mRNA_P-canaliculata_contig101288.217.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-canaliculata_contig101288.217.1
Unique Name	mRNA_P-canaliculata_contig101288.217.1
Type	mRNA
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))

Homology

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BLAST of mRNA_P-canaliculata_contig101288.217.1 vs. uniprot
Match: A0A1G8TUV8_9GAMM (Uncharacterized protein n=2 Tax=Ferrimonas TaxID=44011 RepID=A0A1G8TUV8_9GAMM)

HSP 1 Score: 59.7 bits (143), Expect = 2.890e-7
Identity = 34/122 (27.87%), Postives = 61/122 (50.00%), Query Frame = 1

Query:  166 HFDHPKKPAIIDALLDCFGSAGGLPFKATGSALIVNNNDSNFAHIKKLVTGTSHADHPVIYVTKNFLAGKTLEPDDLAQRLYGIAYVWVERDKHIGKKLRNWLARQKIQQELWPGSACLYWP 531
            H    KKP I+  +L+ FG         T     + +N+++FA I +++ G S    PV+Y + +     +++PDDLA+ L G+A+V VE  +     L+     + +    + G+  +YWP
Sbjct:  114 HSPQAKKPYIVRLILEHFGGGQDANLTITDEPTRLQDNEADFAAISRIINGESDNMLPVVYCSADEYNRCSVDPDDLAKWLSGMAHVLVEPHRRFSFDLKEATEGKNV----YLGAVGIYWP 231

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig101288.217.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig101288.217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1

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POSITION

0


Match Name	E-value	Identity	Description
A0A1G8TUV8_9GAMM	2.890e-7	27.87	Uncharacterized protein n=2 Tax=Ferrimonas TaxID=4...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig101288	contig	P-canaliculata_contig101288:456..989 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	534
Cds size	534
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815586.5411005-CDS-P-canaliculata_contig101288:455..989	1622815586.5411005-CDS-P-canaliculata_contig101288:455..989	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig101288 456..989 +
1693494152.0419729-CDS-P-canaliculata_contig101288:455..989	1693494152.0419729-CDS-P-canaliculata_contig101288:455..989	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig101288 456..989 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig101288.217.1	prot_P-canaliculata_contig101288.217.1	Pelvetia canaliculata dioecious	polypeptide	P-canaliculata_contig101288 456..989 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-canaliculata_contig101288:456..989+
coding sequence from alignment at P-canaliculata_contig101288:456..989+

protein sequence of mRNA_P-canaliculata_contig101288.217.1

>prot_P-canaliculata_contig101288.217.1 ID=prot_P-canaliculata_contig101288.217.1|Name=mRNA_P-canaliculata_contig101288.217.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=178bp
VTTSIVHHADGRLNVFFCYELCEEHGQDWRNSVTIIRSNERADVRVEAQS
LGDSNHFDHPKKPAIIDALLDCFGSAGGLPFKATGSALIVNNNDSNFAHI
KKLVTGTSHADHPVIYVTKNFLAGKTLEPDDLAQRLYGIAYVWVERDKHI
GKKLRNWLARQKIQQELWPGSACLYWPE

mRNA from alignment at P-canaliculata_contig101288:456..989+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-canaliculata_contig101288.217.1 ID=mRNA_P-canaliculata_contig101288.217.1|Name=mRNA_P-canaliculata_contig101288.217.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=534bp|location=Sequence derived from alignment at P-canaliculata_contig101288:456..989+ (Pelvetia canaliculata dioecious)
GTAACGACATCTATTGTTCATCATGCCGACGGGCGTCTAAATGTGTTCTT
TTGTTATGAATTATGCGAAGAACATGGCCAAGACTGGCGAAATAGTGTGA
CAATAATACGTTCAAATGAGCGAGCTGATGTACGTGTGGAGGCACAGTCT
TTGGGTGATAGTAACCATTTCGATCACCCAAAAAAACCTGCGATAATTGA
TGCACTGCTGGATTGTTTCGGTAGCGCTGGAGGGCTGCCGTTCAAAGCGA
CTGGTTCAGCGCTCATCGTCAATAATAACGACAGCAATTTTGCACATATA
AAAAAATTGGTTACTGGTACGTCTCACGCAGATCACCCTGTAATCTATGT
CACTAAAAATTTCCTGGCCGGCAAAACACTAGAACCTGATGATCTAGCAC
AGCGTTTATATGGGATAGCGTACGTATGGGTTGAACGTGACAAACATATT
GGTAAAAAATTACGGAATTGGTTAGCAAGACAGAAAATTCAACAAGAACT
ATGGCCGGGGTCCGCGTGCTTATATTGGCCTGAA

Coding sequence (CDS) from alignment at P-canaliculata_contig101288:456..989+

>mRNA_P-canaliculata_contig101288.217.1 ID=mRNA_P-canaliculata_contig101288.217.1|Name=mRNA_P-canaliculata_contig101288.217.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1068bp|location=Sequence derived from alignment at P-canaliculata_contig101288:456..989+ (Pelvetia canaliculata dioecious)
GTAACGACATCTATTGTTCATCATGCCGACGGGCGTCTAAATGTGTTCTT
TTGTTATGAATTATGCGAAGAACATGGCCAAGACTGGCGAAATAGTGTGA
CAATAATACGTTCAAATGAGCGAGCTGATGTACGTGTGGAGGCACAGTCT
TTGGGTGATAGTAACCATTTCGATCACCCAAAAAAACCTGCGATAATTGA
TGCACTGCTGGATTGTTTCGGTAGCGCTGGAGGGCTGCCGTTCAAAGCGA
CTGGTTCAGCGCTCATCGTCAATAATAACGACAGCAATTTTGCACATATA
AAAAAATTGGTTACTGGTACGTCTCACGCAGATCACCCTGTAATCTATGT
CACTAAAAATTTCCTGGCCGGCAAAACACTAGAACCTGATGATCTAGCAC
AGCGTTTATATGGGATAGCGTACGTATGGGTTGAACGTGACAAACATATT
GGTAAAAAATTACGGAATTGGTTAGCAAGACAGAAAATTCAACAAGAACT
ATGGCCGGGGTCCGCGTGCTTATATTGGCCTGAAGTAACGACATCTATTG
TTCATCATGCCGACGGGCGTCTAAATGTGTTCTTTTGTTATGAATTATGC
GAAGAACATGGCCAAGACTGGCGAAATAGTGTGACAATAATACGTTCAAA
TGAGCGAGCTGATGTACGTGTGGAGGCACAGTCTTTGGGTGATAGTAACC
ATTTCGATCACCCAAAAAAACCTGCGATAATTGATGCACTGCTGGATTGT
TTCGGTAGCGCTGGAGGGCTGCCGTTCAAAGCGACTGGTTCAGCGCTCAT
CGTCAATAATAACGACAGCAATTTTGCACATATAAAAAAATTGGTTACTG
GTACGTCTCACGCAGATCACCCTGTAATCTATGTCACTAAAAATTTCCTG
GCCGGCAAAACACTAGAACCTGATGATCTAGCACAGCGTTTATATGGGAT
AGCGTACGTATGGGTTGAACGTGACAAACATATTGGTAAAAAATTACGGA
ATTGGTTAGCAAGACAGAAAATTCAACAAGAACTATGGCCGGGGTCCGCG
TGCTTATATTGGCCTGAA