Homology
BLAST of mRNA_P-canaliculata_contig101098.196.1 vs. uniprot
Match:
UPI001E3A5239 (hypothetical protein n=1 Tax=Sphingomonas sp. Leaf4 TaxID=2876553 RepID=UPI001E3A5239)
HSP 1 Score: 48.1 bits (113), Expect = 4.080e-5
Identity = 31/81 (38.27%), Postives = 45/81 (55.56%), Query Frame = 1
Query: 7 ILHTQHSLKRLAQRAIPSEVVSLALNYGDCVELPGGV-SRIFCQKKSIDMLKHENLITPKQAKKLKSAYLVVTEDGTLITA 246
I T+H +RL QRA+ VVS L+YG+ G+ S IF + +D+ K +K ++AYL+V+E G LITA
Sbjct: 4 ITRTKHFTQRLQQRALTEAVVSALLHYGERRSSRHGIDSLIFTKTALVDINNELGSAVFKACEKRRNAYLIVSEQGMLITA 84
BLAST of mRNA_P-canaliculata_contig101098.196.1 vs. uniprot
Match:
A0A3N1R6B0_9GAMM (Uncharacterized protein DUF4258 n=1 Tax=Marinobacter sp. 3-2 TaxID=2485141 RepID=A0A3N1R6B0_9GAMM)
HSP 1 Score: 47.8 bits (112), Expect = 6.400e-5
Identity = 26/87 (29.89%), Postives = 45/87 (51.72%), Query Frame = 1
Query: 16 TQHSLKRLAQRAIPSEVVSLALNYGDCVELPGGVSRIFCQKKSIDMLKHENLITPKQAKKLKSAYLVVTEDGTLITAGYLSKAAKRS 276
T+H +R QR + + +AL YG+ E GG S + K+ L E + + + +LVV +DG+L+TAG+ +K + +
Sbjct: 11 TKHCEERAIQRGLTDSAIDMALKYGEVYEQKGGASLVKLTKRQRKALMKELKNLMRILNREQDMFLVVGDDGSLVTAGWQNKRIRHN 97
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101098.196.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 4.08e-5 / Id = 38.27 Expect = 6.40e-5 / Id = 29.89 Sequence UPI001E3A5239 A0A3N1R6B0_9GAMM
Match Name E-value Identity Description
UPI001E3A5239 4.080e-5 38.27 hypothetical protein n=1 Tax=Sphingomonas sp. Leaf... [more] A0A3N1R6B0_9GAMM 6.400e-5 29.89 Uncharacterized protein DUF4258 n=1 Tax=Marinobact... [more]
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 1 Model size 294 Cds size 294 Stop 1 Start 1
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815584.5056553-CDS-P-canaliculata_contig101098:390..684 1622815584.5056553-CDS-P-canaliculata_contig101098:390..684 Pelvetia canaliculata dioecious CDS P-canaliculata_contig101098 391..684 - 1693494150.959004-CDS-P-canaliculata_contig101098:390..684 1693494150.959004-CDS-P-canaliculata_contig101098:390..684 Pelvetia canaliculata dioecious CDS P-canaliculata_contig101098 391..684 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig101098.196.1
>prot_P-canaliculata_contig101098.196.1 ID=prot_P-canaliculata_contig101098.196.1|Name=mRNA_P-canaliculata_contig101098.196.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=98bp
MMILHTQHSLKRLAQRAIPSEVVSLALNYGDCVELPGGVSRIFCQKKSID back to top mRNA from alignment at P-canaliculata_contig101098:391..684-
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig101098.196.1 ID=mRNA_P-canaliculata_contig101098.196.1|Name=mRNA_P-canaliculata_contig101098.196.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=294bp|location=Sequence derived from alignment at P-canaliculata_contig101098:391..684- (Pelvetia canaliculata dioecious)ATGATGATATTACATACACAACACAGTCTAAAACGCTTAGCACAGCGAGC
TATCCCATCTGAAGTAGTTTCCTTGGCATTGAATTACGGTGATTGTGTGG
AGCTTCCTGGCGGAGTGAGCCGTATTTTTTGTCAAAAGAAAAGTATAGAT
ATGCTTAAGCACGAAAACCTTATTACACCCAAACAAGCTAAAAAGCTTAA
GTCAGCCTATCTAGTAGTGACTGAAGACGGCACGCTGATAACCGCGGGGT
ATCTATCAAAAGCAGCTAAGCGCTCTAACTGGAAATATACGTGA back to top Coding sequence (CDS) from alignment at P-canaliculata_contig101098:391..684-
>mRNA_P-canaliculata_contig101098.196.1 ID=mRNA_P-canaliculata_contig101098.196.1|Name=mRNA_P-canaliculata_contig101098.196.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at P-canaliculata_contig101098:391..684- (Pelvetia canaliculata dioecious) back to top