Homology
BLAST of mRNA_P-canaliculata_contig101101.199.1 vs. uniprot
Match:
A0A6V1P6C6_HETAK (Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P6C6_HETAK)
HSP 1 Score: 250 bits (639), Expect = 1.860e-83
Identity = 135/137 (98.54%), Postives = 137/137 (100.00%), Query Frame = 1
Query: 52 TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 462
TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLR+QGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct: 6 TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRYQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 142
BLAST of mRNA_P-canaliculata_contig101101.199.1 vs. uniprot
Match:
W4GZ05_9STRA (Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ05_9STRA)
HSP 1 Score: 250 bits (638), Expect = 2.160e-83
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1
Query: 55 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 462
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
BLAST of mRNA_P-canaliculata_contig101101.199.1 vs. uniprot
Match:
A0A1Z5K8H0_FISSO (Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A1Z5K8H0_FISSO)
HSP 1 Score: 248 bits (634), Expect = 8.800e-83
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 1
Query: 55 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 462
MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
BLAST of mRNA_P-canaliculata_contig101101.199.1 vs. uniprot
Match:
A0A7S1BJN3_9STRA (Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A7S1BJN3_9STRA)
HSP 1 Score: 249 bits (635), Expect = 9.920e-83
Identity = 134/136 (98.53%), Postives = 136/136 (100.00%), Query Frame = 1
Query: 55 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 462
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct: 15 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 150
BLAST of mRNA_P-canaliculata_contig101101.199.1 vs. uniprot
Match:
K0S7I6_THAOC (Histone domain-containing protein n=8 Tax=Bacillariophyta TaxID=2836 RepID=K0S7I6_THAOC)
HSP 1 Score: 251 bits (640), Expect = 1.250e-82
Identity = 136/138 (98.55%), Postives = 137/138 (99.28%), Query Frame = 1
Query: 49 VTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 462
V MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct: 72 VKMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 209
BLAST of mRNA_P-canaliculata_contig101101.199.1 vs. uniprot
Match:
A0A3Q3G4G3_KRYMA (Histone H3 n=4 Tax=Clupeocephala TaxID=186625 RepID=A0A3Q3G4G3_KRYMA)
HSP 1 Score: 248 bits (632), Expect = 2.170e-82
Identity = 133/138 (96.38%), Postives = 137/138 (99.28%), Query Frame = 1
Query: 49 VTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 462
VTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct: 5 VTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 142
BLAST of mRNA_P-canaliculata_contig101101.199.1 vs. uniprot
Match:
D7G4I9_ECTSI (Similar to histone H3.2 n=2 Tax=PX clade TaxID=569578 RepID=D7G4I9_ECTSI)
HSP 1 Score: 246 bits (629), Expect = 5.090e-82
Identity = 134/136 (98.53%), Postives = 135/136 (99.26%), Query Frame = 1
Query: 55 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 462
MARTKQTARKSTG +APRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct: 1 MARTKQTARKSTGRQAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
BLAST of mRNA_P-canaliculata_contig101101.199.1 vs. uniprot
Match:
A0A3B5KKG2_TAKRU (Histone H3 n=6 Tax=Bilateria TaxID=33213 RepID=A0A3B5KKG2_TAKRU)
HSP 1 Score: 246 bits (629), Expect = 5.630e-82
Identity = 132/138 (95.65%), Postives = 137/138 (99.28%), Query Frame = 1
Query: 49 VTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 462
+TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct: 2 LTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 139
BLAST of mRNA_P-canaliculata_contig101101.199.1 vs. uniprot
Match:
A0A0N5D645_THECL (Histone domain-containing protein n=2 Tax=Eukaryota TaxID=2759 RepID=A0A0N5D645_THECL)
HSP 1 Score: 247 bits (631), Expect = 6.250e-82
Identity = 134/141 (95.04%), Postives = 137/141 (97.16%), Query Frame = 1
Query: 40 LANVTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 462
L N MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAVLALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct: 23 LTNCGMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 163
BLAST of mRNA_P-canaliculata_contig101101.199.1 vs. uniprot
Match:
A0A5N4CQB1_CAMDR (Histone H3 n=12 Tax=Eutheria TaxID=9347 RepID=A0A5N4CQB1_CAMDR)
HSP 1 Score: 246 bits (629), Expect = 7.120e-82
Identity = 133/142 (93.66%), Postives = 137/142 (96.48%), Query Frame = 1
Query: 37 VLANVTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 462
+ AN MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SAV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct: 5 IKANQLMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 146
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101101.199.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 1.86e-83 / Id = 98.54 Expect = 2.16e-83 / Id = 99.26 Expect = 8.80e-83 / Id = 98.53 Expect = 9.92e-83 / Id = 98.53 Expect = 1.25e-82 / Id = 98.55 Expect = 2.17e-82 / Id = 96.38 Expect = 5.09e-82 / Id = 98.53 Expect = 5.63e-82 / Id = 95.65 Expect = 6.25e-82 / Id = 95.04 Expect = 7.12e-82 / Id = 93.66 Sequence A0A6V1P6C6_HETAK W4GZ05_9STRA A0A1Z5K8H0_FISSO A0A7S1BJN3_9STRA K0S7I6_THAOC A0A3Q3G4G3_KRYMA D7G4I9_ECTSI A0A3B5KKG2_TAKRU A0A0N5D645_THECL A0A5N4CQB1_CAMDR Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 255.8 Seed ortholog evalue 1.3e-65 Seed eggNOG ortholog 2880.D7FWI7 KEGG ko ko:K11253 KEGG Pathway ko05034,ko05202,ko05322,map05034,map05202,map05322 GOs GO:0000785,GO:0000786,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044815,GO:0044877,GO:0051276,GO:0065003,GO:0065004,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363 EggNOG free text desc. protein heterodimerization activity EggNOG OGs COG2036@1,KOG1745@2759 COG Functional cat. B Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko00001,ko03036,ko04147 Hectar predicted targeting category signal peptide Exons 1 Model size 465 Cds size 465 Stop 1 Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815584.7904575-CDS-P-canaliculata_contig101101:244..709 1622815584.7904575-CDS-P-canaliculata_contig101101:244..709 Pelvetia canaliculata dioecious CDS P-canaliculata_contig101101 245..709 + 1693494151.1091397-CDS-P-canaliculata_contig101101:244..709 1693494151.1091397-CDS-P-canaliculata_contig101101:244..709 Pelvetia canaliculata dioecious CDS P-canaliculata_contig101101 245..709 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig101101.199.1
>prot_P-canaliculata_contig101101.199.1 ID=prot_P-canaliculata_contig101101.199.1|Name=mRNA_P-canaliculata_contig101101.199.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=155bp
SSLISLIQAAFTVLANVTMARTKQTARKSTGGKAPRKQLATKAARKSAPA back to top mRNA from alignment at P-canaliculata_contig101101:245..709+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101101.199.1 ID=mRNA_P-canaliculata_contig101101.199.1|Name=mRNA_P-canaliculata_contig101101.199.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=465bp|location=Sequence derived from alignment at P-canaliculata_contig101101:245..709+ (Pelvetia canaliculata dioecious)AGCTCATTAATTTCCCTCATTCAGGCTGCATTTACAGTATTAGCAAACGT
TACCATGGCTCGCACCAAGCAGACCGCTCGTAAATCTACCGGAGGAAAGG
CCCCGCGAAAGCAGCTGGCCACCAAGGCTGCCCGTAAATCTGCGCCAGCC
ACTGGTGGTGTGAAGAAGCCTCACCGCTACAGGCCGGGCACAGTCGCCCT
TCGCGAGATCCGGCGTTACCAAAAGTCGACCGAGCTTCTTATCCGTAAGC
TACCCTTCCAGCGTCTGGTGCGCGAGATCGCACAGGATTTCAAAAGTGAT
CTTCGCTTCCAAGGCTCTGCCGTATTGGCTCTTCAGGAGGCCGCTGAGGC
ATACCTTGTAGGTCTATTTGAAGATACAAACCTGTGTGCCATCCACGCCA
AACGTGTCACCATCATGCCTAAAGACATTCAGCTGGCGAGGCGTATCCGC
GGAGAGCGCTCGTAA back to top Coding sequence (CDS) from alignment at P-canaliculata_contig101101:245..709+
>mRNA_P-canaliculata_contig101101.199.1 ID=mRNA_P-canaliculata_contig101101.199.1|Name=mRNA_P-canaliculata_contig101101.199.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=930bp|location=Sequence derived from alignment at P-canaliculata_contig101101:245..709+ (Pelvetia canaliculata dioecious) back to top