Homology
BLAST of mRNA_P-canaliculata_contig100797.154.1 vs. uniprot
Match: A0A6H5KWX2_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWX2_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 1.680e-19 Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1 Query: 10 LGGTGAATTVIFDPVANGKSVLAVAAVQDPRVIEWYPGGVIWLRAGRAAIGRLLRMIELAIHQV 201
+G G ATTVIFD VANGKSVLA AA+QDPRV +PGGVIWLRAG +A RLLRM+ELA+ QV
Sbjct: 15 MGVIGGATTVIFDSVANGKSVLAAAAMQDPRVQAAFPGGVIWLRAGHSADDRLLRMMELAVCQV 78
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Tetratricopeptide-like helical domain |
| Ec32 ortholog | Ec-07_000970.1 |
| Exons | 2 |
| Model size | 203 |
| Cds size | 201 |
| Stop | 0 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815581.669568-CDS-P-canaliculata_contig100797:98..231 | 1622815581.669568-CDS-P-canaliculata_contig100797:98..231 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig100797 99..231 - |
| 1693494149.434891-CDS-P-canaliculata_contig100797:98..231 | 1693494149.434891-CDS-P-canaliculata_contig100797:98..231 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig100797 99..231 - |
| 1622815581.6842542-CDS-P-canaliculata_contig100797:425..493 | 1622815581.6842542-CDS-P-canaliculata_contig100797:425..493 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig100797 426..493 - |
| 1693494149.4426208-CDS-P-canaliculata_contig100797:425..493 | 1693494149.4426208-CDS-P-canaliculata_contig100797:425..493 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig100797 426..493 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100797.154.1 >prot_P-canaliculata_contig100797.154.1 ID=prot_P-canaliculata_contig100797.154.1|Name=mRNA_P-canaliculata_contig100797.154.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=67bp
DLELGGTGAATTVIFDPVANGKSVLAVAAVQDPRVIEWYPGGVIWLRAGR
AAIGRLLRMIELAIHQV back to topmRNA from alignment at P-canaliculata_contig100797:99..493- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-canaliculata_contig100797.154.1 ID=mRNA_P-canaliculata_contig100797.154.1|Name=mRNA_P-canaliculata_contig100797.154.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=395bp|location=Sequence derived from alignment at P-canaliculata_contig100797:99..493- (Pelvetia canaliculata dioecious)
GACCTGGAGTTGGGCGGTACTGGCGCGGCAACCACCGTGATTTTCGACCC
CGTAGCAAACGGCAAAAGGTGCGTGAACCCGGGAAATGGGCCTAAAATGT
ACTTCAGGTGCGCGTTCGCCTTGCGGCCTCATGCCCAGTGGGGATTGAAT
CCCAAACGTCTTGGGTGGTATTTCAATTGCAACCATAAGTCTAGGTGTGA
ATTGCCGCTTCGTGCCTGCGCAAAAACACGTGAACACTACTGCCTATGCT
GTCGGTTCGTAGTGTTCTTGCGGTGGCAGCCGTGCAGGATCCTCGCGTAA
TTGAGTGGTATCCCGGGGGCGTGATCTGGCTTCGAGCCGGTAGAGCCGCG
ATCGGTCGCTTGTTGCGGATGATCGAGCTCGCCATCCACCAGGTG back to topCoding sequence (CDS) from alignment at P-canaliculata_contig100797:99..493- >mRNA_P-canaliculata_contig100797.154.1 ID=mRNA_P-canaliculata_contig100797.154.1|Name=mRNA_P-canaliculata_contig100797.154.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at P-canaliculata_contig100797:99..493- (Pelvetia canaliculata dioecious)
GACCTGGAGTTGGGCGGTACTGGCGCGGCAACCACCGTGATTTTCGACCC
CGTAGCAAACGGCAAAAGGACCTGGAGTTGGGCGGTACTGGCGCGGCAAC
CACCGTGATTTTCGACCCCGTAGCAAACGGCAAAAGTGTTCTTGCGGTGG
CAGCCGTGCAGGATCCTCGCGTAATTGAGTGGTATCCCGGGGGCGTGATC
TGGCTTCGAGCCGGTAGAGCCGCGATCGGTCGCTTGTTGCGGATGATCGA
GCTCGCCATCCACCAGGTGTGTTCTTGCGGTGGCAGCCGTGCAGGATCCT
CGCGTAATTGAGTGGTATCCCGGGGGCGTGATCTGGCTTCGAGCCGGTAG
AGCCGCGATCGGTCGCTTGTTGCGGATGATCGAGCTCGCCATCCACCAGG
TG back to top
|