mRNA_P-canaliculata_contig100934.179.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig100934.179.1
Unique NamemRNA_P-canaliculata_contig100934.179.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100934.179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100934contigP-canaliculata_contig100934:259..600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size342
Cds size342
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.374854-CDS-P-canaliculata_contig100934:258..6001622815583.374854-CDS-P-canaliculata_contig100934:258..600Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100934 259..600 -
1693494150.3238964-CDS-P-canaliculata_contig100934:258..6001693494150.3238964-CDS-P-canaliculata_contig100934:258..600Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100934 259..600 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100934.179.1prot_P-canaliculata_contig100934.179.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig100934 259..600 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig100934.179.1

>prot_P-canaliculata_contig100934.179.1 ID=prot_P-canaliculata_contig100934.179.1|Name=mRNA_P-canaliculata_contig100934.179.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=114bp
MHLDVAANSRTINAIAPVSVTDPVESDPMEIRHFRTALFTVLAGAGAGDV
TFDVLEADTAGGTYTQVSGLQTVKAGLAPGSKTLFQLDASTRKPFVKVSV
EASSDTVLAVSALL
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mRNA from alignment at P-canaliculata_contig100934:259..600-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100934.179.1 ID=mRNA_P-canaliculata_contig100934.179.1|Name=mRNA_P-canaliculata_contig100934.179.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=342bp|location=Sequence derived from alignment at P-canaliculata_contig100934:259..600- (Pelvetia canaliculata dioecious)
ATGCATCTCGACGTAGCAGCCAACAGCCGCACCATCAACGCAATCGCCCC
CGTCTCCGTGACGGACCCGGTCGAGAGCGATCCGATGGAGATCCGGCACT
TTCGAACGGCCCTCTTCACCGTGCTCGCAGGAGCGGGCGCCGGCGATGTG
ACCTTCGACGTCCTTGAGGCCGACACGGCCGGCGGGACGTATACCCAGGT
CTCGGGTCTCCAGACGGTGAAAGCTGGTCTGGCTCCGGGTTCCAAGACCC
TCTTCCAGCTCGACGCCTCGACCCGCAAGCCTTTCGTGAAGGTCTCGGTC
GAGGCTTCGTCCGACACGGTTCTTGCCGTGAGCGCCCTCCTT
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Coding sequence (CDS) from alignment at P-canaliculata_contig100934:259..600-

>mRNA_P-canaliculata_contig100934.179.1 ID=mRNA_P-canaliculata_contig100934.179.1|Name=mRNA_P-canaliculata_contig100934.179.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at P-canaliculata_contig100934:259..600- (Pelvetia canaliculata dioecious)
ATGCATCTCGACGTAGCAGCCAACAGCCGCACCATCAACGCAATCGCCCC
CGTCTCCGTGACGGACCCGGTCGAGAGCGATCCGATGGAGATCCGGCACT
TTCGAACGGCCCTCTTCACCGTGCTCGCAGGAGCGGGCGCCGGCGATGTG
ACCTTCGACGTCCTTGAGGCCGACACGGCCGGCGGGACGTATACCCAGGT
CTCGGGTCTCCAGACGGTGAAAGCTGGTCTGGCTCCGGGTTCCAAGACCC
TCTTCCAGCTCGACGCCTCGACCCGCAAGCCTTTCGTGAAGGTCTCGGTC
GAGGCTTCGTCCGACACGGTTCTTGCCGTGAGCGCCCTCCTTATGCATCT
CGACGTAGCAGCCAACAGCCGCACCATCAACGCAATCGCCCCCGTCTCCG
TGACGGACCCGGTCGAGAGCGATCCGATGGAGATCCGGCACTTTCGAACG
GCCCTCTTCACCGTGCTCGCAGGAGCGGGCGCCGGCGATGTGACCTTCGA
CGTCCTTGAGGCCGACACGGCCGGCGGGACGTATACCCAGGTCTCGGGTC
TCCAGACGGTGAAAGCTGGTCTGGCTCCGGGTTCCAAGACCCTCTTCCAG
CTCGACGCCTCGACCCGCAAGCCTTTCGTGAAGGTCTCGGTCGAGGCTTC
GTCCGACACGGTTCTTGCCGTGAGCGCCCTCCTT
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