mRNA_P-canaliculata_contig10110.198.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig10110.198.1 vs. uniprot
Match: A0A6H5JA60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA60_9PHAE) HSP 1 Score: 279 bits (714), Expect = 5.680e-84 Identity = 161/377 (42.71%), Postives = 222/377 (58.89%), Query Frame = 1 Query: 4 NTDFLDASGSTCDEVWMSWPSTQLQAMTNGTYFVYKLFNSVGNLFLALNRMLPVLRFLEMGIVLDSQKSFPGFRQAFEPGVIMWEIDLAPLKQRALEIEQGGNINGFHALTLVDGLIVLSDAQLELIISTMGISASSLSELVSIALRPERHPRLRSLFSKIHSSIGGQRRARPEPCTWNMFLRRSPFLLESLELHSPWLSRNGGLVPERRPAKYVGWHIRTPGGESNASYVPAVHRYIIQ-ESPEVVCPAFESATQVARTSCQEFATHD---MAVYISSNSKSLARSCIEALAEHETQGGQVDLGLGPQDAHTRFSLNPNAS-MNAFLDYVFLLDATAIIRSGSSFSGTIVTMRGFVCQPTR-VTELPERQLLACAP 1116
N F+ +G C +W SWP+ Q A+ NGT V+ +F SVGNLF+ L ++ R LE+ + L K FPGFR AF+ I W++D + Q+A E+ G ++ + L DG +VLS QLE + GI +SL+E+ ++A++ ER LR ++ +I G PE C WNM LRRSP ++ SLE H+PW G P RP YV WH+RT GES S+ P VH YI+ +S V P F SAT A C + D M VYISSNSKS+AR+C AEH+ G VDLG+ DAHT FS NPNA+ +NAF+DY++L+D++ II++GSSFS T+ ++ C+ ELP ++L C P
Sbjct: 183 NDRFVHTTGDDCHPLWTSWPAVQEAAIANGTVLVFDIFPSVGNLFITLGNLIKTARLLEVALFLKWDK-FPGFRAAFDTASIKWDLDPTTVVQKAEELTLGAEVDRLYPLKFSDGNLVLSSQQLEALAIQTGIPDTSLAEM-AVAVK-ERWSSLR----RLSQAIAGSAVVPPETCAWNMLLRRSPSMIASLEAHNPWTP--SGFGP--RPKDYVAWHVRTSDGESEHSFNPDVHTYILHGQSSTTVVPIFLSATDAAEKMCPKMFHEDAPKMPVYISSNSKSMARNCTALAAEHDVTAGFVDLGIDDLDAHTTFSKNPNATALNAFIDYLYLMDSSVIIQTGSSFSSTVARVKSLKCREVEHPPELPVKRLNVCLP 548
BLAST of mRNA_P-canaliculata_contig10110.198.1 vs. uniprot
Match: A0A6H5L1Z7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z7_9PHAE) HSP 1 Score: 263 bits (671), Expect = 9.160e-80 Identity = 152/377 (40.32%), Postives = 217/377 (57.56%), Query Frame = 1 Query: 16 LDASGSTCDEVWMSWPSTQLQAMTNGTYFVYKLFNSVGNLFLALNRMLPVLRFLEMGIVLDSQKSFPGFRQAFEPGVIMWEIDLAPLKQRALEIEQGGNINGFHALTLVDGLIVLSDAQLELIISTMGISASSLSELVSIALRPERHPRLRSLFSKIHSSIGGQRRARPEPCTWNMFLRRSPFLLESLELHSPWLSRNGGLVPERRPAKYVGWHIRTPGGESNASYVPAVHRYII-QESPEVVCPAFESATQVARTSCQEFATHDMA---VYISSNSKSLARSCI----EALAEHETQGGQVDLGLGPQDAHTRFSLNPNAS-MNAFLDYVFLLDATAIIRSGSSFSGTIVTMRGFVCQPTRVTE-LPERQLLACAP 1116
+ + CD W SWPS Q A+ GT V+ +F SVGN+F+ L+ ++ R LE+ ++L+ Q+ F GFR+AF+P I W++D L Q+A QG + T DG +VLS QLE I +G+ +S+ E+ A E + ++ L ++ +R + PC WNM LRRSP ++ SLE H+PW++ RP KYV WHIRT GE+N S+ P VH YI ++S V P F SAT A C F D+ VYISSNSK++AR+C AEH+ G VDLG+ DAHT FS NP A+ +NAF+DY++L+D++ I+++GSSFS T+ +++G C E LP + L C P
Sbjct: 1 MSTTDDDCDSTWSSWPSVQEAAVARGTVVVFNVFPSVGNMFVILHNIIKTARLLEVALLLNWQR-FEGFREAFDPASIKWDLDQPTLVQQAAPRSQGAEAERLYPFTFPDGQMVLSHWQLETIARKVGLPGTSVDEMA--AALEEGYSKIGGLGRLSRETVQNERFS-VLPCAWNMLLRRSPAMMASLEAHNPWMTHEFN----PRPKKYVAWHIRTSHGETNGSFTPHVHTYIFHRQSSTSVLPIFLSATDAAERMCPRFFDQDVPITPVYISSNSKTMARNCTVLAATLAAEHKVGPGFVDLGIDDVDAHTTFSKNPKATALNAFIDYLYLMDSSIIVQTGSSFSFTVASIKGMSCHGVAKPEGLPVKNLNVCLP 369
BLAST of mRNA_P-canaliculata_contig10110.198.1 vs. uniprot
Match: A0A6H5JS37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS37_9PHAE) HSP 1 Score: 244 bits (622), Expect = 3.900e-70 Identity = 143/370 (38.65%), Postives = 215/370 (58.11%), Query Frame = 1 Query: 31 STCDEVWMSWPSTQLQAMTNGTYFVYKLFNSVGNLFLALNRMLPVLRFLEMGIVLDSQKSFPGFRQAFEPGVIMWEIDLAPLKQRALEIEQGGNINGFHALTLVDGLIVLSDAQLELIISTMGISASSLSELVSIALRPERHPRLRSLFSKIHSSIGGQRRARP--EPCTWNMFLRRSPFLLESLELHSPWLSRNGGLVPERRPAKYVGWHIRTPGGESNASYVPAVHRYIIQE-SPEVVCPAFESATQVARTSCQEFATHD---MAVYISSNSKSLARSCIEALAEHETQGGQVDLGLGPQDAHTRFSLNPN-ASMNAFLDYVFLLDATAIIRSGSSFSGTIVTMRGFVCQPTRVT-ELPERQLLACAP 1116
S CDE+W +WP+ Q A+ NGT V+ L + VGN F+ L ++ V R+LE+G+V++ K F GFR AF+ G + W+ID P ++RA EI +G N +GFH DG +VL D QL ++ S +GI+ + + + L+ ++R S GG + P +PCTWNMF+RRS ++ LE ++PW + R KY+ + IRT GE+ S+ P +H YI VVC + +AT+ A+ +C D + ++ISSNS S+AR+C A + G VD+G+ DAHT FS +P A++ AF+D++F+LDA ++R+ SSFSGT V M+G C +V+ E+P L C P
Sbjct: 221 SECDELWRTWPAMQESAIANGTVVVFDLVSRVGNAFMDLRNIIQVARWLELGLVIN-WKGFQGFRDAFDTGELKWDIDTEPFRRRAKEISRGVNPSGFHLFRFYDGFMVLCDHQLTMLASKVGIAIQH-PDAMMLQLKKVFPVKIRYWIS------GGLQNGLPASQPCTWNMFVRRSAAMMRRLEAYNPWRVEGSSMS---RFQKYIAFQIRTTEGETAGSFDPKIHTYIFNNLRSTVVCNWYFAATEEAKGACPAAFNADEGDVPLFISSNSMSMARNCSAEAAGRKMLPGLVDVGVPVGDAHTTFSAHPKIAALKAFVDFLFILDAEVVVRTASSFSGTAVEMKGMNCFEAKVSVEMPISGLYVCVP 579
BLAST of mRNA_P-canaliculata_contig10110.198.1 vs. uniprot
Match: A0A6H5KDJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ4_9PHAE) HSP 1 Score: 209 bits (531), Expect = 7.550e-60 Identity = 119/318 (37.42%), Postives = 181/318 (56.92%), Query Frame = 1 Query: 175 LEMGIVLDSQKSFPGFRQAFEPGVIMWEIDLAPLKQRALEIEQGGNINGFHALTLVDGLIVLSDAQLELIISTMGISASSLSELVSIALRPERHPRLRSLFSKIHSSIGGQRRARPEPCTWNMFLRRSPFLLESLELHSPWLSRNGGLVPERRPAKYVGWHIRTPGGESNASYVPAVHRYIIQE-SPEVVCPAFESATQVARTSC-QEFATHDMAVYISSNSKSLARSCIEALAEHETQGGQVDLGLGPQDAHTRFSLNPNASMNAFLDYVFLLDATAIIRSGSSFSGTIVTMRGFVCQPTRVTELP--ERQLLACAP 1116
LE+ ++++ + FP FR AFEP VI W++D P K R EI +G + HAL +DG +++SD QLE++ ++ G+ + + S + R R R + + + PC WNM LRRSP ++ S+E H+PW++ G P R A Y WHIRT GE+ S+ + RYI + + +CP F S + + +C F+ +D VYISSNSKS AR+C + + + VDLG+ QDAHT FS NP+ +NAF+D+++L+DA I+R+ SSFSG I+ ++ + C + +LP L C P
Sbjct: 2 LEVALIINLDQ-FPAFRVAFEPEVIKWDLDTEPFKLRGGEISKGVDAEDRHALQFLDGFLIVSDHQLEVMSASFGVGSGTHSG-IKAGFRKAFKNRWRHYLATANLDLA-------PPCAWNMVLRRSPTMMNSMEAHTPWVT--AGDSP-RAHAHYHAWHIRTSEGETERSF--SKQRYIFNNVASQSICPMFVSTREASEEACPSRFSGNDSPVYISSNSKSTARNCSAEARKKDIETAFVDLGINAQDAHTAFSKNPDTVVNAFIDFLYLMDADIIVRTASSFSGAIIDIKSYRCMDAYLGKLPVFRMHLFVCVP 305
BLAST of mRNA_P-canaliculata_contig10110.198.1 vs. uniprot
Match: A0A6H5JUR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUR5_9PHAE) HSP 1 Score: 166 bits (420), Expect = 9.760e-45 Identity = 89/207 (43.00%), Postives = 131/207 (63.29%), Query Frame = 1 Query: 523 EPCTWNMFLRRSPFLLESLELHSPWLSRNGGLVPERRPAKYVGWHIRTPGGESNASYVPAVHRYIIQ-ESPEVVCPAFESATQVARTSCQEFATHD----MAVYISSNSKSLARSCIEALAEHETQGGQVDLGLGPQDAHTRFSLNPNAS-MNAFLDYVFLLDATAIIRSGSSFSGTIVTMRGFVCQPTRVTE-LPERQLLACAPKN 1122
+ C WNM LRRS ++ SL+ ++PW G RPA+YV WHIRT GE+ S+ P VH+YI ++ V P F SAT A +C + HD M VYISSNSK+++R+C AE++ Q G VDLG+ DAHT +S NP+A+ +NAF+DY++L+D++ I+++GSSF+ T+ +++G C+ T+ P R L C P +
Sbjct: 17 QACAWNMLLRRSHSIMASLDANNPWTPAGFG----SRPAEYVAWHIRTSNGETKESFSPDVHQYIFNGQTSAAVFPLFLSATSFAEKACPKL-YHDNIPIMPVYISSNSKTMSRNCTALAAENKIQSGFVDLGIADSDAHTGYSANPDATALNAFIDYLYLMDSSIIVQTGSSFAFTVASIKGTSCRGAPKTKGAPVRSLYICLPND 218
BLAST of mRNA_P-canaliculata_contig10110.198.1 vs. uniprot
Match: D8LBV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV4_ECTSI) HSP 1 Score: 170 bits (431), Expect = 4.120e-43 Identity = 108/284 (38.03%), Postives = 159/284 (55.99%), Query Frame = 1 Query: 31 STCDEVWMSWPSTQLQAMTNGTYFVYKLFNSVGNLFLALNRMLPVLRFLEMGIVLDSQKSFPGFRQAFEPGVIMWEIDLAPLKQRALEIEQGGNINGFHALTLVDGLIVLSDAQLELIISTMGISASSLSELVSIALRPERHPRLRSLFS-KIHSSIGGQRR---ARPEPCTWNMFLRRSPFLLESLELHSPWLSRNGGLVPERRPAKYVGWHIRTPGGESNASYVPAVHRYIIQE-SPEVVCPAFESATQVARTSCQEFATHD---MAVYISSNSKSLAR-SC 855
S CDE+W +WP+ Q A+ NGT V+ L + VGN F+ L ++ V R+LE+G+V++ K F GFR AF+ G + W+ID P ++RA I +G N +GFH DG +VL D QL ++ S MGI+ +V +L+ +F KI I G+ + +PCTWNMF++RS ++ SLE+++PW + R KYV + IRT GE+ S+ P +H YI VVC + +AT+ A+ C D + ++ISSNS L R SC
Sbjct: 221 SECDELWRTWPAMQESAIANGTVVVFDLVSRVGNAFMDLRNIIQVARWLELGLVVN-WKGFQGFRDAFDTGELKWDIDTEPFRRRAKAISRGVNPSGFHLFWFYDGFMVLCDHQLTMLASKMGIAIQHPDAMVL---------QLKKVFPVKIRYWISGRLQNGLPASQPCTWNMFVKRSASMMRSLEVYNPWRVEGSSMS---RFQKYVAFQIRTTEGETAGSFDPKIHTYIFNNLRSTVVCNWYFTATEEAKGVCPAAFNADEGDVPLFISSNSIVLLRHSC 491
BLAST of mRNA_P-canaliculata_contig10110.198.1 vs. uniprot
Match: A0A6H5JBZ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBZ2_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 6.350e-20 Identity = 47/102 (46.08%), Postives = 68/102 (66.67%), Query Frame = 1 Query: 817 YISSNSKSLARSCIEALAEHETQGGQVDLGLGPQDAHTRFSLNPNAS-MNAFLDYVFLLDATAIIRSGSSFSGTIVTMRGFVCQPTR-VTELPERQLLACAP 1116
+ S SKS+AR+C AEH+ G VDLG+ DAHT FS NPNA+ +NAF+DY++L+D++ II++GSSFS T+ ++ C+ ELP ++L C P
Sbjct: 5 FFRSRSKSMARNCTALAAEHDVTAGFVDLGIDDLDAHTTFSKNPNATALNAFIDYLYLMDSSVIIQTGSSFSSTVARVKSLKCREVEHPPELPVKRLNVCLP 106
BLAST of mRNA_P-canaliculata_contig10110.198.1 vs. uniprot
Match: D7G5J4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5J4_ECTSI) HSP 1 Score: 79.0 bits (193), Expect = 1.200e-13 Identity = 45/104 (43.27%), Postives = 60/104 (57.69%), Query Frame = 1 Query: 526 PCTWNMFLRRSPFLLESLELHSPWLSRNGGLVPERRPAKYVGWHIRTPGGESNASYVPAVHRYIIQE-SPEVVCPAFESATQVARTSC-QEFATHDMAVYISSN 831
PC WNM LRRSP ++ S+E H+PW++ G P R A Y WHIRT GE+ S+ + RYI + E +CP F S + + +C F+ D VYISSN
Sbjct: 41 PCAWNMVLRRSPTMMNSMEAHTPWVTV--GDSPRTR-AHYHAWHIRTSEGETERSF--SKQRYIFNNVASESICPMFVSTREASEEACPSRFSGKDSPVYISSN 139 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10110.198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10110.198.1 >prot_P-canaliculata_contig10110.198.1 ID=prot_P-canaliculata_contig10110.198.1|Name=mRNA_P-canaliculata_contig10110.198.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=361bp MSWPSTQLQAMTNGTYFVYKLFNSVGNLFLALNRMLPVLRFLEMGIVLDSback to top mRNA from alignment at P-canaliculata_contig10110:5647..8934- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10110.198.1 ID=mRNA_P-canaliculata_contig10110.198.1|Name=mRNA_P-canaliculata_contig10110.198.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=3288bp|location=Sequence derived from alignment at P-canaliculata_contig10110:5647..8934- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10110:5647..8934- >mRNA_P-canaliculata_contig10110.198.1 ID=mRNA_P-canaliculata_contig10110.198.1|Name=mRNA_P-canaliculata_contig10110.198.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2166bp|location=Sequence derived from alignment at P-canaliculata_contig10110:5647..8934- (Pelvetia canaliculata dioecious)back to top |