mRNA_P-canaliculata_contig10121.209.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_P-canaliculata_contig10121.209.1 vs. uniprot
Match: A0A6H5KJA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA8_9PHAE) HSP 1 Score: 275 bits (704), Expect = 3.230e-80 Identity = 140/262 (53.44%), Postives = 168/262 (64.12%), Query Frame = 3 Query: 2745 SNLGGLFRRPGVVYPIHPTGHMRVPRPSGRKKFGSDVVEGGRRTVAR-----------------------------------FIVQGKLESVRRDYQGLFSCLEEMCLSGRGDFEIEAVGSSGSMLNELDRHPCTNARYKEGRDLRYSDFYSRISAGHFVVTATAGHDYEFDRATSSVPTALLLERPLVMSSALLDAYPCLKNSRVHRMVANDDLCLNLHAAYDLTQADYDEMELEARDCKLRMWKQTRETVAEMVSGWVVD 3425
S G LFRRPGVVYPIHPTGH+R+PRP ++ F R R F+VQG ++S RR+Y L CLE MC +GR ++++ AVG+ G + +++ R C R E R L Y +FY+ ISA HFVVTA AGHDYE+D+ATS+VPTALLLERPLV+SS LLDAYPCL+ SRVH MVANDDLCLNL AYDLT +YDEMELEARDCKL MW+ RETVA M SGW +D
Sbjct: 6 STFGALFRRPGVVYPIHPTGHLRLPRP--KRPFAGQQQRWRRHLSGREXXXXXXXXXXXXXXXXXXXXXXXXXXXXREEDVVFVVQGNMQSHRRNYPELTRCLEAMCSTGRDNYQLVAVGARGDLPDDVRRMQCVEQRTTEWRHLEYPEFYANISAAHFVVTAAAGHDYEYDKATSTVPTALLLERPLVISSTLLDAYPCLRKSRVHSMVANDDLCLNLQTAYDLTTEEYDEMELEARDCKLEMWRHARETVAGMASGWTLD 265
BLAST of mRNA_P-canaliculata_contig10121.209.1 vs. uniprot
Match: D8LSI3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI3_ECTSI) HSP 1 Score: 234 bits (596), Expect = 4.960e-67 Identity = 110/174 (63.22%), Postives = 134/174 (77.01%), Query Frame = 3 Query: 2904 LESVRRDYQGLFSCLEEMCLSGRGDFEIEAVGSSGSMLNELDRHPCTNARYKEGRDLRYSDFYSRISAGHFVVTATAGHDYEFDRATSSVPTALLLERPLVMSSALLDAYPCLKNSRVHRMVANDDLCLNLHAAYDLTQADYDEMELEARDCKLRMWKQTRETVAEMVSGWVVD 3425
++S RR+Y L CLE MC +GR ++++ AVG+ G + +++ C R E R L Y +FY+ ISAGHFVVTA AGH YE+D+ATS+VPTALLLERPLVMSS LLDAYPCL+ SRVH MVANDDLC+NL AYDLT+ +YDEMELEARDCKL MW+ RETVA M SGW +D
Sbjct: 1 MQSHRRNYPELTRCLEAMCSTGRDNYQLVAVGARGDLPDDVSAMQCVEQRTTEWRHLEYPEFYANISAGHFVVTAAAGHGYEYDKATSTVPTALLLERPLVMSSTLLDAYPCLRKSRVHSMVANDDLCVNLQTAYDLTREEYDEMELEARDCKLEMWRHARETVAGMASGWTLD 174
BLAST of mRNA_P-canaliculata_contig10121.209.1 vs. uniprot
Match: D8LSI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI2_ECTSI) HSP 1 Score: 152 bits (383), Expect = 1.010e-33 Identity = 85/172 (49.42%), Postives = 108/172 (62.79%), Query Frame = 2 Query: 866 QTLIDTAGTHVFHLDLHLRRRSPSNSSPNNASSVRWFEGFGETMQAGSAAAAVATLSHPIRRMLSFLLKEEVGLEEALFWTEGQGD---------QGYQLLDNYLVRVLAGQSTWELPPGAVGEAEFHKAKIALGKFEVLLRADCLAVDLPLLGPYIGRVFSAHNALEITSE 1354
+TLID ++++HLDL +++ P ++S A WF+GFG G A T+ HPI+R+L L E VGLEE + W E G QGYQ LDNYLVRVLAG+S W+LPPG VG++E A+IALGKFEVLLRADCLAVDLPLL PY+ + A + E
Sbjct: 39 RTLIDGTDSNIYHLDLLVQQ--PYDASTTTAQPP-WFDGFG-----GRDGVAAVTVGHPIQRILLHLRAEGVGLEEGMSWPERGGKRADASSSYRQGYQQLDNYLVRVLAGKSAWDLPPGRVGKSELQAARIALGKFEVLLRADCLAVDLPLLQPYLAKAVPAAQVADAARE 202
BLAST of mRNA_P-canaliculata_contig10121.209.1 vs. uniprot
Match: A0A6H5KKJ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ1_9PHAE) HSP 1 Score: 147 bits (370), Expect = 2.600e-32 Identity = 86/176 (48.86%), Postives = 106/176 (60.23%), Query Frame = 2 Query: 866 QTLIDTAGTHVFHLDLHLRRRSPSNSSPNNASSVRWFEGFGETMQAGSAAAAVATLSHPIRRMLSFLLKEEVGLEEALFWTEGQGD---------QGYQLLDNYLVRVLAGQSTWELPPGAVGEAEFH----KAKIALGKFEVLLRADCLAVDLPLLGPYIGRVFSAHNALEITSE 1354
+TLID + + HLDL +++ P ++SP A WF+GFG G A T+ HPI+R+L L E VGLEE + W E G QGYQ LDNYLVRVLAG+S W+LPPG VG+ E A+IALGKFEVLLRADCLAVDLPLL PY+ + A + E
Sbjct: 39 RTLIDGTDSSIHHLDLLVQQ--PYDASPTTAQPP-WFDGFG-----GRDGVAAVTIGHPIQRILLHLRAEGVGLEEGMSWPERGGKRADASSSYRQGYQQLDNYLVRVLAGKSAWDLPPGRVGKTELQVGIPAARIALGKFEVLLRADCLAVDLPLLQPYLAKAVPAAQVADAARE 206
BLAST of mRNA_P-canaliculata_contig10121.209.1 vs. uniprot
Match: A0A482SHX3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SHX3_9ARCH) HSP 1 Score: 78.6 bits (192), Expect = 3.620e-11 Identity = 57/204 (27.94%), Postives = 97/204 (47.55%), Query Frame = 3 Query: 2883 RFIVQGKLE-SVRRDYQGLFSCLEEMCLSGRGDFEIEAVGSSGSMLNELD-----RHPCTNARYKEGRDLRYSDFYSRISAGHFVVTATAGHDYEFDRATSSVPTALLLERPLVMSSALLDAYPCLKNSRVHRMVANDDLCLNLHAAYDLTQADYDEMELEARDCKLRMWKQTRETVAEMVSGWVVD*DSGKAQNQPTRARPRP 3476
RFI+QG L RRD+ LF+C+ E + R D E+ +G ++ L + T ++ + Y F+ +S+ + + + YE R TSS+PT+L+ P+++ + LL Y CL+N VHR + D C ++ A L +M E C ++ ++R T+ ++V G + + G N T P P
Sbjct: 213 RFILQGILTPGKRRDFNRLFACMIE--IKRRHDIELVLIGKVATLGANLTIPLKLSNITTVVKWPD-----YLGFFRNVSSADYAILFSKFDFYEHGRITSSIPTSLVSNLPIILPNKLLSDYACLRNQYVHRATSMADDCSSVKAVLSLRHERQQQMRNEVAFCVKQLLIESRATLHDIVFG--ENGNEGLDSNNGTLVIPDP 407
BLAST of mRNA_P-canaliculata_contig10121.209.1 vs. uniprot
Match: A0A482SI13_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SI13_9ARCH) HSP 1 Score: 72.4 bits (176), Expect = 8.990e-11 Identity = 40/100 (40.00%), Postives = 57/100 (57.00%), Query Frame = 3 Query: 3066 RDLRYSDFYSRISAGHFVVT-ATAGHDYEFDRATSSVPTALLLERPLVMSSALLDAYPCLKNSRVHRMVANDDLCLNLHAAYDLTQADYDEMELEARDCK 3362
R + + FY I+ F+VT A ++Y RA+SS+PTA++ E PLV+++ LL+ Y CL +HR VA+ D C L A LT + M E R CK
Sbjct: 15 RAVAHPYFYGAIARADFLVTFANPAYEYNITRASSSIPTAVMTEVPLVLTTDLLNKYDCLYGGSIHRRVADTDDCKALKNAIQLTDQERKTMREEIRRCK 114
BLAST of mRNA_P-canaliculata_contig10121.209.1 vs. uniprot
Match: A0A482SBI1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SBI1_9ARCH) HSP 1 Score: 74.3 bits (181), Expect = 1.820e-10 Identity = 54/185 (29.19%), Postives = 84/185 (45.41%), Query Frame = 3 Query: 2841 FGSDVVEGGRRTVARFIV-QGKLESVRRDYQGLFSCLEEMCLSGRGDFE----IEAVGSSGSMLNELDRHPCTNARYKE----GRDLRYSDFYSRISAGHFVVTATAGHD--YEFDRATSSVPTALLLERPLVMSSALLDAYPCLKNSRVHRMVANDDLCLNLHAAYDLTQADYDEMELEARDCK 3362
G VEG R +V G + RRDY GLF+C++E+ S + + V + S L D ++ DL + + ++ +FV+ + Y +R +S+VPTAL + PLV+ A L Y CLK+S +H VA C ++ A L+ AD + M E C+
Sbjct: 48 LGESKVEGTLNNNTRLLVLPGTIRYNRRDYTGLFTCVDEISKSANDSTQKSLNFKVVVTGRSYLKAADGRVYIPEHLRQLIEIQADLPLQSYLTLLAQANFVLLFANNNQLGYNTNRISSTVPTALGVTTPLVLPQATLSLYACLKSSSMHNRVAGKTNCDSMKNALSLSHADAERMRQETALCR 232 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10121.209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10121.209.1 >prot_P-canaliculata_contig10121.209.1 ID=prot_P-canaliculata_contig10121.209.1|Name=mRNA_P-canaliculata_contig10121.209.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=207bp MRVPRPSGRKKFGSDVVEGGRRTVARFIVQGKLESVRRDYQGLFSCLEEMback to top mRNA from alignment at P-canaliculata_contig10121:1231..10794+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10121.209.1 ID=mRNA_P-canaliculata_contig10121.209.1|Name=mRNA_P-canaliculata_contig10121.209.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=9564bp|location=Sequence derived from alignment at P-canaliculata_contig10121:1231..10794+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10121:1231..10794+ >mRNA_P-canaliculata_contig10121.209.1 ID=mRNA_P-canaliculata_contig10121.209.1|Name=mRNA_P-canaliculata_contig10121.209.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1242bp|location=Sequence derived from alignment at P-canaliculata_contig10121:1231..10794+ (Pelvetia canaliculata dioecious)back to top |