Homology
BLAST of mRNA_P-canaliculata_contig101366.227.1 vs. uniprot
Match: A0A4V1SB54_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A4V1SB54_9BACT) HSP 1 Score: 48.1 bits (113), Expect = 2.930e-5 Identity = 30/62 (48.39%), Postives = 41/62 (66.13%), Query Frame = 1 Query: 37 ERKVRENPTKSVLYAAAAGYGLLLLPAGSLLRLPLRLGAVLAKPALLGLGAAKLYEIVQKKT 222
E +VR++P +SVL A G L +P S+L ++L + LA PALL GAAKL EI+QKK+
Sbjct: 34 EDRVRKHPVESVLGAVVVGCLLHRMPVRSILVAKVKLVSALAPPALLAYGAAKLCEILQKKS 95
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 231 |
| Cds size | 231 |
| Stop | 1 |
| Start | 1 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815587.2744112-CDS-P-canaliculata_contig101366:685..916 | 1622815587.2744112-CDS-P-canaliculata_contig101366:685..916 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig101366 686..916 + |
| 1693494152.3943543-CDS-P-canaliculata_contig101366:685..916 | 1693494152.3943543-CDS-P-canaliculata_contig101366:685..916 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig101366 686..916 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig101366.227.1 >prot_P-canaliculata_contig101366.227.1 ID=prot_P-canaliculata_contig101366.227.1|Name=mRNA_P-canaliculata_contig101366.227.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=77bp
METTSTTKLEQLERKVRENPTKSVLYAAAAGYGLLLLPAGSLLRLPLRLG
AVLAKPALLGLGAAKLYEIVQKKTVS* back to topmRNA from alignment at P-canaliculata_contig101366:686..916+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-canaliculata_contig101366.227.1 ID=mRNA_P-canaliculata_contig101366.227.1|Name=mRNA_P-canaliculata_contig101366.227.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=231bp|location=Sequence derived from alignment at P-canaliculata_contig101366:686..916+ (Pelvetia canaliculata dioecious)
ATGGAAACCACATCAACAACCAAACTCGAACAACTCGAACGGAAAGTCCG
TGAAAACCCGACCAAATCCGTTCTCTACGCCGCGGCCGCCGGTTACGGTC
TTTTGCTCCTACCCGCAGGTTCCCTCCTACGCCTTCCCCTGCGCCTGGGC
GCCGTTCTAGCGAAGCCGGCTCTGCTCGGTCTCGGAGCTGCGAAACTTTA
CGAAATCGTCCAGAAGAAAACGGTAAGCTGA back to topCoding sequence (CDS) from alignment at P-canaliculata_contig101366:686..916+ >mRNA_P-canaliculata_contig101366.227.1 ID=mRNA_P-canaliculata_contig101366.227.1|Name=mRNA_P-canaliculata_contig101366.227.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at P-canaliculata_contig101366:686..916+ (Pelvetia canaliculata dioecious)
ATGGAAACCACATCAACAACCAAACTCGAACAACTCGAACGGAAAGTCCG
TGAAAACCCGACCAAATCCGTTCTCTACGCCGCGGCCGCCGGTTACGGTC
TTTTGCTCCTACCCGCAGGTTCCCTCCTACGCCTTCCCCTGCGCCTGGGC
GCCGTTCTAGCGAAGCCGGCTCTGCTCGGTCTCGGAGCTGCGAAACTTTA
CGAAATCGTCCAGAAGAAAACGGTAAGCTGAATGGAAACCACATCAACAA
CCAAACTCGAACAACTCGAACGGAAAGTCCGTGAAAACCCGACCAAATCC
GTTCTCTACGCCGCGGCCGCCGGTTACGGTCTTTTGCTCCTACCCGCAGG
TTCCCTCCTACGCCTTCCCCTGCGCCTGGGCGCCGTTCTAGCGAAGCCGG
CTCTGCTCGGTCTCGGAGCTGCGAAACTTTACGAAATCGTCCAGAAGAAA
ACGGTAAGCTGA back to top
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