Homology
BLAST of mRNA_P-canaliculata_contig1009.169.1 vs. uniprot
Match:
D7G0G0_ECTSI (ILEI domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0G0_ECTSI)
HSP 1 Score: 83.2 bits (204), Expect = 5.020e-16
Identity = 49/99 (49.49%), Postives = 63/99 (63.64%), Query Frame = 1
Query: 82 MGNVFEHESRPVGEGRHVSFVDADVLEDDLKWLALKGSMLFDDDFLEEEYANLPQYDGTELPQELGNEPERGESSQQFSAWKTGREGGDHFVRRMLQIV 378
MGNV EH V+ DADV+E+DLKWL++KGSMLF+DDFLEEEY +LP Y+GTE+ GN+ G S++ G G VRRMLQ++
Sbjct: 1 MGNVLEHAGS-------VAIDDADVVEEDLKWLSVKGSMLFNDDFLEEEYTSLPPYEGTEMLPVQGNDGSPGLSAEADVG--VGGLHGQDAVRRMLQLL 90
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig1009.169.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 5.02e-16 / Id = 49.49 Sequence D7G0G0_ECTSI
Match Name E-value Identity Description
D7G0G0_ECTSI 5.020e-16 49.49 ILEI domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 83.6 Seed ortholog evalue 7.4e-14 Seed eggNOG ortholog 2880.D7G0G0 KEGG ko ko:K21991 EggNOG free text desc. guanyl-nucleotide exchange factor activity EggNOG OGs COG5184@1,KOG1426@2759 COG Functional cat. DZ Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko03110 Hectar predicted targeting category other localisation Exons 4 Model size 383 Cds size 381 Stop 0 Start 0
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815582.6954272-CDS-P-canaliculata_contig1009:21550..21661 1622815582.6954272-CDS-P-canaliculata_contig1009:21550..21661 Pelvetia canaliculata dioecious CDS P-canaliculata_contig1009 21551..21661 - 1693494149.963113-CDS-P-canaliculata_contig1009:21550..21661 1693494149.963113-CDS-P-canaliculata_contig1009:21550..21661 Pelvetia canaliculata dioecious CDS P-canaliculata_contig1009 21551..21661 - 1622815582.708822-CDS-P-canaliculata_contig1009:23009..23096 1622815582.708822-CDS-P-canaliculata_contig1009:23009..23096 Pelvetia canaliculata dioecious CDS P-canaliculata_contig1009 23010..23096 - 1693494149.980883-CDS-P-canaliculata_contig1009:23009..23096 1693494149.980883-CDS-P-canaliculata_contig1009:23009..23096 Pelvetia canaliculata dioecious CDS P-canaliculata_contig1009 23010..23096 - 1622815582.721938-CDS-P-canaliculata_contig1009:26767..26892 1622815582.721938-CDS-P-canaliculata_contig1009:26767..26892 Pelvetia canaliculata dioecious CDS P-canaliculata_contig1009 26768..26892 - 1693494149.9939249-CDS-P-canaliculata_contig1009:26767..26892 1693494149.9939249-CDS-P-canaliculata_contig1009:26767..26892 Pelvetia canaliculata dioecious CDS P-canaliculata_contig1009 26768..26892 - 1622815582.7322621-CDS-P-canaliculata_contig1009:27165..27223 1622815582.7322621-CDS-P-canaliculata_contig1009:27165..27223 Pelvetia canaliculata dioecious CDS P-canaliculata_contig1009 27166..27223 - 1693494150.007666-CDS-P-canaliculata_contig1009:27165..27223 1693494150.007666-CDS-P-canaliculata_contig1009:27165..27223 Pelvetia canaliculata dioecious CDS P-canaliculata_contig1009 27166..27223 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig1009.169.1
>prot_P-canaliculata_contig1009.169.1 ID=prot_P-canaliculata_contig1009.169.1|Name=mRNA_P-canaliculata_contig1009.169.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=127bp
LPREECVGAYSQLDNTLKRGCLQVLIAMGNVFEHESRPVGEGRHVSFVDA back to top mRNA from alignment at P-canaliculata_contig1009:21549..27223-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig1009.169.1 ID=mRNA_P-canaliculata_contig1009.169.1|Name=mRNA_P-canaliculata_contig1009.169.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=5675bp|location=Sequence derived from alignment at P-canaliculata_contig1009:21549..27223- (Pelvetia canaliculata dioecious)CTCCCTCGAGAAGAGTGTGTTGGAGCCTATAGCCAACTCGACAACACTCT
TAAAAGAG GTGACGATCTACCAGGGCCGCGCTTTTTCGGTAAACCGTTAC
TGTGGCTATTACGAAGTGCCTCGCACTTCTGTGGAAGCTCCTCAATTGAA
AGCAGTGACTTCAAGGATCTCCGCCCCCGGGGTACTTGGACTTGTACCTC
GCACTGCCTTTCTTTTTAAAATTAAACGTAGTATTCTACAGCAGTAAGTA
GTTCGTATTTTGCGTCCTTATAAGTGCGGTGTAACAAAGCGGGAAGCTGA
AGGTTCGGCTATTGCCATTGCTGACATTCAGGTTGCCTACAAGTATTGAT
CGCCATGGGGAACGTGTTCGAGCATGAGTCCAGGCCCGTGGGTGAGGGGC
GTCATGTTTCGTTCGTGGACGCTGACGTTCTCGAGGATGACCTCAAGTGG
CTCGCG GTGAGAGACAGTTTTTCGCACTCTATTTTTAGAATACGAACTTG
TATGAACTGTTACAAGTGCAGCAGCAGATACTATTGTTTACTATTGTAAA
CAACAACTGATTTTTCTTTAAACAACTGACTGGGGGATGGATGCTCAGAA
GTTCTAGGCGCGTTCTGATTTTTCTTTAAACTGTCTAGAAATAAGAGAAG
TGTACCTGCAGGAATTCAATCTTCAACTAAATAAGTAATCTGCAGAATAC
TAGTAGAGGCACTTACTGTACATCAGAGTTCCATGCTGTAAATGCATTGA
AGTACCACTGCTATAGGACAGGTATACATTCTGAAGATTTGTTAGTTGTG
GAGTCGAGTTAGCTCTATTATTCGGACATAGTAATCGCTTCGACTACAAG
GTACTGCGTGGAGCCGCAGCCTTGGCAACAGTCGGCCGTTTAGATGCCAT
GAAGGCAGCACATCACCTCCACCTTGTTCTCGAACTGTTCGGCGGCAATG
AATCTCTTCCGAGTACAGTACATTATATACAGTACATGAAATTACATCCT
GTGTCGTCCGTCTACAACAACAGCGCATCGTACAAGGCATCGTGACGTTC
GTTACGCCTTCCCAACACGTTATTTATCGCCAACCTTTTCTCCGAGTACA
CACTAAAGAAGTATATAATTATGCTGGTGGTTGCATCTGCTCACAGCATT
TTCACGTTTCTTGTTGTTGTTGTCTTCACATTAAAAACCGTTCCTCCGAT
CTCTGCTCAGTACCTACTAGCATCCTTACTGGTTCAACTGACGCGAACGC
CTTCCGTGGTCACAGGCTAACTACCCAAAAAGGATACATACTATGAAAAA
TCGAAGAGAAATATATGGACCCAGAAAAGTCAACACACACGCGATAATTG
GAAAAAAACAGAAAAATAAGGCTCCAGGCAGTATCGGGCTGGCAACCAAT
ACGCTGAATGTGAGAAACAACAACAACAACAGTCAGACGTCGCAGGGGAC
ATGTCGGACAAAGGAGATAGATGGAGCTCATCGCTCCCACTCGACACACG
AGGCCAAGCAAAATAAAACAAACAAGAAGAATCAAGAATCACCAATCAAG
ACAATAAAATCGCATGATTATATCCTTGTAGGAAGCATTATTAATATCAT
TTGTAGTAAATAGTACTGTAGAGAGACATAATCTACAACAAAAACGAGAG
AGCTTAGCTGTGCACACCTACGCGTCGCTCGCGTCGGAACGTGAACCAAA
AGTATTTCCTCTGTGATGTTCGCTCTGTACGAGGAAAGCACCAGAATAAT
ACTTCGTGGCTAATGCAGTCAGCATACAGTAATACAAGTAACAATTATCG
TAAAAGAACAGCAAGATTTTGTAAAGTACGTGCAATACTCGTCATATTAT
TTGATCACAAATGTACTGAAGTAGTATTTCATATTTCATATTCTGAAGAA
TTCCATCTACAACATTAGAGGTACCTCGGTAATCTGTGAGCTTCTGAGCA
TCCACCAGTCAGGGGGAAAATGTCAAAACGTTAAAACCAGACCGCTTCGT
GGCATTCGAACGCGTTCCCCGATGGTAGTAACATTGGGTCAATAGTATAT
ATAATTAAATAGGTTATCAATACCAGGTGGTAATTATATACGATGATGGT
TGCGTCGAACCATATACCTGGTAGTCTAGAACACAAAGAACGTCATGATA
TTATATTTGAAGAGTGGTACACTTTCGTTTTACAAGTCCGTAGGGACCTG
TTACCTTTTTCAGTACGTGTTTGTATTTCACACTACGTGCTACTTTTGTG
ACAACAGGATGAGTAAGGTATAGGACAGCTAGTGGTAGCGGTAAATACAT
AAGTTTTGGATTAAGGATTGAAACAGGACAGGACCGCCTTCGTAGATATC
TTCGACATAATCCAGACAGAAGGAACCACCGGTATACACCTGAAAGTAGA
CGAAGTTGTACGATCAGATGAATTTCAAAGGACACTCGAGTTTGCTCCTT
GTTCCTTGCCCGCCGGGTGTATTTTTCAGTAGTGGAAAAGATATTGTTGA
CGTTGACGCCCAAGTTTATGGAAATGGCGCGGCAAATGCAATTTTATTGG
GTTCCCACTTGGCGCGAGCGTTTCTCCTGCGCATTCGTTACTTCCTTGAA
GGAGCGAGCCTGACGAGAAGGACCTGCGAGCACGGTAGCTTCGTGAACAA
ATAGAGTACAGTACCTGTCCCCGAAGAGATAGGGACTCGCACGGGGATGG
ATTGATTGATTGTGTATGTCGCAGAAAGTAGGCTGATCGTGACCGCAGGC
TTTTGGTTTGGGGATTTGGAGCACTTGATTTGGAAAAGATTCGAAAACGT
GGCAGGACAATGGCGGCACTCATCTCGGTTATGATGCAACTATTGTATGA
ATATAATACAAACAGGAAATGCTCAAAAGCTACTGCTGTAGAGGGGGTTG
GCGACTGTTGTGCGGTGCCAGAGGAGGAGACCTGCACGTTTCATCTCTCG
TCATCTTGCAGTCCTTCTGAAGCCACTGCTTGGAACCCGTCGGCTCAGAG
TCGGTCTTAACGCTCCCCCCCCAAAAAAACTCCTATCTGCCAAAGTTTGA
AAGTTGTTTGAAAGTTGTTTCGCTTCCAAACATTGGAAACGAAATCTCCA
GGTACAGTAGGCTCGGATATGTTCATTTTCCAAGTTTGAAAGCGTTCCAA
GCTTACACGCACCGAACTGCAACTGGGGGTTGTAGACCCTATTCATGATC
AACGCCCCTCTCTGATCAAGAGCAATTAGCAATTGTTGATGGTACAAGTC
CGAAGAGCAAACCGTCCCCAGCAGTGTGCCTGAATAGCTTCACGATGATG
AGACCACTGCTGCTGCGATGATGTACGATGGTGTAAAATTACAGAGAGGT
GAGGGGTTGTGCACTAACCACTTTTACTGTAATACATAGTTCATAGTATT
AATAACTGTTTTGGATGGCTCACTCCCGCGTTGTGTTGGGTATCCTTGGT
ATCCTTGATAGCCTTGGTATCTAATCGACACATTCGCGCGGCGGGACTCC
GTAGGGCAACTCCCTGATGCGCCATTTGTTTTTTAAAGAGTAGAAGCTAA
GTGAGCTGCGGCGTCCGGAGCAGGGTATCTCGGCCCTTGAGGCGCCATGC
GACGCTAGCTGCGCAGGCTGTCTGGTTTTGCTATCGCTATTTGCTGTAGC
TGTAGCTGTAGCCACACCCCATCACGAGGTACGCTCTTTACATAGCCCTC
GTTGGCCATGAAGAGGATTTAAATCGTACAGCAACGGTAAATAATGTGGG
AGCGCTCTACGGCCCCTAGTCGAACTCCCTGCAGATTGTGTCTTGTTGCT
CTGCCTCATTTACCACGAGGTTCGCTTCTGCACTGCCTGTGTCGACCATA
TTTTAAGGTTCGACCCGAGGGTGGGAAATATACATAAATGGGCCACCAAA
GGCAAAAACATATTTCACAAAATGCGCAACTTAAAATCGAGGGCGGGTCG
AGGCTTTTACCAACCCGGATTCCATTTAATGACAATTTTCCAAAATATTC
CCCGAACAGTCCAAATAACCAACTGCCAAGGTTTGCAAATTTGATCCTCG
ACGTTGCAACCGATCCTCACCCCCCGCTACTCTCTCTGTGTGTTCTCCAA
ACCGGCCTCGCTCGGCGTGCTCCCTAGCTAAAGGGATCGATGCTATTCGA
CGACGACTTCTTGGAGGAAGAATACGCCAACCTCCCGCAGTACGATGGGA
CGGAACTACCACAG GCAAGAATAACCAGGCTTTTCCAAGCTTTTCCAAGC
TTTTCTAGAACCTCGTACATCGCATCGTTGACAATCAATTCTAATAATAA
GTGAGTACCGTAGATGGGGGGGTGTAGCCATCCCTCGCCCCTCGAGTACA
CGAGAGAGGTACTCGTATACAAGTACTTGTACCCTGTGTGATTAACTTAC
AAAATAATGACGATGCTGGGTGGTCAATCATGCTAGTCATATACTATCGG
TCCACGAGATCTTCGCTCAATCGATGTATGCCGACGAATCGAATATGCCT
GCCGCTTTTTCCTATACTATATGTATGTATGGTCATCACATATAGCAAGA
GTATGGATCAACCGGGTAAGGTTGCCAATCCTGCTCGTGGTCAGCTGATC
AGGGAAAACAAATATTCATCTGTCTCCGTTCGCGCCTGAAAATTTGGCCT
CTCAAAACGGGTTCGGCAGTCCCGTACCGCGTCAGCCTGCTCATCTCCAC
ACTCACGCTGAATCTGGTGCTTACTTACGGGATCCCTCCCGACTTCCGCG
ACATCGTCCATTTCTATAGTTCCAGTATCCAGTTGTCGGAAAGTGGGGGT
AGAGGGGGGTTATTCGTGTACTGTAAATGTGTTGTATTTTGGTCAATACG
TGCTTTATAGAACCATAACGGGGTGGGTGGCGCAGTCGCAGCATGAGCAC
CAGGCGTAACTGTACAGTACTTCTGAAAGGTACGTCACGTACGTGACAAG
ACTTACTCGTAAATATGATGGAAATCCCACCCTCAGCTACCGATAATCAA
CATCAACACATTGCCATCATTACCATCATCACCGTCAGCTATTCTATTCT
ACTAATATCAGGCACCATCAGCCACAATTATCATTGTCAGTTATCATCAC
CTTAGTCAACCATCATCACTATATCATTCAGCCACCGCCATCACCATTTT
GCGATCGCGCTTTTCCGTGTTAGGGCTGTAGCGCTACTGACGTCACGAGT
TATACTGCAGTGGAAGCTAGACGTATTGTAAGGGTGAGGTATTTTGACGT
CTACTGCGCGGCTCCTGTGCCCTACCCCCCGTTTTCTCGCATGTCTGAAC
CGAGGCGTCTACCTTGAATATCGAGCGACTAACGCAATCCTCGTTGAGGA
TGGTTTGGGGCATCAAGGGGAGAATATATAGTGTATAGTGTGTCGAGAGA
TAGAATAGAGAGGGAAGGGGGGTTGTGTATTCCGGTCGCCACACCTTTTT
AAACACGAAAGCTCATTGGTTGTTAGTTTTTTATACACGCCCAAGCATGA
CGCAGACCCATGGTACTGTCTGTGTTTCCCTTGTCTTTTGTGTGCACGTC
GCTAACGCGTAGGAGCTTGGGAATGAACCAGAACGAGGCGAGTCTTCCCA
ACAATTTTCCGCGTGGAAAACGGGCCGCGAGGGCGGAGATCACTTCGTTC
GGCGGATGCTTCAGATTGTAGTG back to top Coding sequence (CDS) from alignment at P-canaliculata_contig1009:21549..27223-
>mRNA_P-canaliculata_contig1009.169.1 ID=mRNA_P-canaliculata_contig1009.169.1|Name=mRNA_P-canaliculata_contig1009.169.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at P-canaliculata_contig1009:21549..27223- (Pelvetia canaliculata dioecious) back to top