mRNA_P-canaliculata_contig100904.171.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig100904.171.1 vs. uniprot
Match: A0A2E8K2I6_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E8K2I6_9PLAN) HSP 1 Score: 72.0 bits (175), Expect = 2.850e-10 Identity = 49/122 (40.16%), Postives = 68/122 (55.74%), Query Frame = 1 Query: 286 VAWHLGDAIEDALHGAVWLAALSAGAAWLHLGVLAPARQWAAAVLLGVTALWALDAAQQVWIEYPQNVAFFAEHQTELLTSRGIEPGSGMAELFARRLTFNDATGPVGFSNVFASLAGAAGV 651
V H + + D GA WLAA+ G A HL + R+ +++LG A+ + QV+ E+ VAFF ++ +L SRG GS A F RRL +ATG +GFSNVF+ L+GAA V
Sbjct: 94 VVLHGTEGLLDGWRGADWLAAVMLGVALAHLVRKSVNRRIVISIMLGAIAVSGVRGFHQVFWEHADTVAFFESNRELVLGSRGWAEGSPAALAFERRLRQPEATGWIGFSNVFSGLSGAAAV 215
BLAST of mRNA_P-canaliculata_contig100904.171.1 vs. uniprot
Match: A0A2E3Q617_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2E3Q617_9BACT) HSP 1 Score: 71.6 bits (174), Expect = 3.820e-10 Identity = 47/119 (39.50%), Postives = 66/119 (55.46%), Query Frame = 1 Query: 295 HLGDAIEDALHGAVWLAALSAGAAWLHLGVLAPARQWAAAVLLGVTALWALDAAQQVWIEYPQNVAFFAEHQTELLTSRGIEPGSGMAELFARRLTFNDATGPVGFSNVFASLAGAAGV 651
H + D G+ W AA+ GAA HL L R+ ++LL A+ + QV+ E+ VA+F ++ ++L SRG GS A F RRL +ATG +GFSNVF+ L+GAA V
Sbjct: 97 HGAGDLLDGWRGSDWFAAVVLGAALAHLVRLPGNRRMVLSILLAAVAVGGVRGFHQVFWEHADTVAYFEANRDQVLASRGWAEGSPAALAFERRLRQPEATGWIGFSNVFSGLSGAAAV 215
BLAST of mRNA_P-canaliculata_contig100904.171.1 vs. uniprot
Match: A0A3L7TI01_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7TI01_9BACT) HSP 1 Score: 65.5 bits (158), Expect = 4.100e-8 Identity = 84/253 (33.20%), Postives = 116/253 (45.85%), Query Frame = 1 Query: 64 LVPLISQVAFDVDPRMALTLNAATDGATGLTAAALVWWAAGLTAVSAGGLAVA--LLAGVRLRIGLLLLAAAGAAGVAWHLGDAIEDALHGAVWLAALSAGAAWLHLGVLAPARQWAAAVLLGVTALWALDAAQQVWIEYPQNVAFFAEHQTELLTSRGIEPGSGMAELFARRLTFNDATGPVGFSNVFASLAGAAG-VLAAVXXAAWLRQRRGAAAXXXXXXXXXXXLVVTLTHSKGAPGALAVTAAAALAL 813
L+P+ Q+ FDVDP L+A A G T + ++ + + A LA+A AG+ + ++LLA A +A+ ++I DA G WLAA A A HL R A A+++ +TA +AL QV E+ VA F E + RG S A + RRL +ATG GFSNVF++ G VL A +W R + L+V G GAL TA AAL L
Sbjct: 28 LLPIQPQLWFDVDPA----LDAMPMLAMGPTGSHVL----DVLLILAATLAIAGEHRAGLGVHWSMVLLALAPLPALAYWGQNSI-DAFRGDTWLAAALAFVALAHLVRERSLRVMAIAIVVALTAAFALRGIVQVTTEHDATVALFRETRATFFAERGWSADSSAARTYERRLMQAEATGWFGFSNVFSTFMGVGALVLGATAVMSWRRVKSTLTMSLTIAALACAALLVI----NGGKGALGATALAALLL 267
BLAST of mRNA_P-canaliculata_contig100904.171.1 vs. uniprot
Match: A0A424KKF0_9BACT (O-antigen ligase domain-containing protein n=1 Tax=Phycisphaera sp. TMED9 TaxID=1986611 RepID=A0A424KKF0_9BACT) HSP 1 Score: 62.4 bits (150), Expect = 4.180e-7 Identity = 52/150 (34.67%), Postives = 73/150 (48.67%), Query Frame = 1 Query: 337 WLAALSAGAAWLHLGVLAPARQWAAAVLLGVTALWALDAAQQVWIEYPQNVAFFAEHQTELLTSRGIEPGSGMAELFARRLTFNDATGPVGFSNVFASLAGAAGVLAAVXXAAWLRQRRGAAAXXXXXXXXXXXLVVTLTHSKGAPGALA 786
W AA + G A HL R A+LLG + A QV +E+ VAFF ++ ++L +RG S A F RRL +ATG +GFSN+F+ A AAG + V A + +RRG A ++ L G+ GA+A
Sbjct: 125 WFAAATTGVALAHLVADRRVRVVVLAMLLGGIVVMACRGVHQVVVEHADTVAFFDANRADILATRGWLEESPAALAFERRLRQPEATGWIGFSNIFSGFA-AAGCIGLVG-ALVVSRRRGHEAGGPVLLGLAAVMLAVLVGVNGSKGAIA 272 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100904.171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100904.171.1 >prot_P-canaliculata_contig100904.171.1 ID=prot_P-canaliculata_contig100904.171.1|Name=mRNA_P-canaliculata_contig100904.171.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=315bp WAPALVPYLAAALMALTLVPCLVPLISQVAFDVDPRMALTLNAATDGATGback to top mRNA from alignment at P-canaliculata_contig100904:64..1008+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig100904.171.1 ID=mRNA_P-canaliculata_contig100904.171.1|Name=mRNA_P-canaliculata_contig100904.171.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=945bp|location=Sequence derived from alignment at P-canaliculata_contig100904:64..1008+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig100904:64..1008+ >mRNA_P-canaliculata_contig100904.171.1 ID=mRNA_P-canaliculata_contig100904.171.1|Name=mRNA_P-canaliculata_contig100904.171.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1890bp|location=Sequence derived from alignment at P-canaliculata_contig100904:64..1008+ (Pelvetia canaliculata dioecious)back to top |