mRNA_P-canaliculata_contig101148.202.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig101148.202.1 vs. uniprot
Match: C6DZC6_GEOSM (KWG Leptospira repeat protein n=1 Tax=Geobacter sp. (strain M21) TaxID=443144 RepID=C6DZC6_GEOSM) HSP 1 Score: 55.8 bits (133), Expect = 4.770e-9 Identity = 24/42 (57.14%), Postives = 28/42 (66.67%), Query Frame = 1 Query: 1 PVNEDNAWGYLNAEGTMVIPPRYDDAYGFDQGIAAVVQNGVA 126 P+ WGY+N G MV+ P YDDAY FD G+AAVV NG A Sbjct: 25 PIGFAGKWGYVNDAGKMVVKPIYDDAYDFDDGLAAVVSNGKA 66
BLAST of mRNA_P-canaliculata_contig101148.202.1 vs. uniprot
Match: A0A142L309_9BACT (Uncharacterized protein n=2 Tax=unclassified Bacteroidetes TaxID=37452 RepID=A0A142L309_9BACT) HSP 1 Score: 55.5 bits (132), Expect = 1.630e-7 Identity = 23/52 (44.23%), Postives = 33/52 (63.46%), Query Frame = 1 Query: 1 PVNEDNAWGYLNAEGTMVIPPRYDDAYGFDQGIAAVVQNGVAQYIDTKGRRV 156 PV N WGY+N+EGTM++PP +D A F +G+A V + I+ KG R+ Sbjct: 30 PVERKNKWGYMNSEGTMILPPNFDYADEFYEGLAIVAVKNLPCVINDKGLRI 81
BLAST of mRNA_P-canaliculata_contig101148.202.1 vs. uniprot
Match: A0A850LBV8_9BACT (WG repeat-containing protein n=1 Tax=Flavobacteriia bacterium TaxID=2044941 RepID=A0A850LBV8_9BACT) HSP 1 Score: 54.3 bits (129), Expect = 4.230e-7 Identity = 23/52 (44.23%), Postives = 33/52 (63.46%), Query Frame = 1 Query: 1 PVNEDNAWGYLNAEGTMVIPPRYDDAYGFDQGIAAVVQNGVAQYIDTKGRRV 156 P +E++ WGY+N +G IPP+YD A F +G+AAV G YI+ K R+ Sbjct: 27 PCSENHKWGYINTQGEWAIPPQYDLAEVFTEGVAAVRHEGFYFYINEKNERL 78
BLAST of mRNA_P-canaliculata_contig101148.202.1 vs. uniprot
Match: UPI000BAAA282 (WG repeat-containing protein n=1 Tax=Actibacterium pelagium TaxID=2029103 RepID=UPI000BAAA282) HSP 1 Score: 53.1 bits (126), Expect = 1.080e-6 Identity = 23/45 (51.11%), Postives = 32/45 (71.11%), Query Frame = 1 Query: 22 WGYLNAEGTMVIPPRYDDAYGFDQGIAAVVQNGVAQYIDTKGRRV 156 WG+++AEG +IPP YD+ YGF G+AAV + G +IDT G+ V Sbjct: 101 WGFVSAEGE-IIPPGYDEVYGFHDGVAAVSREGKWGFIDTTGKDV 144
BLAST of mRNA_P-canaliculata_contig101148.202.1 vs. uniprot
Match: UPI001C11C1B0 (WG repeat-containing protein n=1 Tax=Alkaliphilus flagellatus TaxID=2841507 RepID=UPI001C11C1B0) HSP 1 Score: 50.1 bits (118), Expect = 1.380e-6 Identity = 19/46 (41.30%), Postives = 31/46 (67.39%), Query Frame = 1 Query: 22 WGYLNAEGTMVIPPRYDDAYGFDQGIAAVVQNGVAQYIDTKGRRVW 159 W Y+++ G +V+ P+++ AY F+ GIA V QNG YI+ G+ +W Sbjct: 37 WRYIDSTGKVVVGPKFEFAYQFNNGIAEVWQNGKLGYINKSGKFIW 82
BLAST of mRNA_P-canaliculata_contig101148.202.1 vs. uniprot
Match: A0A329LBP0_9BACL (Uncharacterized protein n=2 Tax=Paenibacillus sp. YN15 TaxID=1742774 RepID=A0A329LBP0_9BACL) HSP 1 Score: 49.7 bits (117), Expect = 1.800e-5 Identity = 21/46 (45.65%), Postives = 27/46 (58.70%), Query Frame = 1 Query: 10 EDNAWGYLNAEGTMVIPPRYDDAYGFDQGIAAVVQNGVAQYIDTKG 147 +D WGY A+GT VIPP+YD A F +A V N Q I+ +G Sbjct: 135 QDGKWGYFQADGTTVIPPKYDYATDFSDELATVYINNKLQLINVRG 180
BLAST of mRNA_P-canaliculata_contig101148.202.1 vs. uniprot
Match: A0A521W5V1_9GAMM (WG repeat-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A521W5V1_9GAMM) HSP 1 Score: 49.7 bits (117), Expect = 1.830e-5 Identity = 24/44 (54.55%), Postives = 28/44 (63.64%), Query Frame = 1 Query: 25 GYLNAEGTMVIPPRYDDAYGFDQGIAAVVQNGVAQYIDTKGRRV 156 GYL+A G +VIPP YD A+GF GIA V + G ID GR V Sbjct: 844 GYLDARGGVVIPPLYDQAWGFRDGIAVVERAGKCGVIDRDGRIV 887
BLAST of mRNA_P-canaliculata_contig101148.202.1 vs. uniprot
Match: A0A660MJK9_9GAMM (WG repeat-containing protein n=1 Tax=Cardiobacterium sp. TaxID=2382124 RepID=A0A660MJK9_9GAMM) HSP 1 Score: 48.1 bits (113), Expect = 6.330e-5 Identity = 19/40 (47.50%), Postives = 28/40 (70.00%), Query Frame = 1 Query: 1 PVNEDNAWGYLNAEGTMVIPPRYDDAYGFDQGIAAVVQNG 120 PV N WGY++++G V+PPRYD A F G+A V+++G Sbjct: 168 PVRRGNLWGYIDSDGNPVVPPRYDKAGVFYDGMARVMKDG 207
BLAST of mRNA_P-canaliculata_contig101148.202.1 vs. uniprot
Match: A0A8J7HB44_9FIRM (WG repeat-containing protein n=1 Tax=Mobilitalea sibirica TaxID=1462919 RepID=A0A8J7HB44_9FIRM) HSP 1 Score: 48.1 bits (113), Expect = 6.390e-5 Identity = 21/50 (42.00%), Postives = 31/50 (62.00%), Query Frame = 1 Query: 10 EDNAWGYLNAEGTMVIPPRYDDAYGFDQGIAAVVQNGVAQYIDTKGRRVW 159 E N +GY+N EGT VIPP YD A F + +A V + Q I+ +G+ ++ Sbjct: 91 EGNKYGYINREGTFVIPPTYDGAGDFMEDLAVVYNDETFQVINEQGKVIF 140 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101148.202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig101148.202.1 >prot_P-canaliculata_contig101148.202.1 ID=prot_P-canaliculata_contig101148.202.1|Name=mRNA_P-canaliculata_contig101148.202.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=56bp PVNEDNAWGYLNAEGTMVIPPRYDDAYGFDQGIAAVVQNGVAQYIDTKGRback to top mRNA from alignment at P-canaliculata_contig101148:845..1012- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig101148.202.1 ID=mRNA_P-canaliculata_contig101148.202.1|Name=mRNA_P-canaliculata_contig101148.202.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=168bp|location=Sequence derived from alignment at P-canaliculata_contig101148:845..1012- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig101148:845..1012- >mRNA_P-canaliculata_contig101148.202.1 ID=mRNA_P-canaliculata_contig101148.202.1|Name=mRNA_P-canaliculata_contig101148.202.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at P-canaliculata_contig101148:845..1012- (Pelvetia canaliculata dioecious)back to top |