mRNA_P-canaliculata_contig10149.238.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig10149.238.1 vs. uniprot
Match: D7FT55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT55_ECTSI) HSP 1 Score: 187 bits (475), Expect = 4.690e-54 Identity = 95/170 (55.88%), Postives = 111/170 (65.29%), Query Frame = 1 Query: 67 TCYDEDEAQHITQLMEGTCDYNIFMCCWTENDGEGMEDNTDVCRYTD--SSQTTRDYPGDSEGEVHCHGFGWPEKSDYPAYIEPLYNYVRNFDHKDYRGYFGSIEGAPECACIEDMPVVSRADCTTFSA-----AGLTACTGNDLRKHYRGRMGSPGGDLDFNLVTACDN 555 TC +ED + G+C +N +MCCWTENDGEGM DNTDVCR D S T ++PGDSEGEVHCHGF WPE + YI L +V+NFDH+D RGY+G+IEGAP C CIE+MPVVS ADCTT+ TACT NDLR Y P G+L NLV CDN Sbjct: 308 TCDNED----VPDYDYGSCSHNTYMCCWTENDGEGMADNTDVCRVVDYPSMGETLEFPGDSEGEVHCHGFVWPEDAT-DKYIHLLSQFVQNFDHRDRRGYYGNIEGAPMCGCIEEMPVVSEADCTTYDTDPEREGKFTACTKNDLRTRYEAEY--PTGEL-ANLVDTCDN 469
BLAST of mRNA_P-canaliculata_contig10149.238.1 vs. uniprot
Match: D7G2N0_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G2N0_ECTSI) HSP 1 Score: 183 bits (464), Expect = 2.680e-52 Identity = 90/153 (58.82%), Postives = 105/153 (68.63%), Query Frame = 1 Query: 118 TCDYNIFMCCWTENDGEGMEDNTDVCRYTD--SSQTTRDYPGDSEGEVHCHGFGWPEKSDYPAYIEPLYNYVRNFDHKDYRGYFGSIEGAPECACIEDMPVVSRADCTTFS-----AAGLTACTGNDLRKHYRGRMGSPGGDLDFNLVTACDN 555 TC++N +MCCWTENDG+GM DNTDVCR D S T +YPG+SEGEVHCHGF WPE + YI L +V++FDH+D RGYFG+IEGAP C CIE+MP VS ADCTT+ TACT NDLR Y P G+LD NLV CDN Sbjct: 335 TCNHNTYMCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGESEGEVHCHGFVWPEDAT-DKYIHLLAQFVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTNNDLRTRYEEEY--PMGELD-NLVGECDN 483
BLAST of mRNA_P-canaliculata_contig10149.238.1 vs. uniprot
Match: D7G2N2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2N2_ECTSI) HSP 1 Score: 182 bits (462), Expect = 2.220e-50 Identity = 90/153 (58.82%), Postives = 105/153 (68.63%), Query Frame = 1 Query: 118 TCDYNIFMCCWTENDGEGMEDNTDVCRYTD--SSQTTRDYPGDSEGEVHCHGFGWPEKSDYPAYIEPLYNYVRNFDHKDYRGYFGSIEGAPECACIEDMPVVSRADCTTFS-----AAGLTACTGNDLRKHYRGRMGSPGGDLDFNLVTACDN 555 TC++N +MCCWTENDG+GM DNTDVCR D S T +YPG+SEGEVHCHGF WPE + YI L +V++FDH+D RGYFG+IEGAP C CIE+MP VS ADCTT+ TACT NDLR Y P G+LD NLV CDN Sbjct: 292 TCNHNTYMCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGESEGEVHCHGFVWPEDAT-DKYIHLLAQFVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTKNDLRTRYEEEY--PMGELD-NLVGECDN 440
BLAST of mRNA_P-canaliculata_contig10149.238.1 vs. uniprot
Match: D7FT53_ECTSI (Imm downregulated 17 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT53_ECTSI) HSP 1 Score: 166 bits (421), Expect = 3.070e-49 Identity = 76/164 (46.34%), Postives = 107/164 (65.24%), Query Frame = 1 Query: 70 CYDEDEAQHITQLMEGTCDYNIFMCCWTEND-GEGMEDNTDVCRYTDSSQTTRDYPGDSEGEVHCHGFGWPEKSDYPAYIEPLYNYVRNFDHKDYRG-YFGSIEGAPECACIEDMPVVSRADCTTFSAAGLTACTGNDLRKHYRGRMGSPGGDLDFNLVTACDN 555 C DE + +L++GTC+++ +MCC+T +D GEG+ NTDVC + PGDSEG V+CHGF WPE +D +I PLY+YV+N + G Y+G++EGAPEC CIE+MP VS A+C+ FS G+ C L Y GR+ +P G+++ NLV +CDN Sbjct: 21 CSTYDEDLEVAKLLDGTCEWDTYMCCYTNHDSGEGVTANTDVCSVPSEGL---EMPGDSEGPVYCHGFAWPEGADVNNHILPLYHYVKNIGRTEEEGGYYGNVEGAPECGCIEEMPQVSFAECSRFSIDGIGECGEGGLYSQYNGRLDAPYGEMEHNLVRSCDN 181
BLAST of mRNA_P-canaliculata_contig10149.238.1 vs. uniprot
Match: D7FT54_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT54_ECTSI) HSP 1 Score: 164 bits (416), Expect = 8.250e-46 Identity = 75/165 (45.45%), Postives = 104/165 (63.03%), Query Frame = 1 Query: 70 CYDEDEAQHITQLMEGTCDYNIFMCCWTENDG-EGMEDNTDVCRYTDSSQ--TTRDYPGDSEGEVHCHGFGWPEKSDYPAYIEPLYNYVRNFDHKDYRGYFGSIEGAPECACIEDMPVVSRADCTTFSAAGLTACTGNDLRKHYRGRMGSPGGDLDFNLVTACDN 555 C DE H+ L+ C++N +MCCWT NDG +GM NTDVCR D + + ++P DSEG V+CHGFGW + +D I PLY+ V N + GY+G++EGAP+C C+E+MPVVS ++C+ F G+T C + L +Y R+ P G L+ NLV CDN Sbjct: 95 CSTYDEDVHVAYLLPEMCEWNTYMCCWTGNDGPDGMTSNTDVCRVWDYPEEGNSLEFPRDSEGSVYCHGFGWADGADVNTNILPLYHSVINTGRTEEGGYYGNVEGAPQCGCLEEMPVVSFSECSRFDGDGITDCGEHGLYSNYVSRIDEPNGPLEDNLVRICDN 259
BLAST of mRNA_P-canaliculata_contig10149.238.1 vs. uniprot
Match: A0A6H5L9G6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9G6_9PHAE) HSP 1 Score: 156 bits (394), Expect = 3.540e-45 Identity = 73/165 (44.24%), Postives = 104/165 (63.03%), Query Frame = 1 Query: 67 TCYDEDEAQHITQLMEGTCDYNIFMCCWTEND-GEGMEDNTDVCRYTDSSQTTRDYPGDSEGEVHCHGFGWPEKSDYPAYIEPLYNYVRNFDHKDYRG-YFGSIEGAPECACIEDMPVVSRADCTTFSAAGLTACTGNDLRKHYRGRMGSPGGDLDFNLVTACDN 555 T YDED + +L++ TC+++ +MCC+T +D GEG+ NTDVC +EG V+CHGF WP+ +D +I PLY+YV+N + G Y+GS+EGAPEC CIE+MP VS A+C+ F G+ C L Y GR+G+P G+++ NLV +CDN Sbjct: 29 TTYDED--LEVAKLLDDTCEWDTYMCCFTNHDSGEGVTANTDVCSVP------------NEGSVYCHGFAWPDGADVNNHILPLYHYVKNIGRTEEEGGYYGSVEGAPECGCIEEMPQVSFAECSRFDIDGIVGCGEGGLYSQYNGRLGAPYGEMEHNLVRSCDN 179
BLAST of mRNA_P-canaliculata_contig10149.238.1 vs. uniprot
Match: A0A6H5L319_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L319_9PHAE) HSP 1 Score: 154 bits (388), Expect = 1.760e-41 Identity = 72/170 (42.35%), Postives = 103/170 (60.59%), Query Frame = 1 Query: 70 CYDEDEAQHITQLMEGTCDYNIFMCCWTENDG-EGMEDNTDVCRYTDSSQTTRDY--PGDSEGEVHCHGFGWPEKSDYPAYIEPLYNYVRNFDHKDYRGYF-----GSIEGAPECACIEDMPVVSRADCTTFSAAGLTACTGNDLRKHYRGRMGSPGGDLDFNLVTACDN 555 C +E + +L++ TC+++ +MCCWT NDG +GM N+DVCR D + + P +SEG V CHGF W E +D +I PLY+YV+N + G++ S+EG PEC CIE++P VS ++C+ +S G+ C N L YRG +G P G +D NLV CDN Sbjct: 29 CSTYEEHVEVAKLLDSTCEWDPYMCCWTGNDGADGMTANSDVCRVLDYPEEGDSFEMPRESEGFVCCHGFAWAEGADVDTHILPLYHYVKNVGRTEEAGFYEMKLPDSVEGTPECGCIEEIPSVSCSECSRYSWEGIAGCGNNGLLSQYRGCLGEPCGPMDDNLVRTCDN 198
BLAST of mRNA_P-canaliculata_contig10149.238.1 vs. uniprot
Match: D7G8D2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8D2_ECTSI) HSP 1 Score: 139 bits (349), Expect = 4.440e-38 Identity = 80/190 (42.11%), Postives = 106/190 (55.79%), Query Frame = 1 Query: 1 LLTALSTTAASSSTSSEREMDLTCYDEDEAQHITQLMEGTCDYNIFMCCWTENDGEGMEDNTDVCRYTDSSQTTRDYPGDSEGEVHCHGFGWPEKSDYPAYIEPLYNYVRNFDHKDYRGYFGSIEGAPECACIEDMPVVSRADCTTFSAAGLT-----ACTGNDLRKHYRGRMGSPGGDLDFNLVTACDN 555 LL A + +A +SS ++ E Y DE + + CDYN +MCCW +G ++DNTDVC Y ++PGDSEG VHCHGF WPE + +I+ L V +H D + Y G+I GAP C C+E+MP VSRADCT + A L AC+ NDLR+ Y+ + G D LV CDN Sbjct: 19 LLLAPTVSARTSSAFADAENSFYDYSGDEFELVKNFDFNQCDYNTWMCCWDGRNGLAVKDNTDVCSYRGE-----EFPGDSEGPVHCHGFVWPENAS-DDFIKYLALDVAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGSDFMACSKNDLRRAYK-ELYPTGRGRDL-LVKKCDN 200
BLAST of mRNA_P-canaliculata_contig10149.238.1 vs. uniprot
Match: D7G8C5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C5_ECTSI) HSP 1 Score: 140 bits (352), Expect = 8.740e-38 Identity = 80/190 (42.11%), Postives = 106/190 (55.79%), Query Frame = 1 Query: 1 LLTALSTTAASSSTSSEREMDLTCYDEDEAQHITQLMEGTCDYNIFMCCWTENDGEGMEDNTDVCRYTDSSQTTRDYPGDSEGEVHCHGFGWPEKSDYPAYIEPLYNYVRNFDHKDYRGYFGSIEGAPECACIEDMPVVSRADCTTFSAAGLT-----ACTGNDLRKHYRGRMGSPGGDLDFNLVTACDN 555 LL A + +A +SS ++ E Y DE + + CDYN +MCCW +G ++DNTDVC Y ++PGDSEG VHCHGF WPE + +I+ L V +H D + Y G+I GAP C C+E+MP VSRADCT + A L AC+ NDLR+ Y+ + G D LV CDN Sbjct: 83 LLLAPTVSARTSSAFADAENSFYDYSGDEFERVKNFDFNQCDYNTWMCCWDGRNGLAVKDNTDVCSYRGE-----EFPGDSEGPVHCHGFVWPENAS-DDFIKYLALDVAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGSDFMACSKNDLRRAYK-ELYPTGRGRDL-LVKKCDN 264
BLAST of mRNA_P-canaliculata_contig10149.238.1 vs. uniprot
Match: D8LHS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHS4_ECTSI) HSP 1 Score: 107 bits (267), Expect = 1.100e-26 Identity = 61/136 (44.85%), Postives = 79/136 (58.09%), Query Frame = 1 Query: 139 MCCWTENDGEG-MEDNTDVCRYTDSSQTTRDYPGDSEGEVHCHGFGWPEKS--DYPAYI--EPLYNYVRNFDHKDYRGYFGSIEGAPECACIEDMPVVSRADCTTFSAAGLT-----ACTGNDLRKHYRGRMGSPG 516 MCCW+ GE + DNTDV RY + ++PG+SEG+VHCHG WPE S +Y Y+ + YN+ H + +GYFG I GAP C C+E MP VSR+DC+ + A L AC NDLR +R PG Sbjct: 1 MCCWSSRVGEEPVSDNTDVYRYGST-----EFPGESEGDVHCHGLVWPEGSSDEYIIYLALDVAYNH-----HVEEKGYFGHIPGAPVCDCLERMPEVSRSDCSQYRPAHLKGSDFMACPKNDLRPIWRPIHNGPG 126 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10149.238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10149.238.1 >prot_P-canaliculata_contig10149.238.1 ID=prot_P-canaliculata_contig10149.238.1|Name=mRNA_P-canaliculata_contig10149.238.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=185bp LLTALSTTAASSSTSSEREMDLTCYDEDEAQHITQLMEGTCDYNIFMCCWback to top mRNA from alignment at P-canaliculata_contig10149:6783..8648+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10149.238.1 ID=mRNA_P-canaliculata_contig10149.238.1|Name=mRNA_P-canaliculata_contig10149.238.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1866bp|location=Sequence derived from alignment at P-canaliculata_contig10149:6783..8648+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10149:6783..8648+ >mRNA_P-canaliculata_contig10149.238.1 ID=mRNA_P-canaliculata_contig10149.238.1|Name=mRNA_P-canaliculata_contig10149.238.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1110bp|location=Sequence derived from alignment at P-canaliculata_contig10149:6783..8648+ (Pelvetia canaliculata dioecious)back to top |