Homology
BLAST of mRNA_P-canaliculata_contig100951.181.1 vs. uniprot
Match:
D8LP08_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP08_ECTSI)
HSP 1 Score: 112 bits (279), Expect = 2.250e-28
Identity = 63/96 (65.62%), Postives = 70/96 (72.92%), Query Frame = 1
Query: 1 RYVVRSDRQTAATGVPATSSRPKLDGFTTEHLGDGCVAAFALTSALGQSEMMLTTAATAFVSVLERGGGPAEAVAMALLPAASFLPRAAGNLLLYS 288
RYVVRSDR+ + + P++DGFT HLGDGCVAAFALTSALGQSE LT AA FV VL RGGG EA+A LLPAA FLPRAA +L LYS
Sbjct: 144 RYVVRSDREQSPSATTGEPPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLTLAAGEFVRVLWRGGGILEALAAVLLPAAPFLPRAAADLFLYS 239
BLAST of mRNA_P-canaliculata_contig100951.181.1 vs. uniprot
Match:
A0A6H5KWW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWW8_9PHAE)
HSP 1 Score: 112 bits (281), Expect = 6.330e-28
Identity = 63/97 (64.95%), Postives = 71/97 (73.20%), Query Frame = 1
Query: 1 RYVVRSDRQTAATGVPATSSRPKLDGFTTEHLGDGCVAAFALTSALGQSEMMLTTAATAFVSVLERGGGPAEAVAMALLPAASFLPRAAGNLLLYSA 291
RYVVRSDR+ + + P++DGFT HLGDGCVAAFALTSALGQSE LT AA FV VL RGGG EA+A LLPAA FLPRAA +L LY+A
Sbjct: 236 RYVVRSDREQSPSATTGEPPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLTLAAGEFVGVLGRGGGILEALAAVLLPAAPFLPRAAADLFLYTA 332
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100951.181.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 2.25e-28 / Id = 65.63 Expect = 6.33e-28 / Id = 64.95 Sequence D8LP08_ECTSI A0A6H5KWW8_9PHAE
Match Name E-value Identity Description
D8LP08_ECTSI 2.250e-28 65.63 Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more] A0A6H5KWW8_9PHAE 6.330e-28 64.95 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Ec32 ortholog description expressed unknown protein Ec32 ortholog Ec-06_007040.1 Exons 1 Model size 291 Cds size 291 Stop 0 Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815583.4599917-CDS-P-canaliculata_contig100951:421..712 1622815583.4599917-CDS-P-canaliculata_contig100951:421..712 Pelvetia canaliculata dioecious CDS P-canaliculata_contig100951 422..712 - 1693494150.3433042-CDS-P-canaliculata_contig100951:421..712 1693494150.3433042-CDS-P-canaliculata_contig100951:421..712 Pelvetia canaliculata dioecious CDS P-canaliculata_contig100951 422..712 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100951.181.1
>prot_P-canaliculata_contig100951.181.1 ID=prot_P-canaliculata_contig100951.181.1|Name=mRNA_P-canaliculata_contig100951.181.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=97bp
RYVVRSDRQTAATGVPATSSRPKLDGFTTEHLGDGCVAAFALTSALGQSE back to top mRNA from alignment at P-canaliculata_contig100951:422..712-
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100951.181.1 ID=mRNA_P-canaliculata_contig100951.181.1|Name=mRNA_P-canaliculata_contig100951.181.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=291bp|location=Sequence derived from alignment at P-canaliculata_contig100951:422..712- (Pelvetia canaliculata dioecious)AGATACGTCGTGAGGTCGGACCGGCAAACAGCAGCCACTGGTGTCCCCGC
CACCTCATCCCGGCCAAAATTGGACGGGTTCACGACGGAACATTTAGGAG
ACGGATGCGTCGCCGCCTTCGCCCTTACGTCTGCCCTAGGCCAAAGCGAG
ATGATGTTGACCACGGCCGCGACAGCATTCGTGAGCGTTTTGGAGCGGGG
AGGGGGTCCTGCAGAGGCCGTGGCAATGGCCTTGTTGCCCGCGGCGTCAT
TCTTGCCGCGAGCTGCGGGGAACCTTTTGCTGTACTCGGCC back to top Coding sequence (CDS) from alignment at P-canaliculata_contig100951:422..712-
>mRNA_P-canaliculata_contig100951.181.1 ID=mRNA_P-canaliculata_contig100951.181.1|Name=mRNA_P-canaliculata_contig100951.181.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at P-canaliculata_contig100951:422..712- (Pelvetia canaliculata dioecious) back to top