Homology
BLAST of mRNA_P-canaliculata_contig1009.166.1 vs. uniprot
Match:
D7G0G0_ECTSI (ILEI domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0G0_ECTSI)
HSP 1 Score: 95.1 bits (235), Expect = 1.170e-20
Identity = 59/102 (57.84%), Postives = 78/102 (76.47%), Query Frame = 3
Query: 6 PFPAMTTDSRHLILV--HASEVKAEETETXXXXXXXXXXRRS-RSLEIMFLDPEDGYRLVRTASLPWNVDESALHRSALVCDGDRLVMLEPQNVGRMLQRTA 302
PFPAMTTDSRH+ILV S + ++ T XXXXXX S R LE++FLDPEDGYRLVRTA+L W +DE+ LH++A++CDG+RLVML ++ G +++RTA
Sbjct: 1171 PFPAMTTDSRHIILVCPAGSGQEGDDPSTAAXXXXXXGDGDSPRRLEMLFLDPEDGYRLVRTATLAWGMDETELHQNAVLCDGERLVMLTHRHSG-VVKRTA 1271
BLAST of mRNA_P-canaliculata_contig1009.166.1 vs. uniprot
Match:
A0A6H5K114_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K114_9PHAE)
HSP 1 Score: 93.6 bits (231), Expect = 4.060e-20
Identity = 49/95 (51.58%), Postives = 64/95 (67.37%), Query Frame = 3
Query: 6 PFPAMTTDSRHLILVHASEVKAEETE---TXXXXXXXXXXRRSRSLEIMFLDPEDGYRLVRTASLPWNVDESALHRSALVCDGDRLVMLEPQNVG 281
PFPAMTTDSRH+ILV +E E + R LE++FLDPEDGYRLVRTA+L W +DE+ LH++A++CDG+RLVML ++ G
Sbjct: 1015 PFPAMTTDSRHIILVCPAEGGQEGDDPNIAAAAATALGDDDSPRRLELLFLDPEDGYRLVRTATLAWGMDETDLHQNAMLCDGERLVMLTHRDSG 1109
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig1009.166.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.17e-20 / Id = 57.84 Expect = 4.06e-20 / Id = 51.58 Sequence D7G0G0_ECTSI A0A6H5K114_9PHAE
Match Name E-value Identity Description
D7G0G0_ECTSI 1.170e-20 57.84 ILEI domain-containing protein n=1 Tax=Ectocarpus ... [more] A0A6H5K114_9PHAE 4.060e-20 51.58 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 86.7 Seed ortholog evalue 6.6e-15 Seed eggNOG ortholog 2880.D7G0G0 KEGG ko ko:K21991 EggNOG free text desc. guanyl-nucleotide exchange factor activity EggNOG OGs COG5184@1,KOG1426@2759 COG Functional cat. DZ Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko03110 Hectar predicted targeting category other localisation Exons 2 Model size 303 Cds size 285 Stop 0 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815582.4883277-CDS-P-canaliculata_contig1009:7661..7839 1622815582.4883277-CDS-P-canaliculata_contig1009:7661..7839 Pelvetia canaliculata dioecious CDS P-canaliculata_contig1009 7662..7839 - 1693494149.793659-CDS-P-canaliculata_contig1009:7661..7839 1693494149.793659-CDS-P-canaliculata_contig1009:7661..7839 Pelvetia canaliculata dioecious CDS P-canaliculata_contig1009 7662..7839 - 1622815582.5013103-CDS-P-canaliculata_contig1009:8869..8976 1622815582.5013103-CDS-P-canaliculata_contig1009:8869..8976 Pelvetia canaliculata dioecious CDS P-canaliculata_contig1009 8870..8976 - 1693494149.8150556-CDS-P-canaliculata_contig1009:8869..8976 1693494149.8150556-CDS-P-canaliculata_contig1009:8869..8976 Pelvetia canaliculata dioecious CDS P-canaliculata_contig1009 8870..8976 -
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815582.5126586-UTR-P-canaliculata_contig1009:8976..8993 1622815582.5126586-UTR-P-canaliculata_contig1009:8976..8993 Pelvetia canaliculata dioecious UTR P-canaliculata_contig1009 8977..8993 - 1693494149.8233693-UTR-P-canaliculata_contig1009:8976..8993 1693494149.8233693-UTR-P-canaliculata_contig1009:8976..8993 Pelvetia canaliculata dioecious UTR P-canaliculata_contig1009 8977..8993 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig1009.166.1
>prot_P-canaliculata_contig1009.166.1 ID=prot_P-canaliculata_contig1009.166.1|Name=mRNA_P-canaliculata_contig1009.166.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=95bp
MTTDSRHLILVHASEVKAEETETEAETEAQEEARRSRSLEIMFLDPEDGY back to top mRNA from alignment at P-canaliculata_contig1009:7662..8993-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig1009.166.1 ID=mRNA_P-canaliculata_contig1009.166.1|Name=mRNA_P-canaliculata_contig1009.166.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1332bp|location=Sequence derived from alignment at P-canaliculata_contig1009:7662..8993- (Pelvetia canaliculata dioecious)CGTCGCCATTCCCGGCG ATGACCACGGACTCTCGGCACTTAATACTCGTA
CATGCGTCGGAAGTCAAAGCGGAAGAAACGGAAACAGAAGCGGAAACGGA
GGCGCAGGAGGAGGCGCGGCGCAG GTGAAAAAGTGACACCTGGTATGTTT
TTTTTGTGTTCAAGCAGACATACCTCCGATAACTTCTGTATCACACAACA
TGCCCACTTTATACCAATAATGGGTGTGGGAAAAGAGAGGCGCACACTAA
TTGGTCCATGGTGAGACGTGCAAGGGCAGCATGCGTTACTGGAACTACTT
CGAGGACTACTGGCTCTGTGCCGGCAGACTCTCGGCAGTGAACGTCATCG
CTACGCAATTGCGTGACCTGATAAACTCGAGGCTAGCCCGATGGCGGTCG
ACGGCATAAATAGACGCCGTCGTGGAAAGCGGGAGGAATCCCGTGAGAAA
GCACCAGATCCAGCCTGAGTATAAAGAATGAGTAGGCTAACGCCGGACGG
GACGGCCGAATCTGTCTCGCGAGACCAAATTCTCAGGCCCGAACGGGGAA
AAAAAAACATTGTCCCTGTTGAACTGACCACGAGCAGGATTGGCCTTACT
CGGTCGATCTATACCTTGCTTTCAGTAATGATCATACCACACACATACTG
TGCGGAGGAGGGCTATTGAATCAAATAATTGTGCGCCTGGTTGGTTGGAT
GGATGCCGGCACAGCTCTCTCTCTCTCCCGCTCAAATTGATCAAATTAAT
GTATGATGATTGCCAACCGGACTTTGAAACGTATACATTCTTCCATGTCT
CCGTGTCTCCACCGGTACGCTCCGGTCGTTCCAATATTTTTTTCACTTTT
TTGACGACGCCGGAGATGAAAAGAAAAACTATTAACAGTAGCAGTAGTGT
AAACTTGCGTACTTCCACATGCACTCGCTCATCCTCCTGCTGTTCCGCCT
TTTTACGACCTCGTCCAAAAAAATAATATCAAAACGGCAGCAGGCCTTCG
ATCGCTAGACACGCTAGAGACGCTCTTGTCACACCCCCGACTCCCAAAGT
TGACTTTTTTGTTTTCGTTTCCCATCTGTCGCCCCTGCCCTCGTCCATGT
TACCGTACTCGTATCGTACCGTATTGTATTGTAATGTATTGTATTCGTGA
ATAGTCGAAGCCTTGAGATTATGTTCCTAGACCCAGAAGATGGGTACCGG
CTGGTGCGCACGGCGAGCCTTCCCTGGAACGTGGACGAATCTGCCCTACA
CAGGAGCGCTCTCGTATGCGACGGCGATCGCCTGGTGATGCTCGAGCCTC
AGAACGTTGGACGAATGCTGCAGAGGACGGCA back to top Coding sequence (CDS) from alignment at P-canaliculata_contig1009:7662..8993-
>mRNA_P-canaliculata_contig1009.166.1 ID=mRNA_P-canaliculata_contig1009.166.1|Name=mRNA_P-canaliculata_contig1009.166.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at P-canaliculata_contig1009:7662..8993- (Pelvetia canaliculata dioecious) back to top