mRNA_P-canaliculata_contig101098.196.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig101098.196.1 vs. uniprot
Match: UPI001E3A5239 (hypothetical protein n=1 Tax=Sphingomonas sp. Leaf4 TaxID=2876553 RepID=UPI001E3A5239) HSP 1 Score: 48.1 bits (113), Expect = 4.080e-5 Identity = 31/81 (38.27%), Postives = 45/81 (55.56%), Query Frame = 1 Query: 7 ILHTQHSLKRLAQRAIPSEVVSLALNYGDCVELPGGV-SRIFCQKKSIDMLKHENLITPKQAKKLKSAYLVVTEDGTLITA 246
I T+H +RL QRA+ VVS L+YG+ G+ S IF + +D+ K +K ++AYL+V+E G LITA
Sbjct: 4 ITRTKHFTQRLQQRALTEAVVSALLHYGERRSSRHGIDSLIFTKTALVDINNELGSAVFKACEKRRNAYLIVSEQGMLITA 84
BLAST of mRNA_P-canaliculata_contig101098.196.1 vs. uniprot
Match: A0A3N1R6B0_9GAMM (Uncharacterized protein DUF4258 n=1 Tax=Marinobacter sp. 3-2 TaxID=2485141 RepID=A0A3N1R6B0_9GAMM) HSP 1 Score: 47.8 bits (112), Expect = 6.400e-5 Identity = 26/87 (29.89%), Postives = 45/87 (51.72%), Query Frame = 1 Query: 16 TQHSLKRLAQRAIPSEVVSLALNYGDCVELPGGVSRIFCQKKSIDMLKHENLITPKQAKKLKSAYLVVTEDGTLITAGYLSKAAKRS 276
T+H +R QR + + +AL YG+ E GG S + K+ L E + + + +LVV +DG+L+TAG+ +K + +
Sbjct: 11 TKHCEERAIQRGLTDSAIDMALKYGEVYEQKGGASLVKLTKRQRKALMKELKNLMRILNREQDMFLVVGDDGSLVTAGWQNKRIRHN 97 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig101098.196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig101098.196.1 >prot_P-canaliculata_contig101098.196.1 ID=prot_P-canaliculata_contig101098.196.1|Name=mRNA_P-canaliculata_contig101098.196.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=98bp MMILHTQHSLKRLAQRAIPSEVVSLALNYGDCVELPGGVSRIFCQKKSIDback to top mRNA from alignment at P-canaliculata_contig101098:391..684- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig101098.196.1 ID=mRNA_P-canaliculata_contig101098.196.1|Name=mRNA_P-canaliculata_contig101098.196.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=294bp|location=Sequence derived from alignment at P-canaliculata_contig101098:391..684- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig101098:391..684- >mRNA_P-canaliculata_contig101098.196.1 ID=mRNA_P-canaliculata_contig101098.196.1|Name=mRNA_P-canaliculata_contig101098.196.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at P-canaliculata_contig101098:391..684- (Pelvetia canaliculata dioecious)back to top |