mRNA_P-canaliculata_contig100801.157.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig100801.157.1 vs. uniprot
Match: A0A518DCV8_9BACT (SASA domain-containing protein n=1 Tax=Pirellulimonas nuda TaxID=2528009 RepID=A0A518DCV8_9BACT) HSP 1 Score: 108 bits (270), Expect = 5.660e-24 Identity = 64/176 (36.36%), Postives = 94/176 (53.41%), Query Frame = 1 Query: 73 PILIKNHSFEVDGGADGEFSVGDVTGWVKSGRSTGWLNVSTEFYSNTDVVDTSPSGGTYADMDGKRVFFFAANGNRFITQTLESNIKVGQQYRLTIAVGNRDASTRQGFAGYDIRLSAGGTVVATETSTVPPGSGTFTDVELVYTARAGDSGELGIFIGTLNASSSSALEVDNVRL 600
P+ I N SFE +D + V+GW+KSG G N Y + +D + GG M+G + + QTL + ++ G Y+LT+A+G+RDA GFAG I L AGG V+ + GTFTDV + YTA AGD+G LG+ + L+ + ++++ DNVRL
Sbjct: 254 PLQITNPSFETPARSDDAVNPAIVSGWIKSGGVIGTFNPGGGAYLDASALDAN--GGVVGAMEGTHALSMTG-ADASVEQTLSAAVRAGTTYKLTVAIGDRDAGGSPGFAGARIELLAGGQVLTDSGAITGLADGTFTDVSISYTAGAGDAGALGVRLVALDGAGGTSVDFDNVRL 426
BLAST of mRNA_P-canaliculata_contig100801.157.1 vs. uniprot
Match: UPI000786128F (tandem-95 repeat protein n=1 Tax=Endozoicomonas arenosclerae TaxID=1633495 RepID=UPI000786128F) HSP 1 Score: 56.6 bits (135), Expect = 7.790e-6 Identity = 58/183 (31.69%), Postives = 85/183 (46.45%), Query Frame = 1 Query: 76 ILIKNHSFEVDG-GADGEFSVGDVTG-WVKSGRSTGWLNVSTEFYSNTDVVDTSPSG--GTYADMDGKRVFFFAANGNRFITQTLESNIKVGQQYRLTIAVGNRDASTRQGFAGYDIRLSAGGTVVATETSTVPPGSGTFTDVELVYT--ARAGDSGELGI-FIGTLNASSSSALEVDNVRLT 603
++I +HSFE DG F + W SG + G N Y+N + + + G + + DG I+QTL N Y+L + +GNR + +GFA Y++R+ AGG V+A++ S V P G F + L A A DS +G + L+ S L DNVRLT
Sbjct: 5228 VVINDHSFESQSLTTDGAFVHQPTSSSWTFSGANDGIHN-----YNNNGLNEPATKGINAGFLNTDGT------------ISQTLVENFDRSISYQLQVDIGNR---SNEGFADYEVRIKAGGVVLASDGS-VTPAEGEFDTLTLNLNGAAIAADSAAIGQPLVIELHKISGPQLVFDNVRLT 5389
BLAST of mRNA_P-canaliculata_contig100801.157.1 vs. uniprot
Match: A0A081KG95_9GAMM (Uncharacterized protein n=1 Tax=Endozoicomonas elysicola TaxID=305900 RepID=A0A081KG95_9GAMM) HSP 1 Score: 55.5 bits (132), Expect = 1.920e-5 Identity = 40/136 (29.41%), Postives = 64/136 (47.06%), Query Frame = 1 Query: 61 STASPILIKNHSFEVDGGADGEFSVGDVTG-WVKSGRSTGWLNVSTEFYSNTDVVDTSPSGGTYADMDGKRVFFFAANGNRFITQTLESNIKVGQQYRLTIAVGNRDASTRQGFAGYDIRLSAGGTVVATETSTVP 465
+T+ + I +HSFE DGE + W S +G N + + + +P G +A N N ++QTL + QY+L + +GNR S GFA Y++R++AGG V+A++ S P
Sbjct: 1511 ATSRNVTIADHSFESVTLIDGEPVLNPAASPWSFSSTHSGIWNPT-----SGQITQEAPDGNNIG---------YATNDNETLSQTLSESFSNDTQYQLQVEIGNR--SDTAGFANYEVRITAGGVVLASDGSVSP 1630
BLAST of mRNA_P-canaliculata_contig100801.157.1 vs. uniprot
Match: A0A552KMW5_9CHRO (PEP-CTERM sorting domain-containing protein n=2 Tax=Microcystis TaxID=1125 RepID=A0A552KMW5_9CHRO) HSP 1 Score: 53.9 bits (128), Expect = 2.700e-5 Identity = 60/184 (32.61%), Postives = 85/184 (46.20%), Query Frame = 1 Query: 28 AIALSTLLA---GVSTASPILIKNHSFEV----DGGADGEFSVGDVTGWVKSGRST-GWLNVSTEFYSNTDVVD-------TSPSGGTYADMDGKRVFFFAANGNRFITQTLESNIKVGQQYRLTIAVGNRDASTRQGFAGYDIRLSAGGTVVATETSTVPPGSGTFTDVELVYTARAGDSGEL 534
AIA S L+ G A+ I I NHSFE D + +G W +G S G++N DV T P+G A +G + ++ +T+TL++N K Y L + VG+R FAGY+I L AG TV+A+ S + P + TF V + YT+ G SG L
Sbjct: 24 AIASSCLMIVPQGQVRAASIFIANHSFEAPIITDPSGILDTGIGTTGNWTFAGASARGFINPG---LGENDVPGFWYGPSPTLPNGNQVAWSNGGTI-------SQTLTETLQANTK----YTLGVYVGHRQ---NVAFAGYNIELLAGATVLASNNS-ITPAAETFAPVTVSYTS--GSSGSL 187 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100801.157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100801.157.1 >prot_P-canaliculata_contig100801.157.1 ID=prot_P-canaliculata_contig100801.157.1|Name=mRNA_P-canaliculata_contig100801.157.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=205bp MKINKKTFSAIALSTLLAGVSTASPILIKNHSFEVDGGADGEFSVGDVTGback to top mRNA from alignment at P-canaliculata_contig100801:37..651- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig100801.157.1 ID=mRNA_P-canaliculata_contig100801.157.1|Name=mRNA_P-canaliculata_contig100801.157.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=615bp|location=Sequence derived from alignment at P-canaliculata_contig100801:37..651- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig100801:37..651- >mRNA_P-canaliculata_contig100801.157.1 ID=mRNA_P-canaliculata_contig100801.157.1|Name=mRNA_P-canaliculata_contig100801.157.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1230bp|location=Sequence derived from alignment at P-canaliculata_contig100801:37..651- (Pelvetia canaliculata dioecious)back to top |