mRNA_P-canaliculata_contig101389.231.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig101389.231.1 vs. uniprot
Match: A0A6H5KCR3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR3_9PHAE) HSP 1 Score: 105 bits (263), Expect = 1.380e-21 Identity = 50/106 (47.17%), Postives = 67/106 (63.21%), Query Frame = 3 Query: 276 MYNMRPLPPGRETITIGNRRRINVECIGTIDVIFH------GKSDQRITLIDVAYVPDLGFNLYSLHAVQRTHLIVSDASGTHIIGANLTFPRSSSGSYLRATRLP 575
MYN+ P+PPG+E I +GN + VEC+G++++ FH G+ D + L DV VP + FNLYSLH Q+TH I+ D G H+ G L+F S G YL ATRLP
Sbjct: 1 MYNISPVPPGKEYIRVGNGAHLRVECVGSVNLAFHMAGGRSGEVDFCVQLTDVYVVPGISFNLYSLHQTQKTHRIMLDERGVHLFGGRLSFAYSDIGCYLSATRLP 106
BLAST of mRNA_P-canaliculata_contig101389.231.1 vs. uniprot
Match: A0A6H5JKY9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKY9_9PHAE) HSP 1 Score: 97.1 bits (240), Expect = 1.410e-18 Identity = 48/106 (45.28%), Postives = 66/106 (62.26%), Query Frame = 3 Query: 276 MYNMRPLPPGRETITIGNRRRINVECIGTIDVIFH---GKS---DQRITLIDVAYVPDLGFNLYSLHAVQRTHLIVSDASGTHIIGANLTFPRSSSGSYLRATRLP 575
MYN+ P+PPG+E I +GN + VEC+G++++ FH G+S D + L DV VP + FNL+SLH Q+ H I+ D G H+ G L+F S G L ATRLP
Sbjct: 1 MYNISPVPPGKEYIRVGNGAHLRVECVGSVNLAFHMAGGRSREVDFCVQLTDVYVVPGISFNLFSLHQTQKKHRIMLDERGVHLFGGRLSFAYSDIGCSLSATRLP 106
BLAST of mRNA_P-canaliculata_contig101389.231.1 vs. uniprot
Match: A0A6H5K3I1_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I1_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 3.110e-16 Identity = 44/105 (41.90%), Postives = 64/105 (60.95%), Query Frame = 3 Query: 276 MYNMRPLPPGRETITIGNRRRINVECIGTIDVIFH-----GKSDQRITLIDVAYVPDLGFNLYSLHAVQRTHLIVSDASGTHIIGANLTFPRSSSGSYLRATRLP 575
M+++RP+P G+E I +GN + V+C+G +++ FH G+ D R+ + DV VP + FNL+SLH QR IV D +G H+ L+F S G L ATRLP
Sbjct: 657 MFDLRPVPTGKEYIQVGNGTYLRVQCVGKVNMAFHMQDQGGERDFRVQMSDVYVVPGITFNLFSLHHTQRKQRIVLDETGVHLFDGRLSFAYSDVGCSLWATRLP 761
BLAST of mRNA_P-canaliculata_contig101389.231.1 vs. uniprot
Match: A0A6H5JW31_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW31_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 6.260e-16 Identity = 50/135 (37.04%), Postives = 72/135 (53.33%), Query Frame = 3 Query: 276 MYNMRPLPPGRETITIGNRRRINVECIGTIDVIFH-----GKSDQRITLIDVAYVPDLGFNLYSLHAVQRTHLIVSDASGTHIIGANLTFPRSSSGSYLRATRLPACTKGARRRQGEMRATNVLRELRHPISPPP 665
M++M+P+P GRE I +GN + V+C+G+ ++ FH G++D + + DV VP + FNL+SLH QR I D +G H+ L+F S G L ATRLP G+ G V P +PPP
Sbjct: 1 MFDMKPIPAGREFIQVGNSAYLRVQCVGSNNMTFHMPDPSGEADFCVQISDVYVVPGITFNLFSLHHTQRRQRITLDDNGVHLFNGQLSFAYSDVGCSLWATRLPPTCTGSVVTLGPDALPRV-----SPQAPPP 130
BLAST of mRNA_P-canaliculata_contig101389.231.1 vs. uniprot
Match: A0A6H5JX85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX85_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 2.660e-15 Identity = 43/105 (40.95%), Postives = 63/105 (60.00%), Query Frame = 3 Query: 276 MYNMRPLPPGRETITIGNRRRINVECIGTIDVIFH-----GKSDQRITLIDVAYVPDLGFNLYSLHAVQRTHLIVSDASGTHIIGANLTFPRSSSGSYLRATRLP 575
M+++RP+P G+E I +GN + V+C+GT+++ FH G+ D + + DV VP + FNL+SLH QR IV D +G H+ + F S G L ATRLP
Sbjct: 1 MFDLRPVPTGKEYIQVGNGACLRVQCLGTVNMAFHMQDQGGERDVCVQMSDVYVVPGITFNLFSLHHTQRKQRIVLDETGVHLFDGKIFFAYSDVGCSLWATRLP 105
BLAST of mRNA_P-canaliculata_contig101389.231.1 vs. uniprot
Match: A0A6H5JCK7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK7_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 3.300e-15 Identity = 43/105 (40.95%), Postives = 64/105 (60.95%), Query Frame = 3 Query: 276 MYNMRPLPPGRETITIGNRRRINVECIGTIDVIFH-----GKSDQRITLIDVAYVPDLGFNLYSLHAVQRTHLIVSDASGTHIIGANLTFPRSSSGSYLRATRLP 575
M+++RP+P G+E I +GN + V+C+GT+++ FH G+ D + + DV VP + FNL+SLH +QR IV D +G H+ +F S G L ATRLP
Sbjct: 355 MFDLRPVPTGKEYIQVGNGAYLRVQCLGTVNMAFHMQDQGGERDFCVQMSDVYVVPGITFNLFSLHHMQRKQRIVLDETGVHLFDGKRSFAYSDVGCSLWATRLP 459
BLAST of mRNA_P-canaliculata_contig101389.231.1 vs. uniprot
Match: A0A6H5JU31_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU31_9PHAE) HSP 1 Score: 86.7 bits (213), Expect = 4.340e-15 Identity = 43/105 (40.95%), Postives = 63/105 (60.00%), Query Frame = 3 Query: 276 MYNMRPLPPGRETITIGNRRRINVECIGTIDVIFH-----GKSDQRITLIDVAYVPDLGFNLYSLHAVQRTHLIVSDASGTHIIGANLTFPRSSSGSYLRATRLP 575
M+++RP+P G+E I +GN + V+C+G +++ FH G+ D + + DV VP + FNL+SLH QR IV D +G H+ L+F S G L ATRLP
Sbjct: 1 MFDLRPVPTGKEYIQVGNGAYLRVQCVGKVNMAFHMQDQGGELDFCVQMSDVYVVPGITFNLFSLHHTQRKQRIVLDETGVHLFDGRLSFAYSDVGCSLWATRLP 105
BLAST of mRNA_P-canaliculata_contig101389.231.1 vs. uniprot
Match: A0A6H5JA11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA11_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 1.570e-14 Identity = 41/104 (39.42%), Postives = 60/104 (57.69%), Query Frame = 3 Query: 276 MYNMRPLPPGRETITIGNRRRINVECIGTIDVIFH-----GKSDQRITLIDVAYVPDLGFNLYSLHAVQRTHLIVSDASGTHIIGANLTFPRSSSGSYLRATRL 572
M+++RP+P G+E I +GN + V+C+G +++ FH G+ D + DV VP + FN +SLH QR IV D +G H+ L+F S G L ATRL
Sbjct: 1 MFDLRPVPTGKEYIQVGNGAYLRVQCVGKVNMAFHMQDQRGERDFCVQTSDVYVVPGITFNFFSLHHTQRRQRIVLDETGVHLFVGRLSFAYSDVGCSLWATRL 104
BLAST of mRNA_P-canaliculata_contig101389.231.1 vs. uniprot
Match: A0A6H5LNB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNB5_9PHAE) HSP 1 Score: 63.2 bits (152), Expect = 3.780e-9 Identity = 29/77 (37.66%), Postives = 47/77 (61.04%), Query Frame = 3 Query: 276 MYNMRPLPPGRETITIGNRRRINVECIGTIDVIFH-----GKSDQRITLIDVAYVPDLGFNLYSLHAVQRTHLIVSD 491
M++M+P+P G++ I +GN + V+C+ I++ FH G++D + + DV VP + FNL+SLH QR I D
Sbjct: 1 MFDMKPIPAGKQFIQVGNGAHLRVQCVEGINMAFHMPGPSGETDFCVQMSDVYVVPGITFNLFSLHHTQRRQRITLD 77 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101389.231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig101389.231.1 >prot_P-canaliculata_contig101389.231.1 ID=prot_P-canaliculata_contig101389.231.1|Name=mRNA_P-canaliculata_contig101389.231.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=131bp MYNMRPLPPGRETITIGNRRRINVECIGTIDVIFHGKSDQRITLIDVAYVback to top mRNA from alignment at P-canaliculata_contig101389:72..1013+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig101389.231.1 ID=mRNA_P-canaliculata_contig101389.231.1|Name=mRNA_P-canaliculata_contig101389.231.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=942bp|location=Sequence derived from alignment at P-canaliculata_contig101389:72..1013+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig101389:72..1013+ >mRNA_P-canaliculata_contig101389.231.1 ID=mRNA_P-canaliculata_contig101389.231.1|Name=mRNA_P-canaliculata_contig101389.231.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=786bp|location=Sequence derived from alignment at P-canaliculata_contig101389:72..1013+ (Pelvetia canaliculata dioecious)back to top |