mRNA_P-canaliculata_contig100800.156.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig100800.156.1
Unique NamemRNA_P-canaliculata_contig100800.156.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig100800.156.1 vs. uniprot
Match: A0A2S0MMC5_9RHOB (ABC transporter permease n=1 Tax=Pukyongiella litopenaei TaxID=2605946 RepID=A0A2S0MMC5_9RHOB)

HSP 1 Score: 479 bits (1233), Expect = 1.830e-168
Identity = 257/292 (88.01%), Postives = 278/292 (95.21%), Query Frame = 1
Query:    1 QSVAITGILALGVTCTLVVDGFDLSIGSVATSALMLSAYSMVILEQSALVAVLLCLAMGALVGLINGLLIVKYKVPDLLATLGMMFLLIGLQRIPTQGNSISSGMRLPDGSTADGNFSAAFLYIGRHRFDLFLEKLVPVPVVLFLLIALLVWIFLEFTRHGRMMYAIGSNEKAASLVGANVNRYKVVAYMISGVTASIGGILLAARLGRGDIASGNNLLLDSVAAALIGFAVFGAARANAFGTAIGALFVGILLQGLTMMNAPYYTQDFVKGVILVGALVFTFHLSARRSAG 876
            QSVAITGILALGVTCTLVVDGFDLSIGSVATSALMLSAY+MVILE  A+VAVLLCLAMGALVGL+NGLLIVK+KVPDLLATLGMMFLLIGLQRIPTQGNSI++GM LPDGS A+G+FSAAFL+IGRHRFD+ LE+LVPVPVVLFLLIAL +W+FL FTRHGR+MYAIGSNE+AA+LVG NVNRYK+VAYMISGV AS+GGILLAARLGRGDIASGNNLLLDSVAAALIGFAV GAAR NAFGTA+GALFVGILLQGLTMMNAPYYTQDFVKGV+LV ALVFTF+LSARR  G
Sbjct:   44 QSVAITGILALGVTCTLVVDGFDLSIGSVATSALMLSAYAMVILEYPAVVAVLLCLAMGALVGLVNGLLIVKFKVPDLLATLGMMFLLIGLQRIPTQGNSIATGMSLPDGSVAEGSFSAAFLWIGRHRFDVVLERLVPVPVVLFLLIALAIWVFLGFTRHGRLMYAIGSNERAAALVGTNVNRYKIVAYMISGVMASVGGILLAARLGRGDIASGNNLLLDSVAAALIGFAVLGAARPNAFGTAVGALFVGILLQGLTMMNAPYYTQDFVKGVVLVVALVFTFYLSARRGTG 335          
BLAST of mRNA_P-canaliculata_contig100800.156.1 vs. uniprot
Match: A0A4P7JE05_9RHOB (ABC transporter permease n=3 Tax=Rhodobacteraceae TaxID=31989 RepID=A0A4P7JE05_9RHOB)

HSP 1 Score: 475 bits (1223), Expect = 6.080e-167
Identity = 254/295 (86.10%), Postives = 280/295 (94.92%), Query Frame = 1
Query:    1 QSVAITGILALGVTCTLVVDGFDLSIGSVATSALMLSAYSMVILEQSALVAVLLCLAMGALVGLINGLLIVKYKVPDLLATLGMMFLLIGLQRIPTQGNSISSGMRLPDGSTADGNFSAAFLYIGRHRFDLFLEKLVPVPVVLFLLIALLVWIFLEFTRHGRMMYAIGSNEKAASLVGANVNRYKVVAYMISGVTASIGGILLAARLGRGDIASGNNLLLDSVAAALIGFAVFGAARANAFGTAIGALFVGILLQGLTMMNAPYYTQDFVKGVILVGALVFTFHLSARRSAGRKS 885
            QSVAITGILALGVTCTLVVDGFDLSIGSVAT+ALMLSAY+MVILE SA+ AVLLCL MGA+VGLINGLLIVK+KVPDLLATLGMMFLLIGLQRIPTQGNSI++GM L DGSTA+G FSAAFL++GRHRFDLF+++LVPVPVV+FL+ A+++W+FLE TRHGRMMYAIGSNE+AA+LVGANVNRYK+ AYMISGVTAS+GGILLAARLGRGDIASGNNLLLDSVAAALIGFAV GAARANAFGTAIGALFVGILLQGLTMMNAPYYTQDFVKG +LV ALVFTF+LSA+R  G KS
Sbjct:   44 QSVAITGILALGVTCTLVVDGFDLSIGSVATTALMLSAYAMVILELSAVSAVLLCLLMGAVVGLINGLLIVKFKVPDLLATLGMMFLLIGLQRIPTQGNSIATGMSLTDGSTAEGTFSAAFLWLGRHRFDLFVDRLVPVPVVIFLITAVVIWVFLELTRHGRMMYAIGSNERAAALVGANVNRYKIAAYMISGVTASVGGILLAARLGRGDIASGNNLLLDSVAAALIGFAVLGAARANAFGTAIGALFVGILLQGLTMMNAPYYTQDFVKGAVLVLALVFTFYLSAKRRTGGKS 338          
BLAST of mRNA_P-canaliculata_contig100800.156.1 vs. uniprot
Match: A0A0N0E7D8_9HYPH (Sugar ABC transporter permease n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A0N0E7D8_9HYPH)

HSP 1 Score: 473 bits (1216), Expect = 7.070e-166
Identity = 253/295 (85.76%), Postives = 279/295 (94.58%), Query Frame = 1
Query:    1 QSVAITGILALGVTCTLVVDGFDLSIGSVATSALMLSAYSMVILEQSALVAVLLCLAMGALVGLINGLLIVKYKVPDLLATLGMMFLLIGLQRIPTQGNSISSGMRLPDGSTADGNFSAAFLYIGRHRFDLFLEKLVPVPVVLFLLIALLVWIFLEFTRHGRMMYAIGSNEKAASLVGANVNRYKVVAYMISGVTASIGGILLAARLGRGDIASGNNLLLDSVAAALIGFAVFGAARANAFGTAIGALFVGILLQGLTMMNAPYYTQDFVKGVILVGALVFTFHLSARRSAGRKS 885
            QSVAITGILALGVTCTLVVDGFDLSIGSVATSALMLSAYSMV+LEQ A VAVLLCL MGA+VGL+NGLLIVK KVPDLLATLGMMFLLIGLQRIPTQGNSI++GM L DGSTA+G FSAAFL++GRHRFDL LE+LVPVPVV+FLL+AL VWIFLE+TRHGR+MYAIGSN++AA LVGANV+RYK++AY+ISGVTASIGGILLAARLGRGDIASGNNLLLDSVAAALIGFAV GAAR NAFGTAIGALFVGILLQG+TM+NAPYYTQDFVKG +LV ALVFTF+LS++ SA RK+
Sbjct:   44 QSVAITGILALGVTCTLVVDGFDLSIGSVATSALMLSAYSMVVLEQPAYVAVLLCLVMGAVVGLVNGLLIVKMKVPDLLATLGMMFLLIGLQRIPTQGNSIATGMSLADGSTAEGTFSAAFLWLGRHRFDLVLERLVPVPVVIFLLVALAVWIFLEYTRHGRLMYAIGSNQRAAELVGANVHRYKIMAYVISGVTASIGGILLAARLGRGDIASGNNLLLDSVAAALIGFAVLGAARPNAFGTAIGALFVGILLQGMTMLNAPYYTQDFVKGAVLVCALVFTFYLSSKSSAARKA 338          
BLAST of mRNA_P-canaliculata_contig100800.156.1 vs. uniprot
Match: UPI0013A6D5A3 (ABC transporter permease n=1 Tax=Lentilitoribacter sp. Alg239-R112 TaxID=2305987 RepID=UPI0013A6D5A3)

HSP 1 Score: 468 bits (1205), Expect = 3.340e-164
Identity = 251/294 (85.37%), Postives = 273/294 (92.86%), Query Frame = 1
Query:    1 QSVAITGILALGVTCTLVVDGFDLSIGSVATSALMLSAYSMVILEQSALVAVLLCLAMGALVGLINGLLIVKYKVPDLLATLGMMFLLIGLQRIPTQGNSISSGMRLPDGSTADGNFSAAFLYIGRHRFDLFLEKLVPVPVVLFLLIALLVWIFLEFTRHGRMMYAIGSNEKAASLVGANVNRYKVVAYMISGVTASIGGILLAARLGRGDIASGNNLLLDSVAAALIGFAVFGAARANAFGTAIGALFVGILLQGLTMMNAPYYTQDFVKGVILVGALVFTFHLSARRSAGRK 882
            QSVAITGILALGVTCTLVVDGFDLSIGSVATSALMLSAY+MVILEQ A VAV+LCLAMGALVGLINGLLIVK KVPDLLATLGMMFLLIGLQRIPTQGNSI++GM L DG+ A+G FS AFL++GRHRFD FLE+LVPVPVV+F+L+A+ +WIFLEFTRHGR+MYAIGSN++AA LVGANV  YK+ AYMISGVTASIGGILLAARLGRGDIASGNNLLLDSVAA LIGFAV GAAR NAFGTAIGALFVGILLQG+TMMNAPYYTQDFVKG +LV ALVFTF+LS+R  AGRK
Sbjct:   44 QSVAITGILALGVTCTLVVDGFDLSIGSVATSALMLSAYTMVILEQPAYVAVILCLAMGALVGLINGLLIVKMKVPDLLATLGMMFLLIGLQRIPTQGNSIATGMNLGDGNVAEGTFSQAFLWLGRHRFDFFLERLVPVPVVIFILVAIGIWIFLEFTRHGRLMYAIGSNQRAAELVGANVEHYKIAAYMISGVTASIGGILLAARLGRGDIASGNNLLLDSVAAGLIGFAVLGAARPNAFGTAIGALFVGILLQGMTMMNAPYYTQDFVKGAVLVCALVFTFYLSSRHMAGRK 337          
BLAST of mRNA_P-canaliculata_contig100800.156.1 vs. uniprot
Match: A0A6L6WBJ8_9RHOB (ABC transporter permease n=2 Tax=Rhodobacterales TaxID=204455 RepID=A0A6L6WBJ8_9RHOB)

HSP 1 Score: 464 bits (1193), Expect = 2.240e-162
Identity = 251/294 (85.37%), Postives = 275/294 (93.54%), Query Frame = 1
Query:    1 QSVAITGILALGVTCTLVVDGFDLSIGSVATSALMLSAYSMVILEQSALVAVLLCLAMGALVGLINGLLIVKYKVPDLLATLGMMFLLIGLQRIPTQGNSISSGMRLPDGSTADGNFSAAFLYIGRHRFDLFLEKLVPVPVVLFLLIALLVWIFLEFTRHGRMMYAIGSNEKAASLVGANVNRYKVVAYMISGVTASIGGILLAARLGRGDIASGNNLLLDSVAAALIGFAVFGAARANAFGTAIGALFVGILLQGLTMMNAPYYTQDFVKGVILVGALVFTFHLSARRS-AGR 879
            QSVAITGILALGVT TLVVDGFDLSIGSVATS+LMLSAYSMVILE SALV VLLCL MGALVGL+NGLLIVK +VPDLLATLGMMFLLIGLQRIPTQGNSI++GMRLPDGS A+G F+A FL+IGRHRFD+F+EKL P+PVV+FLL+A+ VW+FL FTRHGR+MYAIGSN++AA LVG NV+RYKV+AYMISGV AS+GGILLAARLGRGDIASGNNLLLDSVAAALIGFAV GAAR NAFGTAIGALFVGILLQGLTMMNAPYYTQDFVKG +LV ALVFTF+LS+RRS AGR
Sbjct:   44 QSVAITGILALGVTSTLVVDGFDLSIGSVATSSLMLSAYSMVILEYSALVTVLLCLTMGALVGLVNGLLIVKMRVPDLLATLGMMFLLIGLQRIPTQGNSIATGMRLPDGSIAEGTFAAEFLWIGRHRFDMFIEKLFPMPVVVFLLVAVAVWLFLGFTRHGRLMYAIGSNQRAAELVGTNVSRYKVLAYMISGVLASVGGILLAARLGRGDIASGNNLLLDSVAAALIGFAVLGAARPNAFGTAIGALFVGILLQGLTMMNAPYYTQDFVKGAVLVAALVFTFYLSSRRSSAGR 337          
BLAST of mRNA_P-canaliculata_contig100800.156.1 vs. uniprot
Match: A0A0M7A2S1_9HYPH (Ribose transport system permease protein RbsC n=15 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A0M7A2S1_9HYPH)

HSP 1 Score: 460 bits (1184), Expect = 5.060e-161
Identity = 247/293 (84.30%), Postives = 271/293 (92.49%), Query Frame = 1
Query:    1 QSVAITGILALGVTCTLVVDGFDLSIGSVATSALMLSAYSMVILEQSALVAVLLCLAMGALVGLINGLLIVKYKVPDLLATLGMMFLLIGLQRIPTQGNSISSGMRLPDGSTADGNFSAAFLYIGRHRFDLFLEKLVPVPVVLFLLIALLVWIFLEFTRHGRMMYAIGSNEKAASLVGANVNRYKVVAYMISGVTASIGGILLAARLGRGDIASGNNLLLDSVAAALIGFAVFGAARANAFGTAIGALFVGILLQGLTMMNAPYYTQDFVKGVILVGALVFTFHLSARRSAGR 879
            QSVAITGILALGVTCTLVV GFDLSIGSVATSALMLSAY+MVILEQSA VAV +CL MGALVGL+NGLLIVK +VPDLLATLGMMFLLIGLQRIPTQGNSI++GM L DGS A+G FSAAFL++GRHRFDLFL++LVPVPVV+FLLIALL+W+FL +TRHGR+MYAIGSNE+AA LVG NV+RYK+VAYMISG+ AS+GGILLAARLGRGDIASGNNLLLDSVAAALIGFAV GAAR NAFGTA GALFVGILLQGLTMMNAPYY QDFVKG +LV ALVFTF+LS+RR   R
Sbjct:   43 QSVAITGILALGVTCTLVVGGFDLSIGSVATSALMLSAYTMVILEQSAFVAVAVCLLMGALVGLVNGLLIVKMRVPDLLATLGMMFLLIGLQRIPTQGNSIATGMSLEDGSVAEGTFSAAFLWLGRHRFDLFLDRLVPVPVVVFLLIALLIWLFLGYTRHGRLMYAIGSNERAAGLVGTNVHRYKIVAYMISGMLASVGGILLAARLGRGDIASGNNLLLDSVAAALIGFAVLGAARPNAFGTAAGALFVGILLQGLTMMNAPYYMQDFVKGAVLVAALVFTFYLSSRRGGRR 335          
BLAST of mRNA_P-canaliculata_contig100800.156.1 vs. uniprot
Match: A0A1M7L8F6_9HYPH (Monosaccharide ABC transporter membrane protein, CUT2 family n=2 Tax=Roseibium suaedae TaxID=735517 RepID=A0A1M7L8F6_9HYPH)

HSP 1 Score: 459 bits (1181), Expect = 1.730e-160
Identity = 247/295 (83.73%), Postives = 269/295 (91.19%), Query Frame = 1
Query:    1 QSVAITGILALGVTCTLVVDGFDLSIGSVATSALMLSAYSMVILEQSALVAVLLCLAMGALVGLINGLLIVKYKVPDLLATLGMMFLLIGLQRIPTQGNSISSGMRLPDGSTADGNFSAAFLYIGRHRFDLFLEKLVPVPVVLFLLIALLVWIFLEFTRHGRMMYAIGSNEKAASLVGANVNRYKVVAYMISGVTASIGGILLAARLGRGDIASGNNLLLDSVAAALIGFAVFGAARANAFGTAIGALFVGILLQGLTMMNAPYYTQDFVKGVILVGALVFTFHLSARRSAGRKS 885
            QSVAITGILALGVTCTLVV GFDLSIGSVATS+LMLSAYSMV+LEQSA VAV LCL MGA+VGLINGLLIVK KVPDLLATLGMMFLLIGLQRIPTQGNS+++GM L DGS ADG FS AFL++GRHRFDLFL++L+PVPVV+FL IAL++W+FL FTRHGR+MYAIGSNE+AASLVG NV RYK+ AYMISGV ASIGGILLAARLGRGDIASGNNLLLDSVAAALIGFAV GAAR NAFGTA GALFVGILLQGLTMMNAPYY QDFVKG +LV ALVFTF+LS+RR   R +
Sbjct:   48 QSVAITGILALGVTCTLVVGGFDLSIGSVATSSLMLSAYSMVVLEQSAFVAVALCLVMGAVVGLINGLLIVKMKVPDLLATLGMMFLLIGLQRIPTQGNSVATGMSLSDGSVADGVFSEAFLWLGRHRFDLFLDRLLPVPVVIFLAIALIIWLFLGFTRHGRLMYAIGSNERAASLVGTNVQRYKIAAYMISGVLASIGGILLAARLGRGDIASGNNLLLDSVAAALIGFAVLGAARPNAFGTAAGALFVGILLQGLTMMNAPYYMQDFVKGAVLVAALVFTFYLSSRRGGRRNA 342          
BLAST of mRNA_P-canaliculata_contig100800.156.1 vs. uniprot
Match: A8LNV6_DINSH (Ribose/xylose/arabinose/galactoside ABC-type transport system protein n=5 Tax=Roseobacteraceae TaxID=2854170 RepID=A8LNV6_DINSH)

HSP 1 Score: 456 bits (1172), Expect = 3.270e-159
Identity = 243/290 (83.79%), Postives = 271/290 (93.45%), Query Frame = 1
Query:    1 QSVAITGILALGVTCTLVVDGFDLSIGSVATSALMLSAYSMVILEQSALVAVLLCLAMGALVGLINGLLIVKYKVPDLLATLGMMFLLIGLQRIPTQGNSISSGMRLPDGSTADGNFSAAFLYIGRHRFDLFLEKLVPVPVVLFLLIALLVWIFLEFTRHGRMMYAIGSNEKAASLVGANVNRYKVVAYMISGVTASIGGILLAARLGRGDIASGNNLLLDSVAAALIGFAVFGAARANAFGTAIGALFVGILLQGLTMMNAPYYTQDFVKGVILVGALVFTFHLSARRS 870
            QSVAITGILALGVTCTLVV GFDLSIG+VATSALMLSAYSMVILE  A+VAVLLCLAMGALVG INGLLIVK++VPDLLATLGMMFLLIGLQRIPTQGNSI++GM L DG+ A+G FSAAFL++GRHRFD+ +E+L+P+PVV+F+ IA+L+W+FL FTRHGR+MYAIGSNE+AA LVG  VNRYK+ AYMISGVTASIGGILLAARLGRGDIASGNNLLLDSVAAALIGFAV GAAR NAFGTA+GALFVGILLQG+TMMNAPYYTQDFVKG +LV ALVFTF+LS+RRS
Sbjct:   43 QSVAITGILALGVTCTLVVGGFDLSIGAVATSALMLSAYSMVILEHPAIVAVLLCLAMGALVGFINGLLIVKFRVPDLLATLGMMFLLIGLQRIPTQGNSIATGMTLSDGTVAEGTFSAAFLWLGRHRFDVVIERLLPMPVVIFVGIAVLIWLFLGFTRHGRLMYAIGSNERAAGLVGTPVNRYKIAAYMISGVTASIGGILLAARLGRGDIASGNNLLLDSVAAALIGFAVLGAARPNAFGTAMGALFVGILLQGMTMMNAPYYTQDFVKGAVLVAALVFTFYLSSRRS 332          
BLAST of mRNA_P-canaliculata_contig100800.156.1 vs. uniprot
Match: UPI00131B8523 (ABC transporter permease n=3 Tax=Rhodobacteraceae TaxID=31989 RepID=UPI00131B8523)

HSP 1 Score: 456 bits (1172), Expect = 3.390e-159
Identity = 245/294 (83.33%), Postives = 270/294 (91.84%), Query Frame = 1
Query:    1 QSVAITGILALGVTCTLVVDGFDLSIGSVATSALMLSAYSMVILEQSALVAVLLCLAMGALVGLINGLLIVKYKVPDLLATLGMMFLLIGLQRIPTQGNSISSGMRLPDGSTADGNFSAAFLYIGRHRFDLFLEKLVPVPVVLFLLIALLVWIFLEFTRHGRMMYAIGSNEKAASLVGANVNRYKVVAYMISGVTASIGGILLAARLGRGDIASGNNLLLDSVAAALIGFAVFGAARANAFGTAIGALFVGILLQGLTMMNAPYYTQDFVKGVILVGALVFTFHLSARRSAGRK 882
            QSVAITGILALGVTCTLVVDGFDLSIGSVATS+LMLSAY+MV+LE SA  A+LLCL MGA VGL+NGLLIVK+KVPDLLATLGMMFLLIGLQRIPTQGNS+++GM LPDGSTA+G FS AFL++GRHR D FLE L+PVPVV+FLLIA+ +W+FL FTR GR+MYAIGSNE+AA LVG  VNRYK++AYMISGV ASIGGILLAARLGRGDIASG NLLLDSVAAALIGFAV GAAR NAFGTA+GALFVGILLQGLTMMNAPYYTQDFVKG +LV ALVFTF+LS+RRSAG K
Sbjct:   44 QSVAITGILALGVTCTLVVDGFDLSIGSVATSSLMLSAYAMVVLELSAGSAILLCLLMGAFVGLVNGLLIVKFKVPDLLATLGMMFLLIGLQRIPTQGNSVATGMALPDGSTAEGTFSPAFLWLGRHRMDFFLENLLPVPVVIFLLIAVGIWLFLGFTRQGRLMYAIGSNERAAELVGTPVNRYKIMAYMISGVMASIGGILLAARLGRGDIASGTNLLLDSVAAALIGFAVLGAARPNAFGTAVGALFVGILLQGLTMMNAPYYTQDFVKGAVLVIALVFTFYLSSRRSAGGK 337          
BLAST of mRNA_P-canaliculata_contig100800.156.1 vs. uniprot
Match: A0A4Y6S4D1_9HYPH (ABC transporter permease n=1 Tax=Labrenzia sp. PHM005 TaxID=2590016 RepID=A0A4Y6S4D1_9HYPH)

HSP 1 Score: 454 bits (1167), Expect = 1.950e-158
Identity = 244/295 (82.71%), Postives = 271/295 (91.86%), Query Frame = 1
Query:    1 QSVAITGILALGVTCTLVVDGFDLSIGSVATSALMLSAYSMVILEQSALVAVLLCLAMGALVGLINGLLIVKYKVPDLLATLGMMFLLIGLQRIPTQGNSISSGMRLPDGSTADGNFSAAFLYIGRHRFDLFLEKLVPVPVVLFLLIALLVWIFLEFTRHGRMMYAIGSNEKAASLVGANVNRYKVVAYMISGVTASIGGILLAARLGRGDIASGNNLLLDSVAAALIGFAVFGAARANAFGTAIGALFVGILLQGLTMMNAPYYTQDFVKGVILVGALVFTFHLSARRSAGRKS 885
            QSVAITGILALGVTCTLVV GFDLSIG+VATSALMLSAYSMVILEQ A VAVLLCL MGA VG ING+LIVK++VPDLLATLGMMFLLIGLQRIPTQGNSI++GM LP+GS A+G+FS AFL++GRHRFDL L++LVPVPVV+F+LIA+L+W++L FTRHGR+ YAIGSNE+AA+LVG  VN YK+ AYMISGVTASIGGILLAARLGRGDIASGNNLLLDSVAAALIGFAV GAAR NAFGTAIGALFVGILLQG+TMMNAPYYTQDFVKG +LV ALVFTF+LSARR+    S
Sbjct:   43 QSVAITGILALGVTCTLVVGGFDLSIGAVATSALMLSAYSMVILEQPAYVAVLLCLLMGAAVGFINGVLIVKFRVPDLLATLGMMFLLIGLQRIPTQGNSIATGMALPNGSVAEGSFSQAFLWLGRHRFDLVLDRLVPVPVVIFILIAILIWLYLGFTRHGRLKYAIGSNERAAALVGTPVNTYKITAYMISGVTASIGGILLAARLGRGDIASGNNLLLDSVAAALIGFAVLGAARPNAFGTAIGALFVGILLQGMTMMNAPYYTQDFVKGAVLVLALVFTFYLSARRAGSGHS 337          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100800.156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2S0MMC5_9RHOB1.830e-16888.01ABC transporter permease n=1 Tax=Pukyongiella lito... [more]
A0A4P7JE05_9RHOB6.080e-16786.10ABC transporter permease n=3 Tax=Rhodobacteraceae ... [more]
A0A0N0E7D8_9HYPH7.070e-16685.76Sugar ABC transporter permease n=3 Tax=Alphaproteo... [more]
UPI0013A6D5A33.340e-16485.37ABC transporter permease n=1 Tax=Lentilitoribacter... [more]
A0A6L6WBJ8_9RHOB2.240e-16285.37ABC transporter permease n=2 Tax=Rhodobacterales T... [more]
A0A0M7A2S1_9HYPH5.060e-16184.30Ribose transport system permease protein RbsC n=15... [more]
A0A1M7L8F6_9HYPH1.730e-16083.73Monosaccharide ABC transporter membrane protein, C... [more]
A8LNV6_DINSH3.270e-15983.79Ribose/xylose/arabinose/galactoside ABC-type trans... [more]
UPI00131B85233.390e-15983.33ABC transporter permease n=3 Tax=Rhodobacteraceae ... [more]
A0A4Y6S4D1_9HYPH1.950e-15882.71ABC transporter permease n=1 Tax=Labrenzia sp. PHM... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100800contigP-canaliculata_contig100800:1..894 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score471.1
Seed ortholog evalue3.9e-130
Seed eggNOG ortholog1380380.JIAX01000012_gene560
Preferred namerbsC3
KEGG koko:K02057,ko:K10440,ko:K17214
KEGG TC3.A.1.2,3.A.1.2.1,3.A.1.2.13,3.A.1.2.19
KEGG Pathwayko02010,map02010
KEGG ModuleM00212,M00221,M00593
EggNOG free text desc.Ribose xylose arabinose galactoside ABC-type transport systems permease components
EggNOG OGs1NB7E@1224,2U0TT@28211,COG1172@1,COG1172@2
COG Functional cat.G
Best tax levelAlphaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000
Hectar predicted targeting categorysignal peptide
Exons1
Model size894
Cds size894
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.76378-CDS-P-canaliculata_contig100800:0..8941622815581.76378-CDS-P-canaliculata_contig100800:0..894Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100800 1..894 +
1693494149.4685256-CDS-P-canaliculata_contig100800:0..8941693494149.4685256-CDS-P-canaliculata_contig100800:0..894Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100800 1..894 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100800.156.1prot_P-canaliculata_contig100800.156.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig100800 1..894 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig100800.156.1

>prot_P-canaliculata_contig100800.156.1 ID=prot_P-canaliculata_contig100800.156.1|Name=mRNA_P-canaliculata_contig100800.156.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=298bp
QSVAITGILALGVTCTLVVDGFDLSIGSVATSALMLSAYSMVILEQSALV
AVLLCLAMGALVGLINGLLIVKYKVPDLLATLGMMFLLIGLQRIPTQGNS
ISSGMRLPDGSTADGNFSAAFLYIGRHRFDLFLEKLVPVPVVLFLLIALL
VWIFLEFTRHGRMMYAIGSNEKAASLVGANVNRYKVVAYMISGVTASIGG
ILLAARLGRGDIASGNNLLLDSVAAALIGFAVFGAARANAFGTAIGALFV
GILLQGLTMMNAPYYTQDFVKGVILVGALVFTFHLSARRSAGRKSRS*
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mRNA from alignment at P-canaliculata_contig100800:1..894+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100800.156.1 ID=mRNA_P-canaliculata_contig100800.156.1|Name=mRNA_P-canaliculata_contig100800.156.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=894bp|location=Sequence derived from alignment at P-canaliculata_contig100800:1..894+ (Pelvetia canaliculata dioecious)
CAATCGGTTGCAATAACAGGCATTCTCGCCCTTGGCGTCACCTGTACACT GGTTGTTGACGGATTCGATCTATCAATAGGCTCTGTAGCCACGTCGGCTT TAATGTTGTCAGCCTATTCGATGGTGATACTTGAACAATCCGCACTGGTG GCCGTGTTGCTGTGTCTGGCCATGGGCGCTCTTGTGGGACTGATCAACGG ACTGCTCATTGTTAAATACAAGGTGCCAGATTTACTGGCAACGCTTGGCA TGATGTTCCTGCTGATAGGTCTGCAGCGCATCCCCACGCAAGGCAACTCC ATATCCAGTGGCATGCGTCTGCCGGACGGCTCTACCGCAGATGGTAATTT TTCGGCAGCGTTTCTGTATATCGGTCGCCATCGTTTCGATTTGTTTCTTG AAAAACTGGTTCCCGTTCCTGTCGTGCTGTTCCTGCTCATTGCATTACTG GTCTGGATATTTCTGGAATTCACACGACATGGCCGTATGATGTATGCCAT CGGCTCAAACGAAAAGGCCGCATCACTGGTGGGTGCCAACGTTAACAGAT ACAAGGTTGTTGCGTACATGATCTCTGGAGTCACAGCTTCAATCGGCGGC ATATTGCTGGCTGCCCGTCTTGGCCGCGGTGATATAGCCAGCGGCAATAA TCTGCTGCTCGACAGCGTTGCTGCGGCACTTATCGGCTTTGCCGTTTTTG GTGCGGCAAGAGCGAATGCTTTCGGTACAGCCATAGGTGCGCTGTTTGTT GGCATACTATTGCAGGGGCTAACTATGATGAATGCACCCTATTACACACA GGATTTTGTTAAAGGGGTGATCCTGGTAGGTGCCTTGGTCTTTACCTTTC ACCTGAGCGCGCGTCGAAGCGCCGGTAGAAAATCCAGATCCTGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig100800:1..894+

>mRNA_P-canaliculata_contig100800.156.1 ID=mRNA_P-canaliculata_contig100800.156.1|Name=mRNA_P-canaliculata_contig100800.156.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1788bp|location=Sequence derived from alignment at P-canaliculata_contig100800:1..894+ (Pelvetia canaliculata dioecious)
CAATCGGTTGCAATAACAGGCATTCTCGCCCTTGGCGTCACCTGTACACT
GGTTGTTGACGGATTCGATCTATCAATAGGCTCTGTAGCCACGTCGGCTT
TAATGTTGTCAGCCTATTCGATGGTGATACTTGAACAATCCGCACTGGTG
GCCGTGTTGCTGTGTCTGGCCATGGGCGCTCTTGTGGGACTGATCAACGG
ACTGCTCATTGTTAAATACAAGGTGCCAGATTTACTGGCAACGCTTGGCA
TGATGTTCCTGCTGATAGGTCTGCAGCGCATCCCCACGCAAGGCAACTCC
ATATCCAGTGGCATGCGTCTGCCGGACGGCTCTACCGCAGATGGTAATTT
TTCGGCAGCGTTTCTGTATATCGGTCGCCATCGTTTCGATTTGTTTCTTG
AAAAACTGGTTCCCGTTCCTGTCGTGCTGTTCCTGCTCATTGCATTACTG
GTCTGGATATTTCTGGAATTCACACGACATGGCCGTATGATGTATGCCAT
CGGCTCAAACGAAAAGGCCGCATCACTGGTGGGTGCCAACGTTAACAGAT
ACAAGGTTGTTGCGTACATGATCTCTGGAGTCACAGCTTCAATCGGCGGC
ATATTGCTGGCTGCCCGTCTTGGCCGCGGTGATATAGCCAGCGGCAATAA
TCTGCTGCTCGACAGCGTTGCTGCGGCACTTATCGGCTTTGCCGTTTTTG
GTGCGGCAAGAGCGAATGCTTTCGGTACAGCCATAGGTGCGCTGTTTGTT
GGCATACTATTGCAGGGGCTAACTATGATGAATGCACCCTATTACACACA
GGATTTTGTTAAAGGGGTGATCCTGGTAGGTGCCTTGGTCTTTACCTTTC
ACCTGAGCGCGCGTCGAAGCGCCGGTAGAAAATCCAGATCCTGACAATCG
GTTGCAATAACAGGCATTCTCGCCCTTGGCGTCACCTGTACACTGGTTGT
TGACGGATTCGATCTATCAATAGGCTCTGTAGCCACGTCGGCTTTAATGT
TGTCAGCCTATTCGATGGTGATACTTGAACAATCCGCACTGGTGGCCGTG
TTGCTGTGTCTGGCCATGGGCGCTCTTGTGGGACTGATCAACGGACTGCT
CATTGTTAAATACAAGGTGCCAGATTTACTGGCAACGCTTGGCATGATGT
TCCTGCTGATAGGTCTGCAGCGCATCCCCACGCAAGGCAACTCCATATCC
AGTGGCATGCGTCTGCCGGACGGCTCTACCGCAGATGGTAATTTTTCGGC
AGCGTTTCTGTATATCGGTCGCCATCGTTTCGATTTGTTTCTTGAAAAAC
TGGTTCCCGTTCCTGTCGTGCTGTTCCTGCTCATTGCATTACTGGTCTGG
ATATTTCTGGAATTCACACGACATGGCCGTATGATGTATGCCATCGGCTC
AAACGAAAAGGCCGCATCACTGGTGGGTGCCAACGTTAACAGATACAAGG
TTGTTGCGTACATGATCTCTGGAGTCACAGCTTCAATCGGCGGCATATTG
CTGGCTGCCCGTCTTGGCCGCGGTGATATAGCCAGCGGCAATAATCTGCT
GCTCGACAGCGTTGCTGCGGCACTTATCGGCTTTGCCGTTTTTGGTGCGG
CAAGAGCGAATGCTTTCGGTACAGCCATAGGTGCGCTGTTTGTTGGCATA
CTATTGCAGGGGCTAACTATGATGAATGCACCCTATTACACACAGGATTT
TGTTAAAGGGGTGATCCTGGTAGGTGCCTTGGTCTTTACCTTTCACCTGA
GCGCGCGTCGAAGCGCCGGTAGAAAATCCAGATCCTGA
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