mRNA_P-canaliculata_contig100904.171.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_P-canaliculata_contig100904.171.1 vs. uniprot
Match: A0A2E8K2I6_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E8K2I6_9PLAN)

HSP 1 Score: 72.0 bits (175), Expect = 2.850e-10
Identity = 49/122 (40.16%), Postives = 68/122 (55.74%), Query Frame = 1

Query:  286 VAWHLGDAIEDALHGAVWLAALSAGAAWLHLGVLAPARQWAAAVLLGVTALWALDAAQQVWIEYPQNVAFFAEHQTELLTSRGIEPGSGMAELFARRLTFNDATGPVGFSNVFASLAGAAGV 651
            V  H  + + D   GA WLAA+  G A  HL   +  R+   +++LG  A+  +    QV+ E+   VAFF  ++  +L SRG   GS  A  F RRL   +ATG +GFSNVF+ L+GAA V
Sbjct:   94 VVLHGTEGLLDGWRGADWLAAVMLGVALAHLVRKSVNRRIVISIMLGAIAVSGVRGFHQVFWEHADTVAFFESNRELVLGSRGWAEGSPAALAFERRLRQPEATGWIGFSNVFSGLSGAAAV 215

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BLAST of mRNA_P-canaliculata_contig100904.171.1 vs. uniprot
Match: A0A2E3Q617_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2E3Q617_9BACT)

HSP 1 Score: 71.6 bits (174), Expect = 3.820e-10
Identity = 47/119 (39.50%), Postives = 66/119 (55.46%), Query Frame = 1

Query:  295 HLGDAIEDALHGAVWLAALSAGAAWLHLGVLAPARQWAAAVLLGVTALWALDAAQQVWIEYPQNVAFFAEHQTELLTSRGIEPGSGMAELFARRLTFNDATGPVGFSNVFASLAGAAGV 651
            H    + D   G+ W AA+  GAA  HL  L   R+   ++LL   A+  +    QV+ E+   VA+F  ++ ++L SRG   GS  A  F RRL   +ATG +GFSNVF+ L+GAA V
Sbjct:   97 HGAGDLLDGWRGSDWFAAVVLGAALAHLVRLPGNRRMVLSILLAAVAVGGVRGFHQVFWEHADTVAYFEANRDQVLASRGWAEGSPAALAFERRLRQPEATGWIGFSNVFSGLSGAAAV 215

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BLAST of mRNA_P-canaliculata_contig100904.171.1 vs. uniprot
Match: A0A3L7TI01_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7TI01_9BACT)

HSP 1 Score: 65.5 bits (158), Expect = 4.100e-8
Identity = 84/253 (33.20%), Postives = 116/253 (45.85%), Query Frame = 1

Query:   64 LVPLISQVAFDVDPRMALTLNAATDGATGLTAAALVWWAAGLTAVSAGGLAVA--LLAGVRLRIGLLLLAAAGAAGVAWHLGDAIEDALHGAVWLAALSAGAAWLHLGVLAPARQWAAAVLLGVTALWALDAAQQVWIEYPQNVAFFAEHQTELLTSRGIEPGSGMAELFARRLTFNDATGPVGFSNVFASLAGAAG-VLAAVXXAAWLRQRRGAAAXXXXXXXXXXXLVVTLTHSKGAPGALAVTAAAALAL 813
            L+P+  Q+ FDVDP     L+A    A G T + ++     +  + A  LA+A    AG+ +   ++LLA A    +A+   ++I DA  G  WLAA  A  A  HL      R  A A+++ +TA +AL    QV  E+   VA F E +      RG    S  A  + RRL   +ATG  GFSNVF++  G    VL A    +W R +                L+V      G  GAL  TA AAL L
Sbjct:   28 LLPIQPQLWFDVDPA----LDAMPMLAMGPTGSHVL----DVLLILAATLAIAGEHRAGLGVHWSMVLLALAPLPALAYWGQNSI-DAFRGDTWLAAALAFVALAHLVRERSLRVMAIAIVVALTAAFALRGIVQVTTEHDATVALFRETRATFFAERGWSADSSAARTYERRLMQAEATGWFGFSNVFSTFMGVGALVLGATAVMSWRRVKSTLTMSLTIAALACAALLVI----NGGKGALGATALAALLL 267

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BLAST of mRNA_P-canaliculata_contig100904.171.1 vs. uniprot
Match: A0A424KKF0_9BACT (O-antigen ligase domain-containing protein n=1 Tax=Phycisphaera sp. TMED9 TaxID=1986611 RepID=A0A424KKF0_9BACT)

HSP 1 Score: 62.4 bits (150), Expect = 4.180e-7
Identity = 52/150 (34.67%), Postives = 73/150 (48.67%), Query Frame = 1

Query:  337 WLAALSAGAAWLHLGVLAPARQWAAAVLLGVTALWALDAAQQVWIEYPQNVAFFAEHQTELLTSRGIEPGSGMAELFARRLTFNDATGPVGFSNVFASLAGAAGVLAAVXXAAWLRQRRGAAAXXXXXXXXXXXLVVTLTHSKGAPGALA 786
            W AA + G A  HL      R    A+LLG   + A     QV +E+   VAFF  ++ ++L +RG    S  A  F RRL   +ATG +GFSN+F+  A AAG +  V  A  + +RRG  A           ++  L    G+ GA+A
Sbjct:  125 WFAAATTGVALAHLVADRRVRVVVLAMLLGGIVVMACRGVHQVVVEHADTVAFFDANRADILATRGWLEESPAALAFERRLRQPEATGWIGFSNIFSGFA-AAGCIGLVG-ALVVSRRRGHEAGGPVLLGLAAVMLAVLVGVNGSKGAIA 272

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig100904.171.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig100904.171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
A0A2E8K2I6_9PLAN	2.850e-10	40.16	Uncharacterized protein n=1 Tax=Planctomycetaceae ...	[more]
A0A2E3Q617_9BACT	3.820e-10	39.50	Uncharacterized protein n=1 Tax=Phycisphaerae bact...	[more]
A0A3L7TI01_9BACT	4.100e-8	33.20	Uncharacterized protein n=1 Tax=Planctomycetes bac...	[more]
A0A424KKF0_9BACT	4.180e-7	34.67	O-antigen ligase domain-containing protein n=1 Tax...	[more]

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815582.8025658-CDS-P-canaliculata_contig100904:63..1008	1622815582.8025658-CDS-P-canaliculata_contig100904:63..1008	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig100904 64..1008 +
1693494150.0348604-CDS-P-canaliculata_contig100904:63..1008	1693494150.0348604-CDS-P-canaliculata_contig100904:63..1008	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig100904 64..1008 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig100904.171.1	prot_P-canaliculata_contig100904.171.1	Pelvetia canaliculata dioecious	polypeptide	P-canaliculata_contig100904 64..1008 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-canaliculata_contig100904:64..1008+
coding sequence from alignment at P-canaliculata_contig100904:64..1008+

protein sequence of mRNA_P-canaliculata_contig100904.171.1

>prot_P-canaliculata_contig100904.171.1 ID=prot_P-canaliculata_contig100904.171.1|Name=mRNA_P-canaliculata_contig100904.171.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=315bp
WAPALVPYLAAALMALTLVPCLVPLISQVAFDVDPRMALTLNAATDGATG
LTAAALVWWAAGLTAVSAGGLAVALLAGVRLRIGLLLLAAAGAAGVAWHL
GDAIEDALHGAVWLAALSAGAAWLHLGVLAPARQWAAAVLLGVTALWALD
AAQQVWIEYPQNVAFFAEHQTELLTSRGIEPGSGMAELFARRLTFNDATG
PVGFSNVFASLAGAAGVLAAVAGAAWLRQRRGAAAGAAALSALAAVLVVT
LTHSKGAPGALAVTAAAALALGAARRWGGRAAPALARAAGPLAVIAVLIV
IALRLAAGAPPPPAG

mRNA from alignment at P-canaliculata_contig100904:64..1008+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-canaliculata_contig100904.171.1 ID=mRNA_P-canaliculata_contig100904.171.1|Name=mRNA_P-canaliculata_contig100904.171.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=945bp|location=Sequence derived from alignment at P-canaliculata_contig100904:64..1008+ (Pelvetia canaliculata dioecious)
TGGGCTCCGGCCCTCGTGCCCTACCTGGCCGCGGCCCTGATGGCCCTGAC
CCTGGTGCCGTGTCTGGTGCCGCTGATTTCGCAGGTCGCCTTCGACGTCG
ATCCGCGGATGGCCCTGACCCTGAATGCCGCCACCGACGGGGCCACGGGT
CTGACCGCCGCCGCGTTGGTCTGGTGGGCGGCGGGTCTCACCGCGGTGTC
GGCCGGCGGACTCGCGGTGGCCCTGCTGGCGGGCGTACGCCTGCGCATCG
GGTTACTGCTGCTGGCCGCGGCCGGCGCCGCGGGGGTGGCGTGGCACCTG
GGTGACGCCATCGAAGACGCCCTGCACGGCGCCGTGTGGCTGGCCGCGCT
GTCGGCCGGGGCGGCGTGGCTGCACCTCGGGGTGTTAGCGCCGGCGCGGC
AGTGGGCGGCCGCGGTGCTGCTGGGGGTCACCGCGCTGTGGGCCCTGGAC
GCCGCGCAGCAGGTGTGGATCGAGTACCCGCAGAACGTCGCCTTCTTCGC
CGAGCACCAGACCGAACTGCTGACGTCCCGGGGGATCGAGCCCGGCTCGG
GCATGGCCGAACTTTTCGCGCGGCGGCTCACCTTCAACGACGCCACGGGA
CCGGTGGGCTTCTCCAACGTGTTCGCCTCGCTGGCCGGGGCGGCGGGGGT
GCTGGCCGCGGTGGCGGGCGCAGCGTGGTTACGCCAGCGTCGCGGGGCGG
CGGCGGGCGCCGCCGCCCTGAGTGCTCTCGCCGCCGTTCTGGTGGTCACG
CTGACCCACTCCAAGGGCGCCCCCGGGGCGCTGGCCGTGACCGCGGCGGC
GGCGCTGGCCCTGGGGGCAGCGCGGCGGTGGGGCGGTCGCGCCGCGCCGG
CCCTGGCCCGCGCCGCCGGTCCGCTGGCCGTAATTGCGGTGCTGATCGTA
ATTGCGCTGCGGCTGGCGGCGGGCGCCCCGCCGCCGCCAGCCGGC

Coding sequence (CDS) from alignment at P-canaliculata_contig100904:64..1008+

>mRNA_P-canaliculata_contig100904.171.1 ID=mRNA_P-canaliculata_contig100904.171.1|Name=mRNA_P-canaliculata_contig100904.171.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1890bp|location=Sequence derived from alignment at P-canaliculata_contig100904:64..1008+ (Pelvetia canaliculata dioecious)
TGGGCTCCGGCCCTCGTGCCCTACCTGGCCGCGGCCCTGATGGCCCTGAC
CCTGGTGCCGTGTCTGGTGCCGCTGATTTCGCAGGTCGCCTTCGACGTCG
ATCCGCGGATGGCCCTGACCCTGAATGCCGCCACCGACGGGGCCACGGGT
CTGACCGCCGCCGCGTTGGTCTGGTGGGCGGCGGGTCTCACCGCGGTGTC
GGCCGGCGGACTCGCGGTGGCCCTGCTGGCGGGCGTACGCCTGCGCATCG
GGTTACTGCTGCTGGCCGCGGCCGGCGCCGCGGGGGTGGCGTGGCACCTG
GGTGACGCCATCGAAGACGCCCTGCACGGCGCCGTGTGGCTGGCCGCGCT
GTCGGCCGGGGCGGCGTGGCTGCACCTCGGGGTGTTAGCGCCGGCGCGGC
AGTGGGCGGCCGCGGTGCTGCTGGGGGTCACCGCGCTGTGGGCCCTGGAC
GCCGCGCAGCAGGTGTGGATCGAGTACCCGCAGAACGTCGCCTTCTTCGC
CGAGCACCAGACCGAACTGCTGACGTCCCGGGGGATCGAGCCCGGCTCGG
GCATGGCCGAACTTTTCGCGCGGCGGCTCACCTTCAACGACGCCACGGGA
CCGGTGGGCTTCTCCAACGTGTTCGCCTCGCTGGCCGGGGCGGCGGGGGT
GCTGGCCGCGGTGGCGGGCGCAGCGTGGTTACGCCAGCGTCGCGGGGCGG
CGGCGGGCGCCGCCGCCCTGAGTGCTCTCGCCGCCGTTCTGGTGGTCACG
CTGACCCACTCCAAGGGCGCCCCCGGGGCGCTGGCCGTGACCGCGGCGGC
GGCGCTGGCCCTGGGGGCAGCGCGGCGGTGGGGCGGTCGCGCCGCGCCGG
CCCTGGCCCGCGCCGCCGGTCCGCTGGCCGTAATTGCGGTGCTGATCGTA
ATTGCGCTGCGGCTGGCGGCGGGCGCCCCGCCGCCGCCAGCCGGCTGGGC
TCCGGCCCTCGTGCCCTACCTGGCCGCGGCCCTGATGGCCCTGACCCTGG
TGCCGTGTCTGGTGCCGCTGATTTCGCAGGTCGCCTTCGACGTCGATCCG
CGGATGGCCCTGACCCTGAATGCCGCCACCGACGGGGCCACGGGTCTGAC
CGCCGCCGCGTTGGTCTGGTGGGCGGCGGGTCTCACCGCGGTGTCGGCCG
GCGGACTCGCGGTGGCCCTGCTGGCGGGCGTACGCCTGCGCATCGGGTTA
CTGCTGCTGGCCGCGGCCGGCGCCGCGGGGGTGGCGTGGCACCTGGGTGA
CGCCATCGAAGACGCCCTGCACGGCGCCGTGTGGCTGGCCGCGCTGTCGG
CCGGGGCGGCGTGGCTGCACCTCGGGGTGTTAGCGCCGGCGCGGCAGTGG
GCGGCCGCGGTGCTGCTGGGGGTCACCGCGCTGTGGGCCCTGGACGCCGC
GCAGCAGGTGTGGATCGAGTACCCGCAGAACGTCGCCTTCTTCGCCGAGC
ACCAGACCGAACTGCTGACGTCCCGGGGGATCGAGCCCGGCTCGGGCATG
GCCGAACTTTTCGCGCGGCGGCTCACCTTCAACGACGCCACGGGACCGGT
GGGCTTCTCCAACGTGTTCGCCTCGCTGGCCGGGGCGGCGGGGGTGCTGG
CCGCGGTGGCGGGCGCAGCGTGGTTACGCCAGCGTCGCGGGGCGGCGGCG
GGCGCCGCCGCCCTGAGTGCTCTCGCCGCCGTTCTGGTGGTCACGCTGAC
CCACTCCAAGGGCGCCCCCGGGGCGCTGGCCGTGACCGCGGCGGCGGCGC
TGGCCCTGGGGGCAGCGCGGCGGTGGGGCGGTCGCGCCGCGCCGGCCCTG
GCCCGCGCCGCCGGTCCGCTGGCCGTAATTGCGGTGCTGATCGTAATTGC
GCTGCGGCTGGCGGCGGGCGCCCCGCCGCCGCCAGCCGGC