Homology
BLAST of mRNA_P-canaliculata_contig100901.170.1 vs. uniprot
Match:
A6VRX4_MARMS (Uncharacterized protein n=6 Tax=Marinomonas TaxID=28253 RepID=A6VRX4_MARMS)
HSP 1 Score: 61.6 bits (148), Expect = 5.910e-10
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 1
Query: 1 MKLLPARPSLEYLYREARAIKSRHRRADTSVCSVIGHFDTSLHGLSPE 144
MK+LP PS+EYL+R ARA++S+HR D SV +I HFDTS L E
Sbjct: 1 MKILPNNPSIEYLHRAARALRSKHRAGDPSVVELISHFDTSFQNLQTE 48
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100901.170.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 5.91e-10 / Id = 56.25 Sequence A6VRX4_MARMS
Match Name E-value Identity Description
A6VRX4_MARMS 5.910e-10 56.25 Uncharacterized protein n=6 Tax=Marinomonas TaxID=... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category no signal peptide or anchor Exons 1 Model size 144 Cds size 144 Stop 0 Start 1
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815582.7659917-CDS-P-canaliculata_contig100901:873..1017 1622815582.7659917-CDS-P-canaliculata_contig100901:873..1017 Pelvetia canaliculata dioecious CDS P-canaliculata_contig100901 874..1017 + 1693494150.0244997-CDS-P-canaliculata_contig100901:873..1017 1693494150.0244997-CDS-P-canaliculata_contig100901:873..1017 Pelvetia canaliculata dioecious CDS P-canaliculata_contig100901 874..1017 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100901.170.1
>prot_P-canaliculata_contig100901.170.1 ID=prot_P-canaliculata_contig100901.170.1|Name=mRNA_P-canaliculata_contig100901.170.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=48bp
MKLLPARPSLEYLYREARAIKSRHRRADTSVCSVIGHFDTSLHGLSPE back to top mRNA from alignment at P-canaliculata_contig100901:874..1017+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100901.170.1 ID=mRNA_P-canaliculata_contig100901.170.1|Name=mRNA_P-canaliculata_contig100901.170.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=144bp|location=Sequence derived from alignment at P-canaliculata_contig100901:874..1017+ (Pelvetia canaliculata dioecious)ATGAAACTCTTGCCTGCCCGTCCGAGCCTTGAGTACCTGTATCGCGAAGC
CAGGGCGATAAAATCGCGCCATCGCCGTGCAGACACGTCTGTTTGCTCGG
TCATTGGCCATTTCGATACATCGCTACACGGCTTGAGCCCGGAG back to top Coding sequence (CDS) from alignment at P-canaliculata_contig100901:874..1017+
>mRNA_P-canaliculata_contig100901.170.1 ID=mRNA_P-canaliculata_contig100901.170.1|Name=mRNA_P-canaliculata_contig100901.170.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at P-canaliculata_contig100901:874..1017+ (Pelvetia canaliculata dioecious) back to top