mRNA_P-canaliculata_contig101389.231.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_P-canaliculata_contig101389.231.1 vs. uniprot
Match: A0A6H5KCR3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR3_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.380e-21
Identity = 50/106 (47.17%), Postives = 67/106 (63.21%), Query Frame = 3

Query:  276 MYNMRPLPPGRETITIGNRRRINVECIGTIDVIFH------GKSDQRITLIDVAYVPDLGFNLYSLHAVQRTHLIVSDASGTHIIGANLTFPRSSSGSYLRATRLP 575
            MYN+ P+PPG+E I +GN   + VEC+G++++ FH      G+ D  + L DV  VP + FNLYSLH  Q+TH I+ D  G H+ G  L+F  S  G YL ATRLP
Sbjct:    1 MYNISPVPPGKEYIRVGNGAHLRVECVGSVNLAFHMAGGRSGEVDFCVQLTDVYVVPGISFNLYSLHQTQKTHRIMLDERGVHLFGGRLSFAYSDIGCYLSATRLP 106

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BLAST of mRNA_P-canaliculata_contig101389.231.1 vs. uniprot
Match: A0A6H5JKY9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKY9_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.410e-18
Identity = 48/106 (45.28%), Postives = 66/106 (62.26%), Query Frame = 3

Query:  276 MYNMRPLPPGRETITIGNRRRINVECIGTIDVIFH---GKS---DQRITLIDVAYVPDLGFNLYSLHAVQRTHLIVSDASGTHIIGANLTFPRSSSGSYLRATRLP 575
            MYN+ P+PPG+E I +GN   + VEC+G++++ FH   G+S   D  + L DV  VP + FNL+SLH  Q+ H I+ D  G H+ G  L+F  S  G  L ATRLP
Sbjct:    1 MYNISPVPPGKEYIRVGNGAHLRVECVGSVNLAFHMAGGRSREVDFCVQLTDVYVVPGISFNLFSLHQTQKKHRIMLDERGVHLFGGRLSFAYSDIGCSLSATRLP 106

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BLAST of mRNA_P-canaliculata_contig101389.231.1 vs. uniprot
Match: A0A6H5K3I1_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I1_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 3.110e-16
Identity = 44/105 (41.90%), Postives = 64/105 (60.95%), Query Frame = 3

Query:  276 MYNMRPLPPGRETITIGNRRRINVECIGTIDVIFH-----GKSDQRITLIDVAYVPDLGFNLYSLHAVQRTHLIVSDASGTHIIGANLTFPRSSSGSYLRATRLP 575
            M+++RP+P G+E I +GN   + V+C+G +++ FH     G+ D R+ + DV  VP + FNL+SLH  QR   IV D +G H+    L+F  S  G  L ATRLP
Sbjct:  657 MFDLRPVPTGKEYIQVGNGTYLRVQCVGKVNMAFHMQDQGGERDFRVQMSDVYVVPGITFNLFSLHHTQRKQRIVLDETGVHLFDGRLSFAYSDVGCSLWATRLP 761

[Close]

BLAST of mRNA_P-canaliculata_contig101389.231.1 vs. uniprot
Match: A0A6H5JW31_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW31_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 6.260e-16
Identity = 50/135 (37.04%), Postives = 72/135 (53.33%), Query Frame = 3

Query:  276 MYNMRPLPPGRETITIGNRRRINVECIGTIDVIFH-----GKSDQRITLIDVAYVPDLGFNLYSLHAVQRTHLIVSDASGTHIIGANLTFPRSSSGSYLRATRLPACTKGARRRQGEMRATNVLRELRHPISPPP 665
            M++M+P+P GRE I +GN   + V+C+G+ ++ FH     G++D  + + DV  VP + FNL+SLH  QR   I  D +G H+    L+F  S  G  L ATRLP    G+    G      V      P +PPP
Sbjct:    1 MFDMKPIPAGREFIQVGNSAYLRVQCVGSNNMTFHMPDPSGEADFCVQISDVYVVPGITFNLFSLHHTQRRQRITLDDNGVHLFNGQLSFAYSDVGCSLWATRLPPTCTGSVVTLGPDALPRV-----SPQAPPP 130

[Close]

BLAST of mRNA_P-canaliculata_contig101389.231.1 vs. uniprot
Match: A0A6H5JX85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX85_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 2.660e-15
Identity = 43/105 (40.95%), Postives = 63/105 (60.00%), Query Frame = 3

Query:  276 MYNMRPLPPGRETITIGNRRRINVECIGTIDVIFH-----GKSDQRITLIDVAYVPDLGFNLYSLHAVQRTHLIVSDASGTHIIGANLTFPRSSSGSYLRATRLP 575
            M+++RP+P G+E I +GN   + V+C+GT+++ FH     G+ D  + + DV  VP + FNL+SLH  QR   IV D +G H+    + F  S  G  L ATRLP
Sbjct:    1 MFDLRPVPTGKEYIQVGNGACLRVQCLGTVNMAFHMQDQGGERDVCVQMSDVYVVPGITFNLFSLHHTQRKQRIVLDETGVHLFDGKIFFAYSDVGCSLWATRLP 105

[Close]

BLAST of mRNA_P-canaliculata_contig101389.231.1 vs. uniprot
Match: A0A6H5JCK7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK7_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 3.300e-15
Identity = 43/105 (40.95%), Postives = 64/105 (60.95%), Query Frame = 3

Query:  276 MYNMRPLPPGRETITIGNRRRINVECIGTIDVIFH-----GKSDQRITLIDVAYVPDLGFNLYSLHAVQRTHLIVSDASGTHIIGANLTFPRSSSGSYLRATRLP 575
            M+++RP+P G+E I +GN   + V+C+GT+++ FH     G+ D  + + DV  VP + FNL+SLH +QR   IV D +G H+     +F  S  G  L ATRLP
Sbjct:  355 MFDLRPVPTGKEYIQVGNGAYLRVQCLGTVNMAFHMQDQGGERDFCVQMSDVYVVPGITFNLFSLHHMQRKQRIVLDETGVHLFDGKRSFAYSDVGCSLWATRLP 459

[Close]

BLAST of mRNA_P-canaliculata_contig101389.231.1 vs. uniprot
Match: A0A6H5JU31_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU31_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 4.340e-15
Identity = 43/105 (40.95%), Postives = 63/105 (60.00%), Query Frame = 3

Query:  276 MYNMRPLPPGRETITIGNRRRINVECIGTIDVIFH-----GKSDQRITLIDVAYVPDLGFNLYSLHAVQRTHLIVSDASGTHIIGANLTFPRSSSGSYLRATRLP 575
            M+++RP+P G+E I +GN   + V+C+G +++ FH     G+ D  + + DV  VP + FNL+SLH  QR   IV D +G H+    L+F  S  G  L ATRLP
Sbjct:    1 MFDLRPVPTGKEYIQVGNGAYLRVQCVGKVNMAFHMQDQGGELDFCVQMSDVYVVPGITFNLFSLHHTQRKQRIVLDETGVHLFDGRLSFAYSDVGCSLWATRLP 105

[Close]

BLAST of mRNA_P-canaliculata_contig101389.231.1 vs. uniprot
Match: A0A6H5JA11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA11_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.570e-14
Identity = 41/104 (39.42%), Postives = 60/104 (57.69%), Query Frame = 3

Query:  276 MYNMRPLPPGRETITIGNRRRINVECIGTIDVIFH-----GKSDQRITLIDVAYVPDLGFNLYSLHAVQRTHLIVSDASGTHIIGANLTFPRSSSGSYLRATRL 572
            M+++RP+P G+E I +GN   + V+C+G +++ FH     G+ D  +   DV  VP + FN +SLH  QR   IV D +G H+    L+F  S  G  L ATRL
Sbjct:    1 MFDLRPVPTGKEYIQVGNGAYLRVQCVGKVNMAFHMQDQRGERDFCVQTSDVYVVPGITFNFFSLHHTQRRQRIVLDETGVHLFVGRLSFAYSDVGCSLWATRL 104

[Close]

BLAST of mRNA_P-canaliculata_contig101389.231.1 vs. uniprot
Match: A0A6H5LNB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNB5_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 3.780e-9
Identity = 29/77 (37.66%), Postives = 47/77 (61.04%), Query Frame = 3

Query:  276 MYNMRPLPPGRETITIGNRRRINVECIGTIDVIFH-----GKSDQRITLIDVAYVPDLGFNLYSLHAVQRTHLIVSD 491
            M++M+P+P G++ I +GN   + V+C+  I++ FH     G++D  + + DV  VP + FNL+SLH  QR   I  D
Sbjct:    1 MFDMKPIPAGKQFIQVGNGAHLRVQCVEGINMAFHMPGPSGETDFCVQMSDVYVVPGITFNLFSLHHTQRRQRITLD 77

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig101389.231.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig101389.231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
A0A6H5KCR3_9PHAE	1.380e-21	47.17	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JKY9_9PHAE	1.410e-18	45.28	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5K3I1_9PHAE	3.110e-16	41.90	Integrase catalytic domain-containing protein n=5 ...	[more]
A0A6H5JW31_9PHAE	6.260e-16	37.04	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5JX85_9PHAE	2.660e-15	40.95	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JCK7_9PHAE	3.300e-15	40.95	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JU31_9PHAE	4.340e-15	40.95	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JA11_9PHAE	1.570e-14	39.42	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5LNB5_9PHAE	3.780e-9	37.66	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig101389.231.1	prot_P-canaliculata_contig101389.231.1	Pelvetia canaliculata dioecious	polypeptide	P-canaliculata_contig101389 347..739 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815587.5412867-UTR-P-canaliculata_contig101389:71..346	1622815587.5412867-UTR-P-canaliculata_contig101389:71..346	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig101389 72..346 +
1693494152.5190034-UTR-P-canaliculata_contig101389:71..346	1693494152.5190034-UTR-P-canaliculata_contig101389:71..346	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig101389 72..346 +
1622815587.5714376-UTR-P-canaliculata_contig101389:739..1013	1622815587.5714376-UTR-P-canaliculata_contig101389:739..1013	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig101389 740..1013 +
1693494152.5379865-UTR-P-canaliculata_contig101389:739..1013	1693494152.5379865-UTR-P-canaliculata_contig101389:739..1013	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig101389 740..1013 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815587.5558228-CDS-P-canaliculata_contig101389:346..739	1622815587.5558228-CDS-P-canaliculata_contig101389:346..739	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig101389 347..739 +
1693494152.528481-CDS-P-canaliculata_contig101389:346..739	1693494152.528481-CDS-P-canaliculata_contig101389:346..739	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig101389 347..739 +