTGGG
GAGAGGTACTGACGAAAAGTTATACATATACTTCGAAGTATATATAAAGC
ACCTCCCCCTATATGAAGCACCCTCCCCCCGTTTTGTTGCTGCTAATTAG
ATGAGCCCAACAAGAACGGCGGGATCGACGCAACAAGGGGCGAAACAAGC
AGTCTAGACACCGTCAGCGACAACGAGTGCAACAAGGGCGACGTCGACGT
TACTAAGCCAAACGAGATCGACGTAATAACACACGGCGGCCTCGCCCTTC
CAGCCTGGCATCGTTCCGGGATCGAAGCCCTTGCAACCCGGGAGAGCAAG
TGCGATCGGCCGGTGATGATGGCGTTATCCCAGCCGTCCGTGGGTCTGGC
TGAAGCAATGGATCAAACTTCGTCGGCCCTGACACCCGGACCAGAAAGTC
TTCGGCCGCTCGACGACGTCTGGAGCTGTTTTGAGATCCCCCAGGCCTCG
CCTCGAGATTGCGCGAA CCAGACAATGACCGTGGACGGCGGCAGCGCATT
TGACCTGCTGACCATCACCGGTGACGAGAAGGACGACTGCGGGCTTGCCT
GGCGTCGGGGCTTGACCAGTTCGGGGAGCGGCGACTACGATCCTCTATCA
GATGCATCTGAGCTCCTCAGAACGGCCGGGCTGTTGGACTCCAGCTGCGT
GTCGGAGGACAGTAGCATATATGGAGACAGTTGGACGCATAAGTCATTTA
CCGTCGACGAAAACGCCGCTAATCTA ATGGACAGCGGTCAGGTCGCCAGG
ATGGACGACAGTGGGGTAGACTCCCAAGACGATAGCGACCTTAACGGGGA
CGAGCGCTATCCGGAGGTTGAACTCCTGCATAAG GTCAGGGTCGTCAGCG
ATCGGTGTGTTCAGGGCATTGGTCGTCAACGGTTCCTTTTTGTTCGTTAG
TAGCTGCAATCACGGCGACGACGTACAAATAAAGAAGAAATGGTGTCAGC
GTTTCTTTAAAAAAAACTCTTGTGGTGTTTTTTTGGTGATGATGTAGACA
GCAGGTTTTTTAAACCGTCCGTGACTCGATTCCTGTGGCGGAAAGACCAT
TCGGCGCCGAGGCTGTGTGGTTCTGCCGCACAAACATGCCTTCTCCGAAG
AATACTATGCTGCTCCGAACGTTCGTGTAACGCTTTTGGATTTTTCTCCC
CACCCACGACATGAAGGTTTGTGATTTCGAGGGGCGACCGTCACTCGACG
GTGGCTCCTGTCGTATGGCTACAGAACCACCTCGTGGGGGTCAATCCCAC
CTCTTGTTGAAGGGAATCAAGGCCGTGGGCCAGGGTGATTGTGGGATGCC
CTCTATCTCCGCCTTTTTCAGCGCGGGCCCTTCGCACAAGACGGACAGAA
TAATCAGCCATGTGAAG GTCAGGCTTACAATCGGTTTTAGGGGGATTCCC
GCAGAGATCCCTTTCAGAGCATTCGAATGCATTCTTGCTGGCGTGTGGTT
CGTGCCTTTGTGCAGTATGGTTCCTCACCGCGGGGAGTGGTTCCTGGTGC
CCTTGATACGCCGACCGATCGATCCACAAGGTGGGGCACGATGGGGTCAT
CCAAGCGGCAGTCTTCTACCCAAGCATGCAAGTTCTATGGCCGGATGTCT
ACGCTGCCAAGAACGTCCAGGAAGTTGAG GTAAGGCGAACATTTCGGTGC
GCGTCTCGGATGCCCTCAGGACTCGATCCAGATGTGATAAAGCGGCATCG
AGCCGCTGCGACGTCCACCGCTGTCCTACTACACACTTAACACGCATTTC
GATAATAAGCGACTCGAAGACGCTGACCAGAGAGCGGATCGCTCTCAACA
CCATCAACGCCGTGCATACCATCATCATATCAGGTGGACGTAGCGGTCGA
CCTTCGGTGGGGGGACGAGGAAATCAACTGCGCTGGTCCAAGCCTCAAG G
TGTGTTCCATTGAGTTGAGACAAACTGGGCCTGACTGAAGACAGCAGACG
CCGCAGCCCCCCACCATTGTTATCGAATCGGTTTCAGTCCTATGGTTTAT
TCAAATAACGTTTGATCCGGAAGGCGCGCGGCTGGGGGGGGGGGGGGGGG
GTGCCGGCCCCCGCCCCGGGGAACCCCCCCCCCCCCGTGCCCCCTGCCCG
CGGGGCCCCGCCCCCCCGCCGACGGCGGGNNNNNNNNNNTTTGAACCTAG
GTCGGGGCGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTAG
CGGTCTATGCTCAGGGGAAAACCCACCTTCCCGTTCACCCTGTTCGCTTG
AGCTCAGCCCCTGTGCAGAAGAGGGGCGGTCACAACGTTTCTGACGATGC
CACACAGGCATGCAAAAAAAAAAAAATGCGGTTTGCTTTTTTCCTGTCTT
TTGGTACATATCAGGTCACTTACCGACGCCCCCCCGTTCAAGCTACCGAG
GCAACAGCGGCGAGCATGATCGTATGCCGACGGATATCGCCGACGCCGAA
CGATGTCCCCGCCGAAGGGGGTACGATGAGGGACGACTACTGCGGCGATT
TTTTCATGTGA TATCGCGTCAGCTGTTTCTCGTTTTTGGCCTCCCCGACA
GCGCGGCTTAGGTTTAGGCGTAGAAGCCCCGTGCGCATGCTGTGATAGTA
TGGTTTCGTG back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10152:3785..8644+
>mRNA_P-canaliculata_contig10152.240.1 ID=mRNA_P-canaliculata_contig10152.240.1|Name=mRNA_P-canaliculata_contig10152.240.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1242bp|location=Sequence derived from alignment at P-canaliculata_contig10152:3785..8644+ (Pelvetia canaliculata dioecious) back to top