mRNA_P-canaliculata_contig10110.198.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10110.198.1
Unique NamemRNA_P-canaliculata_contig10110.198.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig10110.198.1 vs. uniprot
Match: A0A6H5JA60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA60_9PHAE)

HSP 1 Score: 279 bits (714), Expect = 5.680e-84
Identity = 161/377 (42.71%), Postives = 222/377 (58.89%), Query Frame = 1 
Query:    4 NTDFLDASGSTCDEVWMSWPSTQLQAMTNGTYFVYKLFNSVGNLFLALNRMLPVLRFLEMGIVLDSQKSFPGFRQAFEPGVIMWEIDLAPLKQRALEIEQGGNINGFHALTLVDGLIVLSDAQLELIISTMGISASSLSELVSIALRPERHPRLRSLFSKIHSSIGGQRRARPEPCTWNMFLRRSPFLLESLELHSPWLSRNGGLVPERRPAKYVGWHIRTPGGESNASYVPAVHRYIIQ-ESPEVVCPAFESATQVARTSCQEFATHD---MAVYISSNSKSLARSCIEALAEHETQGGQVDLGLGPQDAHTRFSLNPNAS-MNAFLDYVFLLDATAIIRSGSSFSGTIVTMRGFVCQPTR-VTELPERQLLACAP 1116
            N  F+  +G  C  +W SWP+ Q  A+ NGT  V+ +F SVGNLF+ L  ++   R LE+ + L   K FPGFR AF+   I W++D   + Q+A E+  G  ++  + L   DG +VLS  QLE +    GI  +SL+E+ ++A++ ER   LR    ++  +I G     PE C WNM LRRSP ++ SLE H+PW     G  P  RP  YV WH+RT  GES  S+ P VH YI+  +S   V P F SAT  A   C +    D   M VYISSNSKS+AR+C    AEH+   G VDLG+   DAHT FS NPNA+ +NAF+DY++L+D++ II++GSSFS T+  ++   C+      ELP ++L  C P
Sbjct:  183 NDRFVHTTGDDCHPLWTSWPAVQEAAIANGTVLVFDIFPSVGNLFITLGNLIKTARLLEVALFLKWDK-FPGFRAAFDTASIKWDLDPTTVVQKAEELTLGAEVDRLYPLKFSDGNLVLSSQQLEALAIQTGIPDTSLAEM-AVAVK-ERWSSLR----RLSQAIAGSAVVPPETCAWNMLLRRSPSMIASLEAHNPWTP--SGFGP--RPKDYVAWHVRTSDGESEHSFNPDVHTYILHGQSSTTVVPIFLSATDAAEKMCPKMFHEDAPKMPVYISSNSKSMARNCTALAAEHDVTAGFVDLGIDDLDAHTTFSKNPNATALNAFIDYLYLMDSSVIIQTGSSFSSTVARVKSLKCREVEHPPELPVKRLNVCLP 548
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BLAST of mRNA_P-canaliculata_contig10110.198.1 vs. uniprot
Match: A0A6H5L1Z7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z7_9PHAE)

HSP 1 Score: 263 bits (671), Expect = 9.160e-80
Identity = 152/377 (40.32%), Postives = 217/377 (57.56%), Query Frame = 1 
Query:   16 LDASGSTCDEVWMSWPSTQLQAMTNGTYFVYKLFNSVGNLFLALNRMLPVLRFLEMGIVLDSQKSFPGFRQAFEPGVIMWEIDLAPLKQRALEIEQGGNINGFHALTLVDGLIVLSDAQLELIISTMGISASSLSELVSIALRPERHPRLRSLFSKIHSSIGGQRRARPEPCTWNMFLRRSPFLLESLELHSPWLSRNGGLVPERRPAKYVGWHIRTPGGESNASYVPAVHRYII-QESPEVVCPAFESATQVARTSCQEFATHDMA---VYISSNSKSLARSCI----EALAEHETQGGQVDLGLGPQDAHTRFSLNPNAS-MNAFLDYVFLLDATAIIRSGSSFSGTIVTMRGFVCQPTRVTE-LPERQLLACAP 1116
            +  +   CD  W SWPS Q  A+  GT  V+ +F SVGN+F+ L+ ++   R LE+ ++L+ Q+ F GFR+AF+P  I W++D   L Q+A    QG      +  T  DG +VLS  QLE I   +G+  +S+ E+   A   E + ++  L      ++  +R +   PC WNM LRRSP ++ SLE H+PW++         RP KYV WHIRT  GE+N S+ P VH YI  ++S   V P F SAT  A   C  F   D+    VYISSNSK++AR+C        AEH+   G VDLG+   DAHT FS NP A+ +NAF+DY++L+D++ I+++GSSFS T+ +++G  C      E LP + L  C P
Sbjct:    1 MSTTDDDCDSTWSSWPSVQEAAVARGTVVVFNVFPSVGNMFVILHNIIKTARLLEVALLLNWQR-FEGFREAFDPASIKWDLDQPTLVQQAAPRSQGAEAERLYPFTFPDGQMVLSHWQLETIARKVGLPGTSVDEMA--AALEEGYSKIGGLGRLSRETVQNERFS-VLPCAWNMLLRRSPAMMASLEAHNPWMTHEFN----PRPKKYVAWHIRTSHGETNGSFTPHVHTYIFHRQSSTSVLPIFLSATDAAERMCPRFFDQDVPITPVYISSNSKTMARNCTVLAATLAAEHKVGPGFVDLGIDDVDAHTTFSKNPKATALNAFIDYLYLMDSSIIVQTGSSFSFTVASIKGMSCHGVAKPEGLPVKNLNVCLP 369
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BLAST of mRNA_P-canaliculata_contig10110.198.1 vs. uniprot
Match: A0A6H5JS37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS37_9PHAE)

HSP 1 Score: 244 bits (622), Expect = 3.900e-70
Identity = 143/370 (38.65%), Postives = 215/370 (58.11%), Query Frame = 1 
Query:   31 STCDEVWMSWPSTQLQAMTNGTYFVYKLFNSVGNLFLALNRMLPVLRFLEMGIVLDSQKSFPGFRQAFEPGVIMWEIDLAPLKQRALEIEQGGNINGFHALTLVDGLIVLSDAQLELIISTMGISASSLSELVSIALRPERHPRLRSLFSKIHSSIGGQRRARP--EPCTWNMFLRRSPFLLESLELHSPWLSRNGGLVPERRPAKYVGWHIRTPGGESNASYVPAVHRYIIQE-SPEVVCPAFESATQVARTSCQEFATHD---MAVYISSNSKSLARSCIEALAEHETQGGQVDLGLGPQDAHTRFSLNPN-ASMNAFLDYVFLLDATAIIRSGSSFSGTIVTMRGFVCQPTRVT-ELPERQLLACAP 1116
            S CDE+W +WP+ Q  A+ NGT  V+ L + VGN F+ L  ++ V R+LE+G+V++  K F GFR AF+ G + W+ID  P ++RA EI +G N +GFH     DG +VL D QL ++ S +GI+     + + + L+     ++R   S      GG +   P  +PCTWNMF+RRS  ++  LE ++PW      +    R  KY+ + IRT  GE+  S+ P +H YI       VVC  + +AT+ A+ +C      D   + ++ISSNS S+AR+C    A  +   G VD+G+   DAHT FS +P  A++ AF+D++F+LDA  ++R+ SSFSGT V M+G  C   +V+ E+P   L  C P
Sbjct:  221 SECDELWRTWPAMQESAIANGTVVVFDLVSRVGNAFMDLRNIIQVARWLELGLVIN-WKGFQGFRDAFDTGELKWDIDTEPFRRRAKEISRGVNPSGFHLFRFYDGFMVLCDHQLTMLASKVGIAIQH-PDAMMLQLKKVFPVKIRYWIS------GGLQNGLPASQPCTWNMFVRRSAAMMRRLEAYNPWRVEGSSMS---RFQKYIAFQIRTTEGETAGSFDPKIHTYIFNNLRSTVVCNWYFAATEEAKGACPAAFNADEGDVPLFISSNSMSMARNCSAEAAGRKMLPGLVDVGVPVGDAHTTFSAHPKIAALKAFVDFLFILDAEVVVRTASSFSGTAVEMKGMNCFEAKVSVEMPISGLYVCVP 579
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BLAST of mRNA_P-canaliculata_contig10110.198.1 vs. uniprot
Match: A0A6H5KDJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ4_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 7.550e-60
Identity = 119/318 (37.42%), Postives = 181/318 (56.92%), Query Frame = 1 
Query:  175 LEMGIVLDSQKSFPGFRQAFEPGVIMWEIDLAPLKQRALEIEQGGNINGFHALTLVDGLIVLSDAQLELIISTMGISASSLSELVSIALRPERHPRLRSLFSKIHSSIGGQRRARPEPCTWNMFLRRSPFLLESLELHSPWLSRNGGLVPERRPAKYVGWHIRTPGGESNASYVPAVHRYIIQE-SPEVVCPAFESATQVARTSC-QEFATHDMAVYISSNSKSLARSCIEALAEHETQGGQVDLGLGPQDAHTRFSLNPNASMNAFLDYVFLLDATAIIRSGSSFSGTIVTMRGFVCQPTRVTELP--ERQLLACAP 1116
            LE+ ++++  + FP FR AFEP VI W++D  P K R  EI +G +    HAL  +DG +++SD QLE++ ++ G+ + + S  +    R     R R   +  +  +         PC WNM LRRSP ++ S+E H+PW++   G  P R  A Y  WHIRT  GE+  S+  +  RYI    + + +CP F S  + +  +C   F+ +D  VYISSNSKS AR+C     + + +   VDLG+  QDAHT FS NP+  +NAF+D+++L+DA  I+R+ SSFSG I+ ++ + C    + +LP     L  C P
Sbjct:    2 LEVALIINLDQ-FPAFRVAFEPEVIKWDLDTEPFKLRGGEISKGVDAEDRHALQFLDGFLIVSDHQLEVMSASFGVGSGTHSG-IKAGFRKAFKNRWRHYLATANLDLA-------PPCAWNMVLRRSPTMMNSMEAHTPWVT--AGDSP-RAHAHYHAWHIRTSEGETERSF--SKQRYIFNNVASQSICPMFVSTREASEEACPSRFSGNDSPVYISSNSKSTARNCSAEARKKDIETAFVDLGINAQDAHTAFSKNPDTVVNAFIDFLYLMDADIIVRTASSFSGAIIDIKSYRCMDAYLGKLPVFRMHLFVCVP 305
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BLAST of mRNA_P-canaliculata_contig10110.198.1 vs. uniprot
Match: A0A6H5JUR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUR5_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 9.760e-45
Identity = 89/207 (43.00%), Postives = 131/207 (63.29%), Query Frame = 1 
Query:  523 EPCTWNMFLRRSPFLLESLELHSPWLSRNGGLVPERRPAKYVGWHIRTPGGESNASYVPAVHRYIIQ-ESPEVVCPAFESATQVARTSCQEFATHD----MAVYISSNSKSLARSCIEALAEHETQGGQVDLGLGPQDAHTRFSLNPNAS-MNAFLDYVFLLDATAIIRSGSSFSGTIVTMRGFVCQPTRVTE-LPERQLLACAPKN 1122
            + C WNM LRRS  ++ SL+ ++PW     G     RPA+YV WHIRT  GE+  S+ P VH+YI   ++   V P F SAT  A  +C +   HD    M VYISSNSK+++R+C    AE++ Q G VDLG+   DAHT +S NP+A+ +NAF+DY++L+D++ I+++GSSF+ T+ +++G  C+    T+  P R L  C P +
Sbjct:   17 QACAWNMLLRRSHSIMASLDANNPWTPAGFG----SRPAEYVAWHIRTSNGETKESFSPDVHQYIFNGQTSAAVFPLFLSATSFAEKACPKL-YHDNIPIMPVYISSNSKTMSRNCTALAAENKIQSGFVDLGIADSDAHTGYSANPDATALNAFIDYLYLMDSSIIVQTGSSFAFTVASIKGTSCRGAPKTKGAPVRSLYICLPND 218
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BLAST of mRNA_P-canaliculata_contig10110.198.1 vs. uniprot
Match: D8LBV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV4_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 4.120e-43
Identity = 108/284 (38.03%), Postives = 159/284 (55.99%), Query Frame = 1 
Query:   31 STCDEVWMSWPSTQLQAMTNGTYFVYKLFNSVGNLFLALNRMLPVLRFLEMGIVLDSQKSFPGFRQAFEPGVIMWEIDLAPLKQRALEIEQGGNINGFHALTLVDGLIVLSDAQLELIISTMGISASSLSELVSIALRPERHPRLRSLFS-KIHSSIGGQRR---ARPEPCTWNMFLRRSPFLLESLELHSPWLSRNGGLVPERRPAKYVGWHIRTPGGESNASYVPAVHRYIIQE-SPEVVCPAFESATQVARTSCQEFATHD---MAVYISSNSKSLAR-SC 855
            S CDE+W +WP+ Q  A+ NGT  V+ L + VGN F+ L  ++ V R+LE+G+V++  K F GFR AF+ G + W+ID  P ++RA  I +G N +GFH     DG +VL D QL ++ S MGI+      +V          +L+ +F  KI   I G+ +      +PCTWNMF++RS  ++ SLE+++PW      +    R  KYV + IRT  GE+  S+ P +H YI       VVC  + +AT+ A+  C      D   + ++ISSNS  L R SC
Sbjct:  221 SECDELWRTWPAMQESAIANGTVVVFDLVSRVGNAFMDLRNIIQVARWLELGLVVN-WKGFQGFRDAFDTGELKWDIDTEPFRRRAKAISRGVNPSGFHLFWFYDGFMVLCDHQLTMLASKMGIAIQHPDAMVL---------QLKKVFPVKIRYWISGRLQNGLPASQPCTWNMFVKRSASMMRSLEVYNPWRVEGSSMS---RFQKYVAFQIRTTEGETAGSFDPKIHTYIFNNLRSTVVCNWYFTATEEAKGVCPAAFNADEGDVPLFISSNSIVLLRHSC 491
[Close]
BLAST of mRNA_P-canaliculata_contig10110.198.1 vs. uniprot
Match: A0A6H5JBZ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBZ2_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 6.350e-20
Identity = 47/102 (46.08%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:  817 YISSNSKSLARSCIEALAEHETQGGQVDLGLGPQDAHTRFSLNPNAS-MNAFLDYVFLLDATAIIRSGSSFSGTIVTMRGFVCQPTR-VTELPERQLLACAP 1116
            +  S SKS+AR+C    AEH+   G VDLG+   DAHT FS NPNA+ +NAF+DY++L+D++ II++GSSFS T+  ++   C+      ELP ++L  C P
Sbjct:    5 FFRSRSKSMARNCTALAAEHDVTAGFVDLGIDDLDAHTTFSKNPNATALNAFIDYLYLMDSSVIIQTGSSFSSTVARVKSLKCREVEHPPELPVKRLNVCLP 106
[Close]
BLAST of mRNA_P-canaliculata_contig10110.198.1 vs. uniprot
Match: D7G5J4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5J4_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 1.200e-13
Identity = 45/104 (43.27%), Postives = 60/104 (57.69%), Query Frame = 1 
Query:  526 PCTWNMFLRRSPFLLESLELHSPWLSRNGGLVPERRPAKYVGWHIRTPGGESNASYVPAVHRYIIQE-SPEVVCPAFESATQVARTSC-QEFATHDMAVYISSN 831
            PC WNM LRRSP ++ S+E H+PW++   G  P  R A Y  WHIRT  GE+  S+  +  RYI    + E +CP F S  + +  +C   F+  D  VYISSN
Sbjct:   41 PCAWNMVLRRSPTMMNSMEAHTPWVTV--GDSPRTR-AHYHAWHIRTSEGETERSF--SKQRYIFNNVASESICPMFVSTREASEEACPSRFSGKDSPVYISSN 139
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10110.198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JA60_9PHAE5.680e-8442.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1Z7_9PHAE9.160e-8040.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS37_9PHAE3.900e-7038.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDJ4_9PHAE7.550e-6037.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUR5_9PHAE9.760e-4543.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBV4_ECTSI4.120e-4338.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBZ2_9PHAE6.350e-2046.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5J4_ECTSI1.200e-1343.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10110contigP-canaliculata_contig10110:5647..8934 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1544
Cds size1083
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815584.6793187-UTR-P-canaliculata_contig10110:5646..60561622815584.6793187-UTR-P-canaliculata_contig10110:5646..6056Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10110 5647..6056 -
1693494151.0433471-UTR-P-canaliculata_contig10110:5646..60561693494151.0433471-UTR-P-canaliculata_contig10110:5646..6056Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10110 5647..6056 -
1622815584.7530231-UTR-P-canaliculata_contig10110:8883..89341622815584.7530231-UTR-P-canaliculata_contig10110:8883..8934Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10110 8884..8934 -
1693494151.094715-UTR-P-canaliculata_contig10110:8883..89341693494151.094715-UTR-P-canaliculata_contig10110:8883..8934Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10110 8884..8934 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815584.6922772-CDS-P-canaliculata_contig10110:6056..63571622815584.6922772-CDS-P-canaliculata_contig10110:6056..6357Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10110 6057..6357 -
1693494151.055366-CDS-P-canaliculata_contig10110:6056..63571693494151.055366-CDS-P-canaliculata_contig10110:6056..6357Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10110 6057..6357 -
1622815584.7083185-CDS-P-canaliculata_contig10110:6635..69111622815584.7083185-CDS-P-canaliculata_contig10110:6635..6911Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10110 6636..6911 -
1693494151.0636828-CDS-P-canaliculata_contig10110:6635..69111693494151.0636828-CDS-P-canaliculata_contig10110:6635..6911Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10110 6636..6911 -
1622815584.721032-CDS-P-canaliculata_contig10110:7245..74981622815584.721032-CDS-P-canaliculata_contig10110:7245..7498Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10110 7246..7498 -
1693494151.071805-CDS-P-canaliculata_contig10110:7245..74981693494151.071805-CDS-P-canaliculata_contig10110:7245..7498Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10110 7246..7498 -
1622815584.7307873-CDS-P-canaliculata_contig10110:8001..81431622815584.7307873-CDS-P-canaliculata_contig10110:8001..8143Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10110 8002..8143 -
1693494151.0794165-CDS-P-canaliculata_contig10110:8001..81431693494151.0794165-CDS-P-canaliculata_contig10110:8001..8143Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10110 8002..8143 -
1622815584.7412841-CDS-P-canaliculata_contig10110:8772..88831622815584.7412841-CDS-P-canaliculata_contig10110:8772..8883Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10110 8773..8883 -
1693494151.0870829-CDS-P-canaliculata_contig10110:8772..88831693494151.0870829-CDS-P-canaliculata_contig10110:8772..8883Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10110 8773..8883 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10110.198.1prot_P-canaliculata_contig10110.198.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10110 6057..8883 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10110.198.1

>prot_P-canaliculata_contig10110.198.1 ID=prot_P-canaliculata_contig10110.198.1|Name=mRNA_P-canaliculata_contig10110.198.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=361bp
MSWPSTQLQAMTNGTYFVYKLFNSVGNLFLALNRMLPVLRFLEMGIVLDS
QKSFPGFRQAFEPGVIMWEIDLAPLKQRALEIEQGGNINGFHALTLVDGL
IVLSDAQLELIISTMGISASSLSELVSIALRPERHPRLRSLFSKIHSSIG
GQRRARPEPCTWNMFLRRSPFLLESLELHSPWLSRNGGLVPERRPAKYVG
WHIRTPGGESNASYVPAVHRYIIQESPEVVCPAFESATQVARTSCQEFAT
HDMAVYISSNSKSLARSCIEALAEHETQGGQVDLGLGPQDAHTRFSLNPN
ASMNAFLDYVFLLDATAIIRSGSSFSGTIVTMRGFVCQPTRVTELPERQL
LACAPKNSSC*
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mRNA from alignment at P-canaliculata_contig10110:5647..8934-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10110.198.1 ID=mRNA_P-canaliculata_contig10110.198.1|Name=mRNA_P-canaliculata_contig10110.198.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=3288bp|location=Sequence derived from alignment at P-canaliculata_contig10110:5647..8934- (Pelvetia canaliculata dioecious)
AGGAACACTGACTTTCTTGACGCTTCGGGCAGCACATGCGATGAGGTCTG
GATGAGCTGGCCTTCGACCCAGCTACAAGCGATGACGAACGGGACATACT
TCGTGTACAAGCTTTTCAATTCCGTGGGCAACCTTTTCCTTGCTTTGAAC
AGAATGTTGCCGGTGAGTTTAACCTTCCCTTGACCGCAACTACGCGAGTT
TAAAGAATTGCATGAATTTAGTGTTAACCAAGATAATATGCCGCCCCTGA
CCTTCTATCATCATTAGTACCTCGACTTGTTCTATCAACTCGTCAATGTA
GAGTCTCTAGTAAAACTTTAGTCGGTAGGTTACGGAGACTGGCGGGTCGT
TTGTCGAGGGGGGGGGTGGCTAAAGTACTATACGTCATGCGTAGCCCTCA
CGTAATGTGAATTGACTTTTACCTCTTTCAGGTAGTATCCCACCCTCGGG
CTATACCACCATCGAATTTGAAGTTGGTATTCAAATCCGAATGTTTTTTT
GATACTCATCATTGCCTACAGAACGTCATAATCTTGAGCCGAGACTGTTT
AGCGTATCTCTAAACGTGGATGAGTGAAAAAGCGGCTAATCGAAATTATA
CATGGTTCAACATTTCTATTACAACAGTTGTAGTGAAAGTCATACCAGGT
GTCGTTCCAACCCGTTTGATGGTCAACACCAGCAACAGCCCCCCACTCCT
TCCGGAACGGTTTTGACCCAGGGCAAGGGGGAACACTACCTGTGGAAATG
AGCCCCCTTTTTCTCTGCGGCGTCATATTTCTTCCGTTCAGGTCCTTCGT
TTCCTCGAAATGGGCATTGTCTTGGACTCGCAAAAGAGTTTCCCCGGATT
CAGACAGGCATTTGAGCCAGGCGTGATCATGTGGGAAATCGACCTTGCGC
CGTTGAAGCAGAGAGCTCTCGAGATCGAACAAGGTACGAACCTTAATGAA
ACCCTTTACAAGGAGGACATGGCTCACCAAGTACGCGTGCAGGTGAAACG
TTCTGTATCACGCGCCAAACTAATCGATGGCCCATGGCCCAGTGCAGAAA
GTAGTTGTTTTCGACGTCTATTTCTCTGGTAGTAGGTGAAGATTCGTTGT
TTGTTGTTGGGATCCCACTGGATCTATTGTATTTCATTATTTAAGTACAG
CTTTGACCAAGGCTTCGGCTATGGCTTGGGAACATGACCCCCTGACGTTC
GGGCAACTAGATTTGTCGTTATACTTTCTTTTCTCTATGGATATTTAAGA
CTTAATTATGCTGTGCGAACCGCTGCAACGAACGCGCCATCCACGGGCAA
AAATCGGTGTGAGTTCGATGGGATGCTGAGCTGACGTTTTCGTACTACAC
TATAATAGTAATTTTCTCTTTAAGAACAAGAATTGTGCAGCATACTCGTT
CAAATTATGCCTGCATCCCGCTTGTGGCACTTCTAGGCGGAAATATCAAC
GGCTTTCATGCGCTCACTTTGGTCGATGGCCTGATTGTACTCTCCGACGC
CCAGCTAGAGCTGATTATCTCGACCATGGGCATCTCTGCAAGCTCCTTGT
CCGAGTTGGTCTCGATCGCTTTGCGGCCAGAACGACATCCACGTTTAAGG
AGCTTGTTCTCAAAAATCCATTCAAGTATTGGTGGCCAAAGACGCGCCCG
CCCCGAGCCCTGTACATGGAACATGTTTCTCAGGAGAAGGTACAATAGGA
GGAGCTGCAGTACACGTTGTATTATCGCCTTTTTACCCAACTGATATAAA
AGCTTGATGGACTAAGAGCTTTTGTGTAACCGATTGCAAGAGATTCGAAT
ACGATGTGGTGCGTACCTGTATACACCCGTATTGATTGATTGATTGATTG
AATTCTCACATAAGCTGATGTCAAAAATCCAGCCCGTGGTCACAAGGTAG
TTATCGTCCACCCACTGTATACCAAGCGCCGGCAAATTCCTGCGATTAGA
GCTACTCGCTAAGTCCACCCCCCAGACCTTGACGCGACATTCTCCGGATT
GATCTCGCTCCTGTGTACATCAGCCCTTTCCTTCTGGAAAGCTTAGAACT
CCACTCTCCGTGGTTGTCGAGGAATGGTGGACTTGTACCGGAAAGGCGCC
CCGCTAAGTACGTGGGGTGGCATATTCGAACACCTGGAGGAGAATCCAAC
GCCTCCTACGTGCCGGCTGTTCACCGTTATATCATTCAAGAATCACCTGA
GGTGGTATGTCCAGCTTTCGAATCAGCGACACAAGTCGCGAGAACTTCTT
GTCAGGAATTTGCTACCCACGATATGGCAGTCTACATTTCTTCCAACAGG
TAAGCACTGTAACACCGCATGACTACCCAAATGAACCTAAGCAGTTCCTG
AACACGAAACACGCTGAAACCAAATAGGAAACTCATATTCACTCGGCCAC
GGGCAATCTCTTTGGTAGAGCTTTAAATCGGGAAACACTGAGATAACATC
GAGACTTTGCATCAATTTGCCACGTAAAAAGAATGGTGGCTAATCCCTCC
GTCGTTGCAAAACTGTCTTTGAGCTCAAATCACGCAGCATTACGTACGTC
CCTCCGTATGCCCCTGCGCCCCTCCAGCAAGAGTCTTGCACGCAGTTGCA
TCGAAGCCTTAGCGGAGCACGAAACTCAGGGAGGTCAGGTGGACTTGGGT
CTGGGACCCCAAGATGCCCACACCCGATTTAGCCTTAATCCCAACGCCAG
CATGAATGCATTTCTTGATTATGTGTTCCTATTGGACGCCACGGCCATCA
TACGCTCGGGATCCTCGTTTTCCGGAACGATCGTGACCATGAGAGGCTTT
GTGTGTCAGCCCACGCGCGTCACCGAGCTGCCAGAGCGGCAGCTTCTTGC
GTGTGCTCCAAAGAACTCATCGTGCTGAAAATCAATTACTATACGAGTAA
AGGTCTTACATAAAGGATCTGCCGACTCCTATTATCCACTTCGTTTGATA
TGGAAATCCTAAAGAAAAACGAAGTTTGATGGGGGACAAATGTCGGAGAT
GTTTCAGGAAAAGATGGGGACATCAACTCGGATCCATCTAGAACATCTCA
GTTTGAGCTGAGTGCCCAGCACAACAGTATAAATATTTCTGGTATTAAGG
GATATGTAGCTTATCATCGGTCAAAGGATCATAATTCCCAATGCACCTCC
CCACTTTGTCTGAGTTCGTAGTTAACAAATGTGACTCTTTAGAGGCTGCA
CCAAGAAATGACTTTTATGAACAATATAGGAGGGGAAGGGCAATCGAGAC
GAATAGTGTAAAGGCGACTGTGTGCCCATCTCATGTAC
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Coding sequence (CDS) from alignment at P-canaliculata_contig10110:5647..8934-

>mRNA_P-canaliculata_contig10110.198.1 ID=mRNA_P-canaliculata_contig10110.198.1|Name=mRNA_P-canaliculata_contig10110.198.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2166bp|location=Sequence derived from alignment at P-canaliculata_contig10110:5647..8934- (Pelvetia canaliculata dioecious)
ATGAGCTGGCCTTCGACCCAGCTACAAGCGATGACGAACGGGACATACTT
CGTGTACAAGCTTTTCAATTCCGTGGGCAACCTTTTCCTTGCTTTGAACA
GAATGTTGCCGATGAGCTGGCCTTCGACCCAGCTACAAGCGATGACGAAC
GGGACATACTTCGTGTACAAGCTTTTCAATTCCGTGGGCAACCTTTTCCT
TGCTTTGAACAGAATGTTGCCGGTCCTTCGTTTCCTCGAAATGGGCATTG
TCTTGGACTCGCAAAAGAGTTTCCCCGGATTCAGACAGGCATTTGAGCCA
GGCGTGATCATGTGGGAAATCGACCTTGCGCCGTTGAAGCAGAGAGCTCT
CGAGATCGAACAAGGTCCTTCGTTTCCTCGAAATGGGCATTGTCTTGGAC
TCGCAAAAGAGTTTCCCCGGATTCAGACAGGCATTTGAGCCAGGCGTGAT
CATGTGGGAAATCGACCTTGCGCCGTTGAAGCAGAGAGCTCTCGAGATCG
AACAAGGCGGAAATATCAACGGCTTTCATGCGCTCACTTTGGTCGATGGC
CTGATTGTACTCTCCGACGCCCAGCTAGAGCTGATTATCTCGACCATGGG
CATCTCTGCAAGCTCCTTGTCCGAGTTGGTCTCGATCGCTTTGCGGCCAG
AACGACATCCACGTTTAAGGAGCTTGTTCTCAAAAATCCATTCAAGTATT
GGTGGCCAAAGACGCGCCCGCCCCGAGCCCTGTACATGGAACATGTTTCT
CAGGAGAAGGCGGAAATATCAACGGCTTTCATGCGCTCACTTTGGTCGAT
GGCCTGATTGTACTCTCCGACGCCCAGCTAGAGCTGATTATCTCGACCAT
GGGCATCTCTGCAAGCTCCTTGTCCGAGTTGGTCTCGATCGCTTTGCGGC
CAGAACGACATCCACGTTTAAGGAGCTTGTTCTCAAAAATCCATTCAAGT
ATTGGTGGCCAAAGACGCGCCCGCCCCGAGCCCTGTACATGGAACATGTT
TCTCAGGAGAAGCCCTTTCCTTCTGGAAAGCTTAGAACTCCACTCTCCGT
GGTTGTCGAGGAATGGTGGACTTGTACCGGAAAGGCGCCCCGCTAAGTAC
GTGGGGTGGCATATTCGAACACCTGGAGGAGAATCCAACGCCTCCTACGT
GCCGGCTGTTCACCGTTATATCATTCAAGAATCACCTGAGGTGGTATGTC
CAGCTTTCGAATCAGCGACACAAGTCGCGAGAACTTCTTGTCAGGAATTT
GCTACCCACGATATGGCAGTCTACATTTCTTCCAACAGCCCTTTCCTTCT
GGAAAGCTTAGAACTCCACTCTCCGTGGTTGTCGAGGAATGGTGGACTTG
TACCGGAAAGGCGCCCCGCTAAGTACGTGGGGTGGCATATTCGAACACCT
GGAGGAGAATCCAACGCCTCCTACGTGCCGGCTGTTCACCGTTATATCAT
TCAAGAATCACCTGAGGTGGTATGTCCAGCTTTCGAATCAGCGACACAAG
TCGCGAGAACTTCTTGTCAGGAATTTGCTACCCACGATATGGCAGTCTAC
ATTTCTTCCAACAGCAAGAGTCTTGCACGCAGTTGCATCGAAGCCTTAGC
GGAGCACGAAACTCAGGGAGGTCAGGTGGACTTGGGTCTGGGACCCCAAG
ATGCCCACACCCGATTTAGCCTTAATCCCAACGCCAGCATGAATGCATTT
CTTGATTATGTGTTCCTATTGGACGCCACGGCCATCATACGCTCGGGATC
CTCGTTTTCCGGAACGATCGTGACCATGAGAGGCTTTGTGTGTCAGCCCA
CGCGCGTCACCGAGCTGCCAGAGCGGCAGCTTCTTGCGTGTGCTCCAAAG
AACTCATCGTGCTGACAAGAGTCTTGCACGCAGTTGCATCGAAGCCTTAG
CGGAGCACGAAACTCAGGGAGGTCAGGTGGACTTGGGTCTGGGACCCCAA
GATGCCCACACCCGATTTAGCCTTAATCCCAACGCCAGCATGAATGCATT
TCTTGATTATGTGTTCCTATTGGACGCCACGGCCATCATACGCTCGGGAT
CCTCGTTTTCCGGAACGATCGTGACCATGAGAGGCTTTGTGTGTCAGCCC
ACGCGCGTCACCGAGCTGCCAGAGCGGCAGCTTCTTGCGTGTGCTCCAAA
GAACTCATCGTGCTGA
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