mRNA_P-canaliculata_contig1009.168.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_P-canaliculata_contig1009.168.1 vs. uniprot
Match: D7G0G0_ECTSI (ILEI domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0G0_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 7.240e-22
Identity = 61/121 (50.41%), Postives = 68/121 (56.20%), Query Frame = 1

Query:    1 KVSIPRAYAWTASFAARLETASGPKFDAGMADGGTRGGDPSGG---------------------GCSNPATDGVYVYVWDACGMRVHKIGTGFHGTLPGNVYCSSGKIVDSIRDYKGMTPA 300
            KVSIP+   WTASF ARL+T +           GT G  PS                        C NPATDGVYVYVWDA   RVHK+GTGFHGTL GNVY SS K++D IR +KGM PA
Sbjct:  329 KVSIPKPGTWTASFPARLDTEAE----------GTSGSTPSSARRXXXXXXXXXXXXXXXXXXXXCCNPATDGVYVYVWDADTKRVHKVGTGFHGTLAGNVYLSSKKVLDDIRVFKGMEPA 439

[Close]

BLAST of mRNA_P-canaliculata_contig1009.168.1 vs. uniprot
Match: A0A6H5K114_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K114_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 7.290e-22
Identity = 61/121 (50.41%), Postives = 68/121 (56.20%), Query Frame = 1

Query:    1 KVSIPRAYAWTASFAARLETASGPKFDAGMADGGTRGGDPSGG---------------------GCSNPATDGVYVYVWDACGMRVHKIGTGFHGTLPGNVYCSSGKIVDSIRDYKGMTPA 300
            KVSIP+   WTASF ARL+T +           GT G  PS                        C NPATDGVYVYVWDA   RVHK+GTGFHGTL GNVY SS K++D IR +KGM PA
Sbjct:  280 KVSIPKPGTWTASFPARLDTEAE----------GTSGSTPSSARRGXXXXXXXXXXXXXXXXXXXCCNPATDGVYVYVWDADTKRVHKVGTGFHGTLAGNVYMSSKKVLDDIRVFKGMEPA 390

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig1009.168.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig1009.168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
D7G0G0_ECTSI	7.240e-22	50.41	ILEI domain-containing protein n=1 Tax=Ectocarpus ...	[more]
A0A6H5K114_9PHAE	7.290e-22	50.41	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	104.8
Seed ortholog evalue	5.5e-20
Seed eggNOG ortholog	2880.D7G0G0
KEGG ko	ko:K21991
EggNOG free text desc.	guanyl-nucleotide exchange factor activity
EggNOG OGs	COG5184@1,KOG1426@2759
COG Functional cat.	DZ
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko03110
Hectar predicted targeting category	other localisation
Exons	5
Model size	676
Cds size	675
Stop	0
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig1009.168.1	prot_P-canaliculata_contig1009.168.1	Pelvetia canaliculata dioecious	polypeptide	P-canaliculata_contig1009 15466..18487 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815582.3357677-CDS-P-canaliculata_contig1009:15465..15544	1622815582.3357677-CDS-P-canaliculata_contig1009:15465..15544	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig1009 15466..15544 -
1693494149.7067394-CDS-P-canaliculata_contig1009:15465..15544	1693494149.7067394-CDS-P-canaliculata_contig1009:15465..15544	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig1009 15466..15544 -
1622815582.3481886-CDS-P-canaliculata_contig1009:15832..15897	1622815582.3481886-CDS-P-canaliculata_contig1009:15832..15897	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig1009 15833..15897 -
1693494149.7232912-CDS-P-canaliculata_contig1009:15832..15897	1693494149.7232912-CDS-P-canaliculata_contig1009:15832..15897	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig1009 15833..15897 -
1622815582.361917-CDS-P-canaliculata_contig1009:16913..17120	1622815582.361917-CDS-P-canaliculata_contig1009:16913..17120	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig1009 16914..17120 -
1693494149.7319381-CDS-P-canaliculata_contig1009:16913..17120	1693494149.7319381-CDS-P-canaliculata_contig1009:16913..17120	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig1009 16914..17120 -
1622815582.3752258-CDS-P-canaliculata_contig1009:17628..17751	1622815582.3752258-CDS-P-canaliculata_contig1009:17628..17751	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig1009 17629..17751 -
1693494149.741973-CDS-P-canaliculata_contig1009:17628..17751	1693494149.741973-CDS-P-canaliculata_contig1009:17628..17751	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig1009 17629..17751 -
1622815582.3879766-CDS-P-canaliculata_contig1009:18286..18487	1622815582.3879766-CDS-P-canaliculata_contig1009:18286..18487	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig1009 18287..18487 -
1693494149.7534192-CDS-P-canaliculata_contig1009:18286..18487	1693494149.7534192-CDS-P-canaliculata_contig1009:18286..18487	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig1009 18287..18487 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-canaliculata_contig1009:15465..18487-
coding sequence from alignment at P-canaliculata_contig1009:15465..18487-

protein sequence of mRNA_P-canaliculata_contig1009.168.1

>prot_P-canaliculata_contig1009.168.1 ID=prot_P-canaliculata_contig1009.168.1|Name=mRNA_P-canaliculata_contig1009.168.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=225bp
KVSIPRAYAWTASFAARLETASGPKFDAGMADGGTRGGDPSGGGCSNPAT
DGVYVYVWDACGMRVHKIGTGFHGTLPGNVYCSSGKIVDSIRDYKGMTPA
SESRHGPQEGGSEAVEPTRRRATGFAGLDVEGGADGAGDGTSDEDEKYNE
GSSGDDDSKEDDDNEEEDDNDDDDGDDAGNTEGVMDATASAANSDEQGGV
RPAQGSSSPSWLSDPSYGAPPAEST

mRNA from alignment at P-canaliculata_contig1009:15465..18487-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-canaliculata_contig1009.168.1 ID=mRNA_P-canaliculata_contig1009.168.1|Name=mRNA_P-canaliculata_contig1009.168.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=3023bp|location=Sequence derived from alignment at P-canaliculata_contig1009:15465..18487- (Pelvetia canaliculata dioecious)
AAGGTATCGATCCCCAGGGCCTACGCGTGGACTGCATCGTTCGCAGCCCG
CCTTGAGACAGCTTCTGGACCCAAGTTCGACGCTGGCATGGCAGACGGAG
GAACCAGGGGAGGCGATCCTTCGGGCGGGGGATGCTCCAACCCGGCCACG
GACGGAGTGTACGTTTACGTGTGGGATGCGTGTGGGATGCGGGTGCATAA
GGTGTGAGGATTTACAATTCAGGCGTGCGGTATGCTTTTATTATCGTTAC
AAAAGAGCAAATCAGTTACTCTCAGAAATAAGTTGCAATCGTATTACATC
AACAAGGGAAGGGGAGGAGGGAAATACAGTAAACGTATTGCAAGCGAAGC
ACCAAATGCATGCAACGCCAAGATACCCTCCGACAGCATTTTTCTTGCGC
TGAAATCGCGTTTGTACTCGTTGCAAACAACAGTGGTGACTGAACCTGTA
ACTTATAATGAAATCAACGGTAGCGTGAGCGGTAGCAGTGACAATCTCAA
GTGCGGACATCTATATCGGGTATCATTTCGGGGTGGCGGTCTTGACGGGC
TGCGAGGTCTCAATCAAGGGGCGACGGTTTGTCTGCGGCCCTTTTGGTTA
TATTTGTTTTTGGCCTCTAATTGGTTACTCTGGCAAAGCTGCAGGCGCCT
CTACGTACGAACCCGGTACAACGCCCAAAGTGTAATCAAGCGGCGCAATT
TCATTTTATTTTTTGTGCCTCTTGGCCCTTGTTCAGATCGGGACGGGTTT
CCACGGAACCTTGCCCGGAAACGTGTACTGCTCGAGCGGGAAAATCGTCG
ATAGTATCAGAGACTATAAGGGTATGACACCGGCATCCGAATCACGGCAT
GGCCCACAGGCGAGAATCGGTTTCAAGAGAGAAAGTCACATTGGTTTTGT
TGGAGTTGCAATGGCGTTTTCAGTAGCTGGATGAGGTGGGGTCGAGGTCA
TCGCTGACTTTGAGTTGGGCCTGTACGGGATATCGAGGGAGGGAGACAAC
TAAATTGCAGTTCCACGATTAGAGAGCTTGCTGCGTACGCGTGCGAGAGA
AGAGTTGACCTGTGACGTCACGCGCGAGCCGTTTACTTGGCATCATGGCA
CGGTTGCACGATATGGACTGTTGCTCCGCCGCAATCAATTTGCTTTCTCT
CTCCCTATGCTAGAGCCTATTCTTGAGAGTGACTCGAGCACAGGACCCTG
CCGCTTCGATCGAAACAAAAATACCGTAGGTTTTTGCGTTTCTGTGCTGT
ACTGCTGTACTGCTGTGCACTCGCAACCCAGAAAGTCTTGCGTGCTCCAC
GTATGCTGTAAATTGTGTGCATCCTGGTTACACCTTGAGATGTCGGTATT
TTTTCTTTATGCTTCAGGAGGGCGGCTCGGAGGCGGTGGAACCGACCCGG
CGGCGAGCGACGGGCTTTGCGGGTTTGGACGTCGAGGGAGGTGCTGACGG
CGCTGGGGACGGGACGAGTGATGAAGACGAAAAATATAATGAAGGAAGTA
GTGGAGATGATGATAGCAAAGAAGATGATGATAATGAAGAAGAGGATGAT
AATGATGATGATGACGGTGACGATGTGAGTGGTAGGATGTCTAGGGTGGC
GTTTGAGCACGCGGAAAGGCGTTGGATTGGGTTGCACCTTACTGTGCAAC
ACTCCTGTAGTGCTTTGCAAGTTACAGCACTGCACTGTACATTAAGGTAC
ATGCTGTTCAGACAACTGGAAGGCTATTGAAGGTACTCTTTGTAAGATAT
GTATTGTGTAAGGAACTTGCCTATAACTTGCCGCAAAAAATAGATCTAAC
CATGGAGGGTAGCTCCAACGTGGAATGGCCGATAGAAGAGCGTCGGACGG
GGAAGCCTCTCGGTGGGGGGTCTGCAAGCGAAGGGCGCTTAAGCACCGCC
TTTTCGTACTTAAGTGTCGCACTAATTTTTTGTATGATGAACCGAAACCG
AGAGGGTAAGCAATGGAGGGAATCAGACCCCCGAGATGTATAGACCCAAC
GCAAGCTCAACCGGAGTGAATAAAGAACCAGTCCAATCCAGCCCCAATCT
GTCTCGCCCCACGGGATATATGTAGGTGTATTTCGGCACTGCAAAGGGCT
ATAGAGCAGAGCCTGGATGTCGAATGCTCTGGCAATCGTGAAACTACAGC
TTCTCCGCTCCAATCCGAATTCTGCGCTCGTTCGGATTCGCGCCAGCGCC
AGCCGAATTGCACGTCTCTCCTCGAATCGATCTAATCCATCTAATCGATC
TTGGGACGATCTGATGGATTATCTTTGGCAAACTATGCGACGCGGTAGCC
GAAACTTCCGAAGGGATACGGTAAACGTCACAAGAGAAAAAACGAAACTA
CGCATCCATCTGTTGTTGCATTGTGATGGAACAAGTGGTTTAAAATGGTG
CGCGCTGCCATGGAAAACTTTAGATCGTGCGCAGTTTAGAGCAGCCGGGT
CGACGCCTCATCAGTTTTTTTTTTCGTTTTTTTTTTCTACTTGCTAATCT
TGCGTTTTCCTTCACCCACGTGTAATTCATGTTCTCTTTTGGGGGGTTCC
TTGCTTTTTTCCTTGTTTCATGTTCAATTTTCCCCCCCAGGCTGGTAACA
CCGAAGGCGTAATGGACGCGACAGCATCTGCAGCGAACAGCGATGAACAG
GGAGGGTGAGTCTTGAAGCAAAACAATTTTCCCCCTTTGCCCTACTCGGA
AAAATGGACCTATTAACTATTAATAGCACTAATACTTTTAACAGAACGAT
GTAGACTACGGCACCCTGCAAATACAGCAGTAGCTTGTCACGTTTGTGTT
ATTTCTAGTCTAATGAATTTAGTCTTGTCTTGTTTCCTGTTTTATTTTAT
TTCATTTATTTCGTTCCTTCATTTCTCTCTCTTCTTTTTAGTTGTTTGAC
CTTGCTGTATCCGACCCGCGCGTACGTGCTTGCGTTCCGGCAGGGTCCGC
CCTGCGCAAGGCTCATCGTCGCCCTCATGGCTGTCGGATCCATCGTACGG
CGCACCTCCTGCCGAGTCCACGG

Coding sequence (CDS) from alignment at P-canaliculata_contig1009:15465..18487-

>mRNA_P-canaliculata_contig1009.168.1 ID=mRNA_P-canaliculata_contig1009.168.1|Name=mRNA_P-canaliculata_contig1009.168.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1350bp|location=Sequence derived from alignment at P-canaliculata_contig1009:15465..18487- (Pelvetia canaliculata dioecious)
AAGGTATCGATCCCCAGGGCCTACGCGTGGACTGCATCGTTCGCAGCCCG
CCTTGAGACAGCTTCTGGACCCAAGTTCGACGCTGGCATGGCAGACGGAG
GAACCAGGGGAGGCGATCCTTCGGGCGGGGGATGCTCCAACCCGGCCACG
GACGGAGTGTACGTTTACGTGTGGGATGCGTGTGGGATGCGGGTGCATAA
GAAGGTATCGATCCCCAGGGCCTACGCGTGGACTGCATCGTTCGCAGCCC
GCCTTGAGACAGCTTCTGGACCCAAGTTCGACGCTGGCATGGCAGACGGA
GGAACCAGGGGAGGCGATCCTTCGGGCGGGGGATGCTCCAACCCGGCCAC
GGACGGAGTGTACGTTTACGTGTGGGATGCGTGTGGGATGCGGGTGCATA
AGATCGGGACGGGTTTCCACGGAACCTTGCCCGGAAACGTGTACTGCTCG
AGCGGGAAAATCGTCGATAGTATCAGAGACTATAAGGGTATGACACCGGC
ATCCGAATCACGGCATGGCCCACAGATCGGGACGGGTTTCCACGGAACCT
TGCCCGGAAACGTGTACTGCTCGAGCGGGAAAATCGTCGATAGTATCAGA
GACTATAAGGGTATGACACCGGCATCCGAATCACGGCATGGCCCACAGGA
GGGCGGCTCGGAGGCGGTGGAACCGACCCGGCGGCGAGCGACGGGCTTTG
CGGGTTTGGACGTCGAGGGAGGTGCTGACGGCGCTGGGGACGGGACGAGT
GATGAAGACGAAAAATATAATGAAGGAAGTAGTGGAGATGATGATAGCAA
AGAAGATGATGATAATGAAGAAGAGGATGATAATGATGATGATGACGGTG
ACGATGAGGGCGGCTCGGAGGCGGTGGAACCGACCCGGCGGCGAGCGACG
GGCTTTGCGGGTTTGGACGTCGAGGGAGGTGCTGACGGCGCTGGGGACGG
GACGAGTGATGAAGACGAAAAATATAATGAAGGAAGTAGTGGAGATGATG
ATAGCAAAGAAGATGATGATAATGAAGAAGAGGATGATAATGATGATGAT
GACGGTGACGATGCTGGTAACACCGAAGGCGTAATGGACGCGACAGCATC
TGCAGCGAACAGCGATGAACAGGGAGGGCTGGTAACACCGAAGGCGTAAT
GGACGCGACAGCATCTGCAGCGAACAGCGATGAACAGGGAGGGGTCCGCC
CTGCGCAAGGCTCATCGTCGCCCTCATGGCTGTCGGATCCATCGTACGGC
GCACCTCCTGCCGAGTCCACGGGTCCGCCCTGCGCAAGGCTCATCGTCGC
CCTCATGGCTGTCGGATCCATCGTACGGCGCACCTCCTGCCGAGTCCACG