mRNA_P-canaliculata_contig100951.181.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig100951.181.1 vs. uniprot
Match: D8LP08_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP08_ECTSI) HSP 1 Score: 112 bits (279), Expect = 2.250e-28 Identity = 63/96 (65.62%), Postives = 70/96 (72.92%), Query Frame = 1 Query: 1 RYVVRSDRQTAATGVPATSSRPKLDGFTTEHLGDGCVAAFALTSALGQSEMMLTTAATAFVSVLERGGGPAEAVAMALLPAASFLPRAAGNLLLYS 288
RYVVRSDR+ + + P++DGFT HLGDGCVAAFALTSALGQSE LT AA FV VL RGGG EA+A LLPAA FLPRAA +L LYS
Sbjct: 144 RYVVRSDREQSPSATTGEPPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLTLAAGEFVRVLWRGGGILEALAAVLLPAAPFLPRAAADLFLYS 239
BLAST of mRNA_P-canaliculata_contig100951.181.1 vs. uniprot
Match: A0A6H5KWW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWW8_9PHAE) HSP 1 Score: 112 bits (281), Expect = 6.330e-28 Identity = 63/97 (64.95%), Postives = 71/97 (73.20%), Query Frame = 1 Query: 1 RYVVRSDRQTAATGVPATSSRPKLDGFTTEHLGDGCVAAFALTSALGQSEMMLTTAATAFVSVLERGGGPAEAVAMALLPAASFLPRAAGNLLLYSA 291
RYVVRSDR+ + + P++DGFT HLGDGCVAAFALTSALGQSE LT AA FV VL RGGG EA+A LLPAA FLPRAA +L LY+A
Sbjct: 236 RYVVRSDREQSPSATTGEPPVPQMDGFTVGHLGDGCVAAFALTSALGQSEAPLTLAAGEFVGVLGRGGGILEALAAVLLPAAPFLPRAAADLFLYTA 332 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100951.181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100951.181.1 >prot_P-canaliculata_contig100951.181.1 ID=prot_P-canaliculata_contig100951.181.1|Name=mRNA_P-canaliculata_contig100951.181.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=97bp RYVVRSDRQTAATGVPATSSRPKLDGFTTEHLGDGCVAAFALTSALGQSEback to top mRNA from alignment at P-canaliculata_contig100951:422..712- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig100951.181.1 ID=mRNA_P-canaliculata_contig100951.181.1|Name=mRNA_P-canaliculata_contig100951.181.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=291bp|location=Sequence derived from alignment at P-canaliculata_contig100951:422..712- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig100951:422..712- >mRNA_P-canaliculata_contig100951.181.1 ID=mRNA_P-canaliculata_contig100951.181.1|Name=mRNA_P-canaliculata_contig100951.181.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at P-canaliculata_contig100951:422..712- (Pelvetia canaliculata dioecious)back to top |