mRNA_P-canaliculata_contig10121.210.1 (mRNA) Pelvetia canaliculata dioecious
|
Overview
Homology
BLAST of mRNA_P-canaliculata_contig10121.210.1 vs. uniprot
Match: D8LSI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI2_ECTSI) HSP 1 Score: 278 bits (712), Expect = 1.490e-75 Identity = 150/296 (50.68%), Postives = 192/296 (64.86%), Query Frame = 2
Query: 866 QTLIDTAGTHVFHLDLHLRRRSPSNSSPNNASSVRWFEGFGETMQAGSAAAAVATLSHPIRRMLSFLLKEEVGLEEALFWTEGQGD---------QGYQLLDNYLVRVLAGQSTWELPPGAVGEAEFHKAKIALGKFEVLLRADCLAVDLPLLGPYIGRVFSAH---NALEITSAGIDAEISPVLTPGPIAESLIRRNRWDLQLWDYGESLIMSRSTTLDSYLCSKQTWATKERQPGTGRRAAVFNSPDFHATSLAMFSCVLVSWGFHVTAIVKKPQVGFEELLPCPQKIISL-EH 1714
+TLID ++++HLDL +++ P ++S A WF+GFG G A T+ HPI+R+L L E VGLEE + W E G QGYQ LDNYLVRVLAG+S W+LPPG VG++E A+IALGKFEVLLRADCLAVDLPLL PY+ + A +A T +++ + L G L+R NRWDLQLWD+ L+ SRSTT + YLC A ++R PG GRRA V+NSP FH T +AMFSCVL+S GF VTA+VK+P GFE LLPCP ++++L EH
Sbjct: 39 RTLIDGTDSNIYHLDLLVQQ--PYDASTTTAQPP-WFDGFG-----GRDGVAAVTVGHPIQRILLHLRAEGVGLEEGMSWPERGGKRADASSSYRQGYQQLDNYLVRVLAGKSAWDLPPGRVGKSELQAARIALGKFEVLLRADCLAVDLPLLQPYLAKAVPAAQVADAARETEDLLESGEAHYLVFGKEGGKLLRDNRWDLQLWDFAHKLVESRSTTAEGYLCGSSASARRQRMPGDGRRAVVYNSPSFHITGVAMFSCVLMSLGFDVTAVVKEPGAGFEHLLPCPDRVVALSEH 326
BLAST of mRNA_P-canaliculata_contig10121.210.1 vs. uniprot
Match: A0A6H5KKJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ1_9PHAE) HSP 1 Score: 276 bits (706), Expect = 2.480e-75 Identity = 155/322 (48.14%), Postives = 199/322 (61.80%), Query Frame = 2
Query: 866 QTLIDTAGTHVFHLDLHLRRRSPSNSSPNNASSVRWFEGFGETMQAGSAAAAVATLSHPIRRMLSFLLKEEVGLEEALFWTEGQGD---------QGYQLLDNYLVRVLAGQSTWELPPGAVGEAEFH----KAKIALGKFEVLLRADCLAVDLPLLGPYIGRVFSAH---NALEITSAGIDAEISPVLTPGPIAESLIRRNRWDLQLWDYGESLIMSRSTTLDSYLCSKQTWATKERQPGTGRRAAVFNSPDFHATSLAMFSCVLVSWGFHVTAIVKKPQVGFEELLPCPQKIISL-EHAITSRDSYRMVNSSVSQLLGLP 1780
+TLID + + HLDL +++ P ++SP A WF+GFG G A T+ HPI+R+L L E VGLEE + W E G QGYQ LDNYLVRVLAG+S W+LPPG VG+ E A+IALGKFEVLLRADCLAVDLPLL PY+ + A +A T +++ + L G L+R NRWDLQLWD+ L+ SRSTT + YLC T A ++R PG GRRA V+NSP FH T +AMFSCVL+S GF VTA+VK+P GFE LLPCP ++++L EH + +++ + L LP
Sbjct: 39 RTLIDGTDSSIHHLDLLVQQ--PYDASPTTAQPP-WFDGFG-----GRDGVAAVTIGHPIQRILLHLRAEGVGLEEGMSWPERGGKRADASSSYRQGYQQLDNYLVRVLAGKSAWDLPPGRVGKTELQVGIPAARIALGKFEVLLRADCLAVDLPLLQPYLAKAVPAAQVADAARETEDLLESGEAYYLVFGKEGGKLLRDNRWDLQLWDFAHKLVESRSTTAEGYLCGSSTSARRQRMPGDGRRAVVYNSPSFHVTGVAMFSCVLMSLGFDVTAVVKEPGAGFEHLLPCPDRVVALSEHYLRDLPG-EILDEEAAAALSLP 351
BLAST of mRNA_P-canaliculata_contig10121.210.1 vs. uniprot
Match: A0A6H5KJA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA8_9PHAE) HSP 1 Score: 241 bits (616), Expect = 2.000e-68 Identity = 114/178 (64.04%), Postives = 137/178 (76.97%), Query Frame = 2
Query: 2717 VQGKLESVRRDYQGLFSCLEEMCLSGRGDFEIEAVGSSGSMLNELDRHPCTNARYKEGRDLRYSDFYSRISAGHFVVTATAGHDYEFDRATSSVPTALLLERPLVMSSALLDAYPCLKNSRVHRMVANDDLCLNLHAAYDLTQADYDEMELEARDCKLRMWKQTRETVAEMVSGWVVD 3250
VQG ++S RR+Y L CLE MC +GR ++++ AVG+ G + +++ R C R E R L Y +FY+ ISA HFVVTA AGHDYE+D+ATS+VPTALLLERPLV+SS LLDAYPCL+ SRVH MVANDDLCLNL AYDLT +YDEMELEARDCKL MW+ RETVA M SGW +D
Sbjct: 88 VQGNMQSHRRNYPELTRCLEAMCSTGRDNYQLVAVGARGDLPDDVRRMQCVEQRTTEWRHLEYPEFYANISAAHFVVTAAAGHDYEYDKATSTVPTALLLERPLVISSTLLDAYPCLRKSRVHSMVANDDLCLNLQTAYDLTTEEYDEMELEARDCKLEMWRHARETVAGMASGWTLD 265
BLAST of mRNA_P-canaliculata_contig10121.210.1 vs. uniprot
Match: D8LSI3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI3_ECTSI) HSP 1 Score: 234 bits (597), Expect = 3.510e-67 Identity = 110/174 (63.22%), Postives = 134/174 (77.01%), Query Frame = 2
Query: 2729 LESVRRDYQGLFSCLEEMCLSGRGDFEIEAVGSSGSMLNELDRHPCTNARYKEGRDLRYSDFYSRISAGHFVVTATAGHDYEFDRATSSVPTALLLERPLVMSSALLDAYPCLKNSRVHRMVANDDLCLNLHAAYDLTQADYDEMELEARDCKLRMWKQTRETVAEMVSGWVVD 3250
++S RR+Y L CLE MC +GR ++++ AVG+ G + +++ C R E R L Y +FY+ ISAGHFVVTA AGH YE+D+ATS+VPTALLLERPLVMSS LLDAYPCL+ SRVH MVANDDLC+NL AYDLT+ +YDEMELEARDCKL MW+ RETVA M SGW +D
Sbjct: 1 MQSHRRNYPELTRCLEAMCSTGRDNYQLVAVGARGDLPDDVSAMQCVEQRTTEWRHLEYPEFYANISAGHFVVTAAAGHGYEYDKATSTVPTALLLERPLVMSSTLLDAYPCLRKSRVHSMVANDDLCVNLQTAYDLTREEYDEMELEARDCKLEMWRHARETVAGMASGWTLD 174
BLAST of mRNA_P-canaliculata_contig10121.210.1 vs. uniprot
Match: A0A482SI13_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SI13_9ARCH) HSP 1 Score: 72.4 bits (176), Expect = 8.670e-11 Identity = 40/100 (40.00%), Postives = 57/100 (57.00%), Query Frame = 2
Query: 2891 RDLRYSDFYSRISAGHFVVT-ATAGHDYEFDRATSSVPTALLLERPLVMSSALLDAYPCLKNSRVHRMVANDDLCLNLHAAYDLTQADYDEMELEARDCK 3187
R + + FY I+ F+VT A ++Y RA+SS+PTA++ E PLV+++ LL+ Y CL +HR VA+ D C L A LT + M E R CK
Sbjct: 15 RAVAHPYFYGAIARADFLVTFANPAYEYNITRASSSIPTAVMTEVPLVLTTDLLNKYDCLYGGSIHRRVADTDDCKALKNAIQLTDQERKTMREEIRRCK 114
BLAST of mRNA_P-canaliculata_contig10121.210.1 vs. uniprot
Match: A0A482SBI1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SBI1_9ARCH) HSP 1 Score: 72.0 bits (175), Expect = 1.050e-9 Identity = 49/173 (28.32%), Postives = 80/173 (46.24%), Query Frame = 2
Query: 2699 SDRSRTVQGKLESVRRDYQGLFSCLEEMCLSGRGDFE----IEAVGSSGSMLNELDRHPCTNARYKE----GRDLRYSDFYSRISAGHFVVTATAGHD--YEFDRATSSVPTALLLERPLVMSSALLDAYPCLKNSRVHRMVANDDLCLNLHAAYDLTQADYDEMELEARDCK 3187
+ R + G + RRDY GLF+C++E+ S + + V + S L D ++ DL + + ++ +FV+ + Y +R +S+VPTAL + PLV+ A L Y CLK+S +H VA C ++ A L+ AD + M E C+
Sbjct: 60 NTRLLVLPGTIRYNRRDYTGLFTCVDEISKSANDSTQKSLNFKVVVTGRSYLKAADGRVYIPEHLRQLIEIQADLPLQSYLTLLAQANFVLLFANNNQLGYNTNRISSTVPTALGVTTPLVLPQATLSLYACLKSSSMHNRVAGKTNCDSMKNALSLSHADAERMRQETALCR 232
BLAST of mRNA_P-canaliculata_contig10121.210.1 vs. uniprot
Match: A0A482SHX3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SHX3_9ARCH) HSP 1 Score: 73.6 bits (179), Expect = 1.390e-9 Identity = 54/201 (26.87%), Postives = 94/201 (46.77%), Query Frame = 2
Query: 2717 VQGKLE-SVRRDYQGLFSCLEEMCLSGRGDFEIEAVGSSGSMLNELD-----RHPCTNARYKEGRDLRYSDFYSRISAGHFVVTATAGHDYEFDRATSSVPTALLLERPLVMSSALLDAYPCLKNSRVHRMVANDDLCLNLHAAYDLTQADYDEMELEARDCKLRMWKQTRETVAEMVSGWVVD*DSGKAQNQPTRARPRP 3301
+QG L RRD+ LF+C+ E + R D E+ +G ++ L + T ++ + Y F+ +S+ + + + YE R TSS+PT+L+ P+++ + LL Y CL+N VHR + D C ++ A L +M E C ++ ++R T+ ++V G + + G N T P P
Sbjct: 216 LQGILTPGKRRDFNRLFACMIE--IKRRHDIELVLIGKVATLGANLTIPLKLSNITTVVKWPD-----YLGFFRNVSSADYAILFSKFDFYEHGRITSSIPTSLVSNLPIILPNKLLSDYACLRNQYVHRATSMADDCSSVKAVLSLRHERQQQMRNEVAFCVKQLLIESRATLHDIVFG--ENGNEGLDSNNGTLVIPDP 407 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10121.210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10121.210.1 >prot_P-canaliculata_contig10121.210.1 ID=prot_P-canaliculata_contig10121.210.1|Name=mRNA_P-canaliculata_contig10121.210.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=428bp MAPTPFTVVSSIVFAVATSVVVCTDTSVVQTLIDTAGTHVFHLDLHLRRRback to top mRNA from alignment at P-canaliculata_contig10121:1231..10794+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10121.210.1 ID=mRNA_P-canaliculata_contig10121.210.1|Name=mRNA_P-canaliculata_contig10121.210.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=9564bp|location=Sequence derived from alignment at P-canaliculata_contig10121:1231..10794+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10121:1231..10794+ >mRNA_P-canaliculata_contig10121.210.1 ID=mRNA_P-canaliculata_contig10121.210.1|Name=mRNA_P-canaliculata_contig10121.210.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2568bp|location=Sequence derived from alignment at P-canaliculata_contig10121:1231..10794+ (Pelvetia canaliculata dioecious)back to top |