mRNA_P-canaliculata_contig10149.238.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10149.238.1
Unique NamemRNA_P-canaliculata_contig10149.238.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig10149.238.1 vs. uniprot
Match: D7FT55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT55_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 4.690e-54
Identity = 95/170 (55.88%), Postives = 111/170 (65.29%), Query Frame = 1
Query:   67 TCYDEDEAQHITQLMEGTCDYNIFMCCWTENDGEGMEDNTDVCRYTD--SSQTTRDYPGDSEGEVHCHGFGWPEKSDYPAYIEPLYNYVRNFDHKDYRGYFGSIEGAPECACIEDMPVVSRADCTTFSA-----AGLTACTGNDLRKHYRGRMGSPGGDLDFNLVTACDN 555
            TC +ED    +     G+C +N +MCCWTENDGEGM DNTDVCR  D  S   T ++PGDSEGEVHCHGF WPE +    YI  L  +V+NFDH+D RGY+G+IEGAP C CIE+MPVVS ADCTT+          TACT NDLR  Y      P G+L  NLV  CDN
Sbjct:  308 TCDNED----VPDYDYGSCSHNTYMCCWTENDGEGMADNTDVCRVVDYPSMGETLEFPGDSEGEVHCHGFVWPEDAT-DKYIHLLSQFVQNFDHRDRRGYYGNIEGAPMCGCIEEMPVVSEADCTTYDTDPEREGKFTACTKNDLRTRYEAEY--PTGEL-ANLVDTCDN 469          
BLAST of mRNA_P-canaliculata_contig10149.238.1 vs. uniprot
Match: D7G2N0_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G2N0_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 2.680e-52
Identity = 90/153 (58.82%), Postives = 105/153 (68.63%), Query Frame = 1
Query:  118 TCDYNIFMCCWTENDGEGMEDNTDVCRYTD--SSQTTRDYPGDSEGEVHCHGFGWPEKSDYPAYIEPLYNYVRNFDHKDYRGYFGSIEGAPECACIEDMPVVSRADCTTFS-----AAGLTACTGNDLRKHYRGRMGSPGGDLDFNLVTACDN 555
            TC++N +MCCWTENDG+GM DNTDVCR  D  S   T +YPG+SEGEVHCHGF WPE +    YI  L  +V++FDH+D RGYFG+IEGAP C CIE+MP VS ADCTT+          TACT NDLR  Y      P G+LD NLV  CDN
Sbjct:  335 TCNHNTYMCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGESEGEVHCHGFVWPEDAT-DKYIHLLAQFVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTNNDLRTRYEEEY--PMGELD-NLVGECDN 483          
BLAST of mRNA_P-canaliculata_contig10149.238.1 vs. uniprot
Match: D7G2N2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2N2_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 2.220e-50
Identity = 90/153 (58.82%), Postives = 105/153 (68.63%), Query Frame = 1
Query:  118 TCDYNIFMCCWTENDGEGMEDNTDVCRYTD--SSQTTRDYPGDSEGEVHCHGFGWPEKSDYPAYIEPLYNYVRNFDHKDYRGYFGSIEGAPECACIEDMPVVSRADCTTFS-----AAGLTACTGNDLRKHYRGRMGSPGGDLDFNLVTACDN 555
            TC++N +MCCWTENDG+GM DNTDVCR  D  S   T +YPG+SEGEVHCHGF WPE +    YI  L  +V++FDH+D RGYFG+IEGAP C CIE+MP VS ADCTT+          TACT NDLR  Y      P G+LD NLV  CDN
Sbjct:  292 TCNHNTYMCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGESEGEVHCHGFVWPEDAT-DKYIHLLAQFVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTKNDLRTRYEEEY--PMGELD-NLVGECDN 440          
BLAST of mRNA_P-canaliculata_contig10149.238.1 vs. uniprot
Match: D7FT53_ECTSI (Imm downregulated 17 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT53_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 3.070e-49
Identity = 76/164 (46.34%), Postives = 107/164 (65.24%), Query Frame = 1
Query:   70 CYDEDEAQHITQLMEGTCDYNIFMCCWTEND-GEGMEDNTDVCRYTDSSQTTRDYPGDSEGEVHCHGFGWPEKSDYPAYIEPLYNYVRNFDHKDYRG-YFGSIEGAPECACIEDMPVVSRADCTTFSAAGLTACTGNDLRKHYRGRMGSPGGDLDFNLVTACDN 555
            C   DE   + +L++GTC+++ +MCC+T +D GEG+  NTDVC          + PGDSEG V+CHGF WPE +D   +I PLY+YV+N    +  G Y+G++EGAPEC CIE+MP VS A+C+ FS  G+  C    L   Y GR+ +P G+++ NLV +CDN
Sbjct:   21 CSTYDEDLEVAKLLDGTCEWDTYMCCYTNHDSGEGVTANTDVCSVPSEGL---EMPGDSEGPVYCHGFAWPEGADVNNHILPLYHYVKNIGRTEEEGGYYGNVEGAPECGCIEEMPQVSFAECSRFSIDGIGECGEGGLYSQYNGRLDAPYGEMEHNLVRSCDN 181          
BLAST of mRNA_P-canaliculata_contig10149.238.1 vs. uniprot
Match: D7FT54_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT54_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 8.250e-46
Identity = 75/165 (45.45%), Postives = 104/165 (63.03%), Query Frame = 1
Query:   70 CYDEDEAQHITQLMEGTCDYNIFMCCWTENDG-EGMEDNTDVCRYTDSSQ--TTRDYPGDSEGEVHCHGFGWPEKSDYPAYIEPLYNYVRNFDHKDYRGYFGSIEGAPECACIEDMPVVSRADCTTFSAAGLTACTGNDLRKHYRGRMGSPGGDLDFNLVTACDN 555
            C   DE  H+  L+   C++N +MCCWT NDG +GM  NTDVCR  D  +   + ++P DSEG V+CHGFGW + +D    I PLY+ V N    +  GY+G++EGAP+C C+E+MPVVS ++C+ F   G+T C  + L  +Y  R+  P G L+ NLV  CDN
Sbjct:   95 CSTYDEDVHVAYLLPEMCEWNTYMCCWTGNDGPDGMTSNTDVCRVWDYPEEGNSLEFPRDSEGSVYCHGFGWADGADVNTNILPLYHSVINTGRTEEGGYYGNVEGAPQCGCLEEMPVVSFSECSRFDGDGITDCGEHGLYSNYVSRIDEPNGPLEDNLVRICDN 259          
BLAST of mRNA_P-canaliculata_contig10149.238.1 vs. uniprot
Match: A0A6H5L9G6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9G6_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 3.540e-45
Identity = 73/165 (44.24%), Postives = 104/165 (63.03%), Query Frame = 1
Query:   67 TCYDEDEAQHITQLMEGTCDYNIFMCCWTEND-GEGMEDNTDVCRYTDSSQTTRDYPGDSEGEVHCHGFGWPEKSDYPAYIEPLYNYVRNFDHKDYRG-YFGSIEGAPECACIEDMPVVSRADCTTFSAAGLTACTGNDLRKHYRGRMGSPGGDLDFNLVTACDN 555
            T YDED    + +L++ TC+++ +MCC+T +D GEG+  NTDVC               +EG V+CHGF WP+ +D   +I PLY+YV+N    +  G Y+GS+EGAPEC CIE+MP VS A+C+ F   G+  C    L   Y GR+G+P G+++ NLV +CDN
Sbjct:   29 TTYDED--LEVAKLLDDTCEWDTYMCCFTNHDSGEGVTANTDVCSVP------------NEGSVYCHGFAWPDGADVNNHILPLYHYVKNIGRTEEEGGYYGSVEGAPECGCIEEMPQVSFAECSRFDIDGIVGCGEGGLYSQYNGRLGAPYGEMEHNLVRSCDN 179          
BLAST of mRNA_P-canaliculata_contig10149.238.1 vs. uniprot
Match: A0A6H5L319_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L319_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 1.760e-41
Identity = 72/170 (42.35%), Postives = 103/170 (60.59%), Query Frame = 1
Query:   70 CYDEDEAQHITQLMEGTCDYNIFMCCWTENDG-EGMEDNTDVCRYTDSSQTTRDY--PGDSEGEVHCHGFGWPEKSDYPAYIEPLYNYVRNFDHKDYRGYF-----GSIEGAPECACIEDMPVVSRADCTTFSAAGLTACTGNDLRKHYRGRMGSPGGDLDFNLVTACDN 555
            C   +E   + +L++ TC+++ +MCCWT NDG +GM  N+DVCR  D  +    +  P +SEG V CHGF W E +D   +I PLY+YV+N    +  G++      S+EG PEC CIE++P VS ++C+ +S  G+  C  N L   YRG +G P G +D NLV  CDN
Sbjct:   29 CSTYEEHVEVAKLLDSTCEWDPYMCCWTGNDGADGMTANSDVCRVLDYPEEGDSFEMPRESEGFVCCHGFAWAEGADVDTHILPLYHYVKNVGRTEEAGFYEMKLPDSVEGTPECGCIEEIPSVSCSECSRYSWEGIAGCGNNGLLSQYRGCLGEPCGPMDDNLVRTCDN 198          
BLAST of mRNA_P-canaliculata_contig10149.238.1 vs. uniprot
Match: D7G8D2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8D2_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 4.440e-38
Identity = 80/190 (42.11%), Postives = 106/190 (55.79%), Query Frame = 1
Query:    1 LLTALSTTAASSSTSSEREMDLTCYDEDEAQHITQLMEGTCDYNIFMCCWTENDGEGMEDNTDVCRYTDSSQTTRDYPGDSEGEVHCHGFGWPEKSDYPAYIEPLYNYVRNFDHKDYRGYFGSIEGAPECACIEDMPVVSRADCTTFSAAGLT-----ACTGNDLRKHYRGRMGSPGGDLDFNLVTACDN 555
            LL A + +A +SS  ++ E     Y  DE + +       CDYN +MCCW   +G  ++DNTDVC Y        ++PGDSEG VHCHGF WPE +    +I+ L   V   +H D + Y G+I GAP C C+E+MP VSRADCT +  A L      AC+ NDLR+ Y+  +   G   D  LV  CDN
Sbjct:   19 LLLAPTVSARTSSAFADAENSFYDYSGDEFELVKNFDFNQCDYNTWMCCWDGRNGLAVKDNTDVCSYRGE-----EFPGDSEGPVHCHGFVWPENAS-DDFIKYLALDVAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGSDFMACSKNDLRRAYK-ELYPTGRGRDL-LVKKCDN 200          
BLAST of mRNA_P-canaliculata_contig10149.238.1 vs. uniprot
Match: D7G8C5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C5_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 8.740e-38
Identity = 80/190 (42.11%), Postives = 106/190 (55.79%), Query Frame = 1
Query:    1 LLTALSTTAASSSTSSEREMDLTCYDEDEAQHITQLMEGTCDYNIFMCCWTENDGEGMEDNTDVCRYTDSSQTTRDYPGDSEGEVHCHGFGWPEKSDYPAYIEPLYNYVRNFDHKDYRGYFGSIEGAPECACIEDMPVVSRADCTTFSAAGLT-----ACTGNDLRKHYRGRMGSPGGDLDFNLVTACDN 555
            LL A + +A +SS  ++ E     Y  DE + +       CDYN +MCCW   +G  ++DNTDVC Y        ++PGDSEG VHCHGF WPE +    +I+ L   V   +H D + Y G+I GAP C C+E+MP VSRADCT +  A L      AC+ NDLR+ Y+  +   G   D  LV  CDN
Sbjct:   83 LLLAPTVSARTSSAFADAENSFYDYSGDEFERVKNFDFNQCDYNTWMCCWDGRNGLAVKDNTDVCSYRGE-----EFPGDSEGPVHCHGFVWPENAS-DDFIKYLALDVAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGSDFMACSKNDLRRAYK-ELYPTGRGRDL-LVKKCDN 264          
BLAST of mRNA_P-canaliculata_contig10149.238.1 vs. uniprot
Match: D8LHS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHS4_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 1.100e-26
Identity = 61/136 (44.85%), Postives = 79/136 (58.09%), Query Frame = 1
Query:  139 MCCWTENDGEG-MEDNTDVCRYTDSSQTTRDYPGDSEGEVHCHGFGWPEKS--DYPAYI--EPLYNYVRNFDHKDYRGYFGSIEGAPECACIEDMPVVSRADCTTFSAAGLT-----ACTGNDLRKHYRGRMGSPG 516
            MCCW+   GE  + DNTDV RY  +     ++PG+SEG+VHCHG  WPE S  +Y  Y+  +  YN+     H + +GYFG I GAP C C+E MP VSR+DC+ +  A L      AC  NDLR  +R     PG
Sbjct:    1 MCCWSSRVGEEPVSDNTDVYRYGST-----EFPGESEGDVHCHGLVWPEGSSDEYIIYLALDVAYNH-----HVEEKGYFGHIPGAPVCDCLERMPEVSRSDCSQYRPAHLKGSDFMACPKNDLRPIWRPIHNGPG 126          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10149.238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT55_ECTSI4.690e-5455.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2N0_ECTSI2.680e-5258.82Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
D7G2N2_ECTSI2.220e-5058.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FT53_ECTSI3.070e-4946.34Imm downregulated 17 n=1 Tax=Ectocarpus siliculosu... [more]
D7FT54_ECTSI8.250e-4645.45Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5L9G6_9PHAE3.540e-4544.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L319_9PHAE1.760e-4142.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8D2_ECTSI4.440e-3842.11Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G8C5_ECTSI8.740e-3842.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LHS4_ECTSI1.100e-2644.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10149contigP-canaliculata_contig10149:6783..8648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score187.6
Seed ortholog evalue5.3e-45
Seed eggNOG ortholog2880.D7FT55
EggNOG OGs2E0FN@1,2S7W7@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size555
Cds size555
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815588.1438282-CDS-P-canaliculata_contig10149:6782..71501622815588.1438282-CDS-P-canaliculata_contig10149:6782..7150Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10149 6783..7150 +
1693494152.831917-CDS-P-canaliculata_contig10149:6782..71501693494152.831917-CDS-P-canaliculata_contig10149:6782..7150Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10149 6783..7150 +
1622815588.1576304-CDS-P-canaliculata_contig10149:8461..86481622815588.1576304-CDS-P-canaliculata_contig10149:8461..8648Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10149 8462..8648 +
1693494152.8454652-CDS-P-canaliculata_contig10149:8461..86481693494152.8454652-CDS-P-canaliculata_contig10149:8461..8648Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10149 8462..8648 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10149.238.1prot_P-canaliculata_contig10149.238.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10149 6783..8648 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10149.238.1

>prot_P-canaliculata_contig10149.238.1 ID=prot_P-canaliculata_contig10149.238.1|Name=mRNA_P-canaliculata_contig10149.238.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=185bp
LLTALSTTAASSSTSSEREMDLTCYDEDEAQHITQLMEGTCDYNIFMCCW
TENDGEGMEDNTDVCRYTDSSQTTRDYPGDSEGEVHCHGFGWPEKSDYPA
YIEPLYNYVRNFDHKDYRGYFGSIEGAPECACIEDMPVVSRADCTTFSAA
GLTACTGNDLRKHYRGRMGSPGGDLDFNLVTACDN
back to top

mRNA from alignment at P-canaliculata_contig10149:6783..8648+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10149.238.1 ID=mRNA_P-canaliculata_contig10149.238.1|Name=mRNA_P-canaliculata_contig10149.238.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1866bp|location=Sequence derived from alignment at P-canaliculata_contig10149:6783..8648+ (Pelvetia canaliculata dioecious)
TTGTTGACAGCGCTTTCGACCACGGCTGCGTCATCCTCGACTTCCTCGGA AAGAGAAATGGACCTGACATGCTACGACGAGGACGAGGCGCAGCACATCA CTCAACTCATGGAGGGTACATGTGATTATAACATCTTCATGTGCTGCTGG ACGGAGAACGATGGCGAGGGTATGGAGGACAACACTGATGTCTGCCGCTA CACTGACTCCTCTCAGACTACTCGTGACTACCCTGGAGACAGCGAGGGAG AGGTGCACTGTCATGGGTTCGGCTGGCCCGAAAAATCGGATTACCCTGCA TACATCGAGCCCTTGTACAACTACGTGCGGAACTTCGACCACAAGGACTA CCGGGGCTACTTTGGGTCGTGAGTCCTGATACTTGTACATTAATGAGATA TTTCAATATTTGAGTTACTACCTAGAATGTCTGTCAAAAGCAGCGATAAC CACACGGGGCTAGTCTCGCTCAACTCACTGAGTACTTAGTAACTGTTGCA TTGAACCATTGCCCACCCATCCGTTGCTGCCCACAACCCTTCAATGGTTA TCTGACCGAAGAGTGCCGAATGCGCCAGAATGCGGTTGTATTGAAGACAT GCCTGTGGTGAGCCGCGCCGACTGCAGCACCTACAGCAGGGACGGGCTCA CGGCCTGCAAGAACAACGACCTCATCAGGTACTATAATGTTATCCTGGGC AAGTTCAACGGCGAACTGTCATTTAACCTCCTCGGGACGTGCGACAACGT CAACGGTCCCGTTTTCTCCGATAGCGAGACGGGAGGAACCTCCTCAGCCT CCGTTGAAGACGCTACCTCGTTGACAGAGAACGAGGGAGCAACGACCGTA GACATGAGCCCCGATGTTCCCGAGTACGACGAGGATGAGGCACTGGCTGC TCTACTCGATGATACGTGCGACTACAACCTCTTTATGTGCTGCTGGACGC AGAACGACGATCAGGGCATGGCGGACAACACAGGTGGGATCCAACCCAAA GTATCTAAGCTCTAGTCGCTTGACCTCTAGAGGCATAGTAAGGACTTCTT GTGGCGCGGGTTCCTGTGCCTACTCCTGCGCGCTTCTTATTTCAGCATTT GAGTTCGTGTTTCATAAGTAACGATTGTTGTCGTCGGCCAGTAATTAAAG CGCTCTTTGCGACTTCCTCTTATCCATGGGTGTCCCCTTCGCGTTGACCT CAAGTCTTGGCCATCCCGCCTTCTCGTGTGGTGGCAGATGTGTGTCGCTA CACCGATAGTACGTACGCAGGCCGCGACTACCCCGGCGAAAGCGAAGGAG ACGTTCATTGCCACGGGTTTGGCTGGAATGAAGGAGCGGACTACCTGACT CAAATTCTCAGCCTTTACCACTTTGTGAGGCGTTTTGACCACAGAAACCA GAGGGGCTACTTCGGGAGGTAACGCCAAAACCCAGCCTCGCATGAATAAT CTATTCTGCGTCCGTGGCTCCTCTAAATAAAATCTCAATGAGCAAAAAAC CTTTACCCTTTTTGCTTCCCTCCTTAGAATTACTCGAGGACAATAAATCC ATATAAAGAAAAAAACTAGTCAAGAAATAGTCATGTTTCAAGAACTACCA TCTTCCAGCGAAGGAGCAGAAGCCTCACACCATTGCCGCCGTATTCAATA AATCGCCGTGAACTCGCCCCCGTCCGCAGCATCGAGGGTGCGCCTGAGTG CGCGTGCATCGAGGACATGCCAGTGGTGAGCCGCGCGGACTGCACCACGT TCAGCGCTGCCGGACTCACGGCGTGTACTGGCAACGACCTCCGTAAACAC TACAGGGGAAGGATGGGTTCTCCAGGAGGGGACCTGGACTTCAATCTTGT TACTGCCTGTGACAAC
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig10149:6783..8648+

>mRNA_P-canaliculata_contig10149.238.1 ID=mRNA_P-canaliculata_contig10149.238.1|Name=mRNA_P-canaliculata_contig10149.238.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1110bp|location=Sequence derived from alignment at P-canaliculata_contig10149:6783..8648+ (Pelvetia canaliculata dioecious)
TTGTTGACAGCGCTTTCGACCACGGCTGCGTCATCCTCGACTTCCTCGGA
AAGAGAAATGGACCTGACATGCTACGACGAGGACGAGGCGCAGCACATCA
CTCAACTCATGGAGGGTACATGTGATTATAACATCTTCATGTGCTGCTGG
ACGGAGAACGATGGCGAGGGTATGGAGGACAACACTGATGTCTGCCGCTA
CACTGACTCCTCTCAGACTACTCGTGACTACCCTGGAGACAGCGAGGGAG
AGGTGCACTGTCATGGGTTCGGCTGGCCCGAAAAATCGGATTACCCTGCA
TACATCGAGCCCTTGTACAACTACGTGCGGAACTTCGACCACAAGGACTA
CCGGGGCTACTTTGGGTCTTGTTGACAGCGCTTTCGACCACGGCTGCGTC
ATCCTCGACTTCCTCGGAAAGAGAAATGGACCTGACATGCTACGACGAGG
ACGAGGCGCAGCACATCACTCAACTCATGGAGGGTACATGTGATTATAAC
ATCTTCATGTGCTGCTGGACGGAGAACGATGGCGAGGGTATGGAGGACAA
CACTGATGTCTGCCGCTACACTGACTCCTCTCAGACTACTCGTGACTACC
CTGGAGACAGCGAGGGAGAGGTGCACTGTCATGGGTTCGGCTGGCCCGAA
AAATCGGATTACCCTGCATACATCGAGCCCTTGTACAACTACGTGCGGAA
CTTCGACCACAAGGACTACCGGGGCTACTTTGGGTCCATCGAGGGTGCGC
CTGAGTGCGCGTGCATCGAGGACATGCCAGTGGTGAGCCGCGCGGACTGC
ACCACGTTCAGCGCTGCCGGACTCACGGCGTGTACTGGCAACGACCTCCG
TAAACACTACAGGGGAAGGATGGGTTCTCCAGGAGGGGACCTGGACTTCA
ATCTTGTTACTGCCTGTGACAACCATCGAGGGTGCGCCTGAGTGCGCGTG
CATCGAGGACATGCCAGTGGTGAGCCGCGCGGACTGCACCACGTTCAGCG
CTGCCGGACTCACGGCGTGTACTGGCAACGACCTCCGTAAACACTACAGG
GGAAGGATGGGTTCTCCAGGAGGGGACCTGGACTTCAATCTTGTTACTGC
CTGTGACAAC
back to top