Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 1149 |
| Cds size | 414 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815586.4600005-UTR-P-canaliculata_contig10127:772..933 | 1622815586.4600005-UTR-P-canaliculata_contig10127:772..933 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig10127 773..933 + |
| 1693494151.993697-UTR-P-canaliculata_contig10127:772..933 | 1693494151.993697-UTR-P-canaliculata_contig10127:772..933 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig10127 773..933 + |
| 1622815586.471439-UTR-P-canaliculata_contig10127:1175..1541 | 1622815586.471439-UTR-P-canaliculata_contig10127:1175..1541 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig10127 1176..1541 + |
| 1693494152.001817-UTR-P-canaliculata_contig10127:1175..1541 | 1693494152.001817-UTR-P-canaliculata_contig10127:1175..1541 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig10127 1176..1541 + |
| 1622815586.50144-UTR-P-canaliculata_contig10127:1955..2163 | 1622815586.50144-UTR-P-canaliculata_contig10127:1955..2163 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig10127 1956..2163 + |
| 1693494152.03157-UTR-P-canaliculata_contig10127:1955..2163 | 1693494152.03157-UTR-P-canaliculata_contig10127:1955..2163 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig10127 1956..2163 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815586.4838583-CDS-P-canaliculata_contig10127:1541..1955 | 1622815586.4838583-CDS-P-canaliculata_contig10127:1541..1955 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10127 1542..1955 + |
| 1693494152.0175815-CDS-P-canaliculata_contig10127:1541..1955 | 1693494152.0175815-CDS-P-canaliculata_contig10127:1541..1955 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10127 1542..1955 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10127.215.1 >prot_P-canaliculata_contig10127.215.1 ID=prot_P-canaliculata_contig10127.215.1|Name=mRNA_P-canaliculata_contig10127.215.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=138bp
MDQSLFGKATFSDWTYSGAFADTRERGGFGNSELLGDSSEDASSAGVDEW
TGIELSPSAARLGEMQGVLIPAAKVDTDAERNKFREMWHSRLVPGGRSFL
DFPAFTLELNTDVQQMEEGKMPFEPIYRKTQSHLESY* back to topmRNA from alignment at P-canaliculata_contig10127:773..2163+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-canaliculata_contig10127.215.1 ID=mRNA_P-canaliculata_contig10127.215.1|Name=mRNA_P-canaliculata_contig10127.215.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1391bp|location=Sequence derived from alignment at P-canaliculata_contig10127:773..2163+ (Pelvetia canaliculata dioecious)
TTTTCGGGCCGTCATCCGCCTTGCCCTGTTAAAAGCAGTCGGGTGTCAAG
CGTAAGGAATGATGCTCGCGGCGCGCTATCCTTGGAGACGGACCATGCGA
CCTCACCTGCTTCGTGTACAAATATGCCGCGTGTGCAAAGGGCAATGCGG
GCAAGCCGTAGGTATGACAGTTTTTTAAAGTTCGTATATTCGGTTGCCTG
ATTTTATACATGCACGAGTGCTGCGCGCAGTAGTCGATAGTTTTGCATCG
ACGCAGCATCCAGCCTCCCGTCGGCACTCAAGGTTGAGATAATTCAGAAA
ACTGGCGATACGCACCTTTGGATCTAACGTGTCTTACTCTGCTTCGATCT
GCGCGATGTCGCTGTTGCTCGTCCTCTCTCCCCCCTCTCGTCGCCGTTAC
AAGGACGCGCGTGTGTCGGAGACATTCAGAGGTTGTGATGCAGTAGTGCT
GGCGCAACTTCGCTATTATTACAATGTCCTTCCCGTTCCTGCCGAACAAG
CGGTCTTCGTGGGTCCATCGGTGGTTTCTGCGATCAGCCCATCATCGAAG
CTATCCAAGCGCGCTGGACCTGTGTTTGGACCCAGCTCAGAGTATGTCGA
GGTGTCAGTGTAAAACTACTGTTTGCCCTGCGCGTGACTTTTTTTTCCCC
CTCACTTGGTGAACGACACAACCCTCGACCATCCACCTGTTATGTTTTTT
CCCGCCCGGTGATTAGTCAAGAATGTTACCTCACTATTTTTGTTTCGAAC
TCCCACCCTTTTGTAGGAAATGGACCAGAGCCTGTTCGGCAAGGCTACGT
TCTCCGACTGGACATATAGTGGCGCATTCGCTGACACCAGGGAGAGGGGT
GGTTTCGGGAATAGTGAGCTGCTGGGAGACTCGAGCGAGGACGCTTCTAG
CGCCGGAGTGGACGAGTGGACTGGGATTGAGCTCTCCCCATCGGCGGCAC
GCCTCGGGGAGATGCAAGGAGTTCTAATCCCGGCCGCGAAAGTGGACACC
GACGCCGAGCGCAATAAGTTTCGTGAAATGTGGCATTCGCGTCTCGTGCC
GGGTGGGCGCAGTTTCCTGGACTTCCCTGCCTTCACCCTTGAGTTGAACA
CCGATGTGCAGCAGATGGAAGAGGGCAAGATGCCTTTCGAACCTATCTAC
AGAAAGACTCAGTCGCATCTCGAGTCGTACTGAAAAACGTGAGTGATCTG
AGTACTTTTATTTGTTGTGCCGCGTTCTGCCGGTCAACATTTGGTTGTCC
ATGTTTCTGTCGCGCGTCCGAACGAGGTACATATGTTGTCAGCGAACACG
TGATTCACCTGCACTCCCTTTCGGCGGCGCTGATAATTTTTTGCAAGGCA
CAACGAGAGCCGGAACGAGAGGGGGACGCTGAGCGGAGTGC back to topCoding sequence (CDS) from alignment at P-canaliculata_contig10127:773..2163+ >mRNA_P-canaliculata_contig10127.215.1 ID=mRNA_P-canaliculata_contig10127.215.1|Name=mRNA_P-canaliculata_contig10127.215.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=828bp|location=Sequence derived from alignment at P-canaliculata_contig10127:773..2163+ (Pelvetia canaliculata dioecious)
ATGGACCAGAGCCTGTTCGGCAAGGCTACGTTCTCCGACTGGACATATAG
TGGCGCATTCGCTGACACCAGGGAGAGGGGTGGTTTCGGGAATAGTGAGC
TGCTGGGAGACTCGAGCGAGGACGCTTCTAGCGCCGGAGTGGACGAGTGG
ACTGGGATTGAGCTCTCCCCATCGGCGGCACGCCTCGGGGAGATGCAAGG
AGTTCTAATCCCGGCCGCGAAAGTGGACACCGACGCCGAGCGCAATAAGT
TTCGTGAAATGTGGCATTCGCGTCTCGTGCCGGGTGGGCGCAGTTTCCTG
GACTTCCCTGCCTTCACCCTTGAGTTGAACACCGATGTGCAGCAGATGGA
AGAGGGCAAGATGCCTTTCGAACCTATCTACAGAAAGACTCAGTCGCATC
TCGAGTCGTACTGAATGGACCAGAGCCTGTTCGGCAAGGCTACGTTCTCC
GACTGGACATATAGTGGCGCATTCGCTGACACCAGGGAGAGGGGTGGTTT
CGGGAATAGTGAGCTGCTGGGAGACTCGAGCGAGGACGCTTCTAGCGCCG
GAGTGGACGAGTGGACTGGGATTGAGCTCTCCCCATCGGCGGCACGCCTC
GGGGAGATGCAAGGAGTTCTAATCCCGGCCGCGAAAGTGGACACCGACGC
CGAGCGCAATAAGTTTCGTGAAATGTGGCATTCGCGTCTCGTGCCGGGTG
GGCGCAGTTTCCTGGACTTCCCTGCCTTCACCCTTGAGTTGAACACCGAT
GTGCAGCAGATGGAAGAGGGCAAGATGCCTTTCGAACCTATCTACAGAAA
GACTCAGTCGCATCTCGAGTCGTACTGA back to top
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