Homology
BLAST of mRNA_P-canaliculata_contig101442.237.1 vs. uniprot
Match:
A0A517ZN86_9PLAN (Uncharacterized protein n=1 Tax=Symmachiella dynata TaxID=2527995 RepID=A0A517ZN86_9PLAN)
HSP 1 Score: 67.0 bits (162), Expect = 1.110e-10
Identity = 35/70 (50.00%), Postives = 50/70 (71.43%), Query Frame = 1
Query: 313 EDDSLI-QKLLGIFQTTSIIRLALIEGAVFFNFMMFMTENHPVNLGIGVFGLLLLLIAIPFPTRVWSWVE 519
E DS++ Q+L G++Q +SII A++EGA+F N + TE HPVNL IG +LLLL +IP +R+ +WVE
Sbjct: 99 ESDSVVFQQLYGVYQYSSIIAAAILEGAIFLNLFAYFTEGHPVNLVIGGAFILLLLTSIPTASRIQNWVE 168
BLAST of mRNA_P-canaliculata_contig101442.237.1 vs. uniprot
Match:
A0A2E7NJ41_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7NJ41_9PLAN)
HSP 1 Score: 50.8 bits (120), Expect = 7.810e-5
Identity = 29/64 (45.31%), Postives = 44/64 (68.75%), Query Frame = 1
Query: 334 KLLGIFQTTSIIRLALIEGAVFFNFMMFMTENHPVNLGIGVFGLLLLLIAIPFPTR--VWSWVE 519
+LLG++Q I+ LAL+EGA FFN ++F E+H +L +G G+LLLL+ +PTR + SW+
Sbjct: 83 ELLGLYQVRLIVGLALLEGAAFFNILVFSMEHHWASLMVG--GILLLLMLPRWPTRSKIESWIR 144
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101442.237.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.11e-10 / Id = 50.00 Expect = 7.81e-5 / Id = 45.31 Sequence A0A517ZN86_9PLAN A0A2E7NJ41_9PLAN back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category signal anchor Exons 1 Model size 519 Cds size 519 Stop 0 Start 1
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815588.102978-CDS-P-canaliculata_contig101442:137..656 1622815588.102978-CDS-P-canaliculata_contig101442:137..656 Pelvetia canaliculata dioecious CDS P-canaliculata_contig101442 138..656 + 1693494152.8158486-CDS-P-canaliculata_contig101442:137..656 1693494152.8158486-CDS-P-canaliculata_contig101442:137..656 Pelvetia canaliculata dioecious CDS P-canaliculata_contig101442 138..656 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig101442.237.1
>prot_P-canaliculata_contig101442.237.1 ID=prot_P-canaliculata_contig101442.237.1|Name=mRNA_P-canaliculata_contig101442.237.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=173bp
MISDSVRSAFEPQTRVMLIIGAAMFLGACFFGVFVCAMADWAELKNVQAM back to top mRNA from alignment at P-canaliculata_contig101442:138..656+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101442.237.1 ID=mRNA_P-canaliculata_contig101442.237.1|Name=mRNA_P-canaliculata_contig101442.237.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=519bp|location=Sequence derived from alignment at P-canaliculata_contig101442:138..656+ (Pelvetia canaliculata dioecious)ATGATTAGCGATTCAGTGCGCTCCGCGTTCGAGCCTCAAACCCGAGTCAT
GCTGATCATTGGCGCAGCGATGTTCTTGGGGGCCTGCTTTTTCGGAGTAT
TCGTTTGTGCGATGGCGGACTGGGCGGAGTTGAAAAACGTTCAGGCGATG
GACATTTTTCAATGGGTTGGAATTGCTTTGGGCATTGGTGCTTTTTCAGC
GTCTTTTATCGTGCCTTTTTTCGTTCGCAGTGCGGCCGTCAAAGAGTTGG
ACTCTCCATTGGCCAGTCCCTCGCAGTCCGGAATTTCCAGCCAGCGAATT
GGCTCGATGGACGAGGATGATTCTTTGATTCAAAAATTACTCGGTATTTT
TCAGACAACGTCGATTATCCGGCTCGCCTTGATCGAAGGCGCGGTCTTTT
TTAATTTCATGATGTTCATGACAGAAAACCATCCCGTCAATCTTGGCATC
GGAGTTTTCGGACTGTTGCTTTTGCTAATCGCAATACCGTTTCCAACGAG
AGTTTGGAGTTGGGTGGAG back to top Coding sequence (CDS) from alignment at P-canaliculata_contig101442:138..656+
>mRNA_P-canaliculata_contig101442.237.1 ID=mRNA_P-canaliculata_contig101442.237.1|Name=mRNA_P-canaliculata_contig101442.237.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1038bp|location=Sequence derived from alignment at P-canaliculata_contig101442:138..656+ (Pelvetia canaliculata dioecious) back to top