mRNA_P-canaliculata_contig101148.202.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig101148.202.1
Unique NamemRNA_P-canaliculata_contig101148.202.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig101148.202.1 vs. uniprot
Match: C6DZC6_GEOSM (KWG Leptospira repeat protein n=1 Tax=Geobacter sp. (strain M21) TaxID=443144 RepID=C6DZC6_GEOSM)

HSP 1 Score: 55.8 bits (133), Expect = 4.770e-9
Identity = 24/42 (57.14%), Postives = 28/42 (66.67%), Query Frame = 1
Query:    1 PVNEDNAWGYLNAEGTMVIPPRYDDAYGFDQGIAAVVQNGVA 126
            P+     WGY+N  G MV+ P YDDAY FD G+AAVV NG A
Sbjct:   25 PIGFAGKWGYVNDAGKMVVKPIYDDAYDFDDGLAAVVSNGKA 66          
BLAST of mRNA_P-canaliculata_contig101148.202.1 vs. uniprot
Match: A0A142L309_9BACT (Uncharacterized protein n=2 Tax=unclassified Bacteroidetes TaxID=37452 RepID=A0A142L309_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 1.630e-7
Identity = 23/52 (44.23%), Postives = 33/52 (63.46%), Query Frame = 1
Query:    1 PVNEDNAWGYLNAEGTMVIPPRYDDAYGFDQGIAAVVQNGVAQYIDTKGRRV 156
            PV   N WGY+N+EGTM++PP +D A  F +G+A V    +   I+ KG R+
Sbjct:   30 PVERKNKWGYMNSEGTMILPPNFDYADEFYEGLAIVAVKNLPCVINDKGLRI 81          
BLAST of mRNA_P-canaliculata_contig101148.202.1 vs. uniprot
Match: A0A850LBV8_9BACT (WG repeat-containing protein n=1 Tax=Flavobacteriia bacterium TaxID=2044941 RepID=A0A850LBV8_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 4.230e-7
Identity = 23/52 (44.23%), Postives = 33/52 (63.46%), Query Frame = 1
Query:    1 PVNEDNAWGYLNAEGTMVIPPRYDDAYGFDQGIAAVVQNGVAQYIDTKGRRV 156
            P +E++ WGY+N +G   IPP+YD A  F +G+AAV   G   YI+ K  R+
Sbjct:   27 PCSENHKWGYINTQGEWAIPPQYDLAEVFTEGVAAVRHEGFYFYINEKNERL 78          
BLAST of mRNA_P-canaliculata_contig101148.202.1 vs. uniprot
Match: UPI000BAAA282 (WG repeat-containing protein n=1 Tax=Actibacterium pelagium TaxID=2029103 RepID=UPI000BAAA282)

HSP 1 Score: 53.1 bits (126), Expect = 1.080e-6
Identity = 23/45 (51.11%), Postives = 32/45 (71.11%), Query Frame = 1
Query:   22 WGYLNAEGTMVIPPRYDDAYGFDQGIAAVVQNGVAQYIDTKGRRV 156
            WG+++AEG  +IPP YD+ YGF  G+AAV + G   +IDT G+ V
Sbjct:  101 WGFVSAEGE-IIPPGYDEVYGFHDGVAAVSREGKWGFIDTTGKDV 144          
BLAST of mRNA_P-canaliculata_contig101148.202.1 vs. uniprot
Match: UPI001C11C1B0 (WG repeat-containing protein n=1 Tax=Alkaliphilus flagellatus TaxID=2841507 RepID=UPI001C11C1B0)

HSP 1 Score: 50.1 bits (118), Expect = 1.380e-6
Identity = 19/46 (41.30%), Postives = 31/46 (67.39%), Query Frame = 1
Query:   22 WGYLNAEGTMVIPPRYDDAYGFDQGIAAVVQNGVAQYIDTKGRRVW 159
            W Y+++ G +V+ P+++ AY F+ GIA V QNG   YI+  G+ +W
Sbjct:   37 WRYIDSTGKVVVGPKFEFAYQFNNGIAEVWQNGKLGYINKSGKFIW 82          
BLAST of mRNA_P-canaliculata_contig101148.202.1 vs. uniprot
Match: A0A329LBP0_9BACL (Uncharacterized protein n=2 Tax=Paenibacillus sp. YN15 TaxID=1742774 RepID=A0A329LBP0_9BACL)

HSP 1 Score: 49.7 bits (117), Expect = 1.800e-5
Identity = 21/46 (45.65%), Postives = 27/46 (58.70%), Query Frame = 1
Query:   10 EDNAWGYLNAEGTMVIPPRYDDAYGFDQGIAAVVQNGVAQYIDTKG 147
            +D  WGY  A+GT VIPP+YD A  F   +A V  N   Q I+ +G
Sbjct:  135 QDGKWGYFQADGTTVIPPKYDYATDFSDELATVYINNKLQLINVRG 180          
BLAST of mRNA_P-canaliculata_contig101148.202.1 vs. uniprot
Match: A0A521W5V1_9GAMM (WG repeat-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A521W5V1_9GAMM)

HSP 1 Score: 49.7 bits (117), Expect = 1.830e-5
Identity = 24/44 (54.55%), Postives = 28/44 (63.64%), Query Frame = 1
Query:   25 GYLNAEGTMVIPPRYDDAYGFDQGIAAVVQNGVAQYIDTKGRRV 156
            GYL+A G +VIPP YD A+GF  GIA V + G    ID  GR V
Sbjct:  844 GYLDARGGVVIPPLYDQAWGFRDGIAVVERAGKCGVIDRDGRIV 887          
BLAST of mRNA_P-canaliculata_contig101148.202.1 vs. uniprot
Match: A0A660MJK9_9GAMM (WG repeat-containing protein n=1 Tax=Cardiobacterium sp. TaxID=2382124 RepID=A0A660MJK9_9GAMM)

HSP 1 Score: 48.1 bits (113), Expect = 6.330e-5
Identity = 19/40 (47.50%), Postives = 28/40 (70.00%), Query Frame = 1
Query:    1 PVNEDNAWGYLNAEGTMVIPPRYDDAYGFDQGIAAVVQNG 120
            PV   N WGY++++G  V+PPRYD A  F  G+A V+++G
Sbjct:  168 PVRRGNLWGYIDSDGNPVVPPRYDKAGVFYDGMARVMKDG 207          
BLAST of mRNA_P-canaliculata_contig101148.202.1 vs. uniprot
Match: A0A8J7HB44_9FIRM (WG repeat-containing protein n=1 Tax=Mobilitalea sibirica TaxID=1462919 RepID=A0A8J7HB44_9FIRM)

HSP 1 Score: 48.1 bits (113), Expect = 6.390e-5
Identity = 21/50 (42.00%), Postives = 31/50 (62.00%), Query Frame = 1
Query:   10 EDNAWGYLNAEGTMVIPPRYDDAYGFDQGIAAVVQNGVAQYIDTKGRRVW 159
            E N +GY+N EGT VIPP YD A  F + +A V  +   Q I+ +G+ ++
Sbjct:   91 EGNKYGYINREGTFVIPPTYDGAGDFMEDLAVVYNDETFQVINEQGKVIF 140          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101148.202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
C6DZC6_GEOSM4.770e-957.14KWG Leptospira repeat protein n=1 Tax=Geobacter sp... [more]
A0A142L309_9BACT1.630e-744.23Uncharacterized protein n=2 Tax=unclassified Bacte... [more]
A0A850LBV8_9BACT4.230e-744.23WG repeat-containing protein n=1 Tax=Flavobacterii... [more]
UPI000BAAA2821.080e-651.11WG repeat-containing protein n=1 Tax=Actibacterium... [more]
UPI001C11C1B01.380e-641.30WG repeat-containing protein n=1 Tax=Alkaliphilus ... [more]
A0A329LBP0_9BACL1.800e-545.65Uncharacterized protein n=2 Tax=Paenibacillus sp. ... [more]
A0A521W5V1_9GAMM1.830e-554.55WG repeat-containing protein n=1 Tax=Gammaproteoba... [more]
A0A660MJK9_9GAMM6.330e-547.50WG repeat-containing protein n=1 Tax=Cardiobacteri... [more]
A0A8J7HB44_9FIRM6.390e-542.00WG repeat-containing protein n=1 Tax=Mobilitalea s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig101148contigP-canaliculata_contig101148:845..1012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815585.0124857-CDS-P-canaliculata_contig101148:844..10121622815585.0124857-CDS-P-canaliculata_contig101148:844..1012Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101148 845..1012 -
1693494151.2348716-CDS-P-canaliculata_contig101148:844..10121693494151.2348716-CDS-P-canaliculata_contig101148:844..1012Pelvetia canaliculata dioeciousCDSP-canaliculata_contig101148 845..1012 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig101148.202.1prot_P-canaliculata_contig101148.202.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig101148 845..1012 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig101148.202.1

>prot_P-canaliculata_contig101148.202.1 ID=prot_P-canaliculata_contig101148.202.1|Name=mRNA_P-canaliculata_contig101148.202.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=56bp
PVNEDNAWGYLNAEGTMVIPPRYDDAYGFDQGIAAVVQNGVAQYIDTKGR
RVWPR*
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mRNA from alignment at P-canaliculata_contig101148:845..1012-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101148.202.1 ID=mRNA_P-canaliculata_contig101148.202.1|Name=mRNA_P-canaliculata_contig101148.202.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=168bp|location=Sequence derived from alignment at P-canaliculata_contig101148:845..1012- (Pelvetia canaliculata dioecious)
CCCGTTAACGAAGACAACGCCTGGGGCTACCTGAACGCCGAAGGCACCAT GGTCATCCCACCGCGTTACGACGACGCCTACGGTTTCGATCAGGGCATCG CGGCCGTGGTGCAGAACGGGGTGGCCCAATACATCGACACCAAGGGGCGG CGGGTGTGGCCGCGGTGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig101148:845..1012-

>mRNA_P-canaliculata_contig101148.202.1 ID=mRNA_P-canaliculata_contig101148.202.1|Name=mRNA_P-canaliculata_contig101148.202.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at P-canaliculata_contig101148:845..1012- (Pelvetia canaliculata dioecious)
CCCGTTAACGAAGACAACGCCTGGGGCTACCTGAACGCCGAAGGCACCAT
GGTCATCCCACCGCGTTACGACGACGCCTACGGTTTCGATCAGGGCATCG
CGGCCGTGGTGCAGAACGGGGTGGCCCAATACATCGACACCAAGGGGCGG
CGGGTGTGGCCGCGGTGACCCGTTAACGAAGACAACGCCTGGGGCTACCT
GAACGCCGAAGGCACCATGGTCATCCCACCGCGTTACGACGACGCCTACG
GTTTCGATCAGGGCATCGCGGCCGTGGTGCAGAACGGGGTGGCCCAATAC
ATCGACACCAAGGGGCGGCGGGTGTGGCCGCGGTGA
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