mRNA_P-canaliculata_contig100749.149.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig100749.149.1 vs. uniprot
Match: UPI001A548729 (Uncharacterized protein n=1 Tax=Verrucomicrobiaceae bacterium R5-34 TaxID=2800420 RepID=UPI001A548729) HSP 1 Score: 263 bits (673), Expect = 8.560e-82 Identity = 139/335 (41.49%), Postives = 204/335 (60.90%), Query Frame = 1 Query: 7 DLAFPEGEVSGPITTGD-SNYFVYVPTSLRKDRKAPLLFFTGATGGKAKSCRQFIEGAEIAGWIIAASVESENGNDFPEGNFAHVEACYDDLMNKLPIDKKRVYFAGDSGGGVMALLNCDRLKGAGAMPNIAYLLKGSRLLRQAHY-YVMGGAWDFNRYLSAQIRAEAGENGFHRFNKNGHGGASVVQSNDAILWLNARYL-EAQESGDFAAEKMDFNRSLLDWLRKIKDKQPHRAYYWANF-------DREAAPAFANLADELGKDPVSVKYAEGLDALDSFSRDILATEGEDQGSLKKHTSEKVNREADKLIGTYAGVPEIEDIAKALKHPTA 981 D P GE SGPI G+ SNY++YVP +LRKDR PL+ +T A GGK + ++ GAE+ GWIIA+ VES+NG PEGN+ H + C++ L+ LPID++R+YF+GDSGGG MA N R++ AG MP +AY + + ++ HY Y +GGA DFNRY +A+ A+ G+ G HRF K GH + ++WLN +L + ++ + +++DF +L++W++++ ++ PHRAYYW +F + + A L L KDP + +Y EGL+ALD FS D T + SL + +N+ +KL Y GVP IE I+ L P A Sbjct: 96 DFPHPVGEASGPIEAGNGSNYYIYVPKTLRKDRPVPLMIYTSAGGGKERVVNRYKLGAELNGWIIASPVESKNGPSHPEGNYKHSKQCFEHLIATLPIDQERIYFSGDSGGGAMAFYNAMRIQSAGIMPFVAYSPENN--YKKKHYCYSIGGASDFNRYSTARAAAQYGKRGIHRFVKGGHTNGPEEAGVEGMVWLNGMHLADTRKDSELDDDRLDFESTLINWIKELTEETPHRAYYWCDFLVNHYEIEGKNASLVGPLMKALEKDPNNARYVEGLEALDDFS-DKYFTSAQGASSLPR-----INKALEKLSEKYIGVPYIEMISLELAKPMA 422
BLAST of mRNA_P-canaliculata_contig100749.149.1 vs. uniprot
Match: UPI00167505DF (SHD1 domain-containing protein n=1 Tax=Roseibacillus persicicus TaxID=454148 RepID=UPI00167505DF) HSP 1 Score: 246 bits (627), Expect = 3.920e-75 Identity = 138/332 (41.57%), Postives = 191/332 (57.53%), Query Frame = 1 Query: 7 DLAFPEGEVSGPITTGDSNYFVYVPTSLRKDRKAPLLFFTGATGGKAKSCRQFIEGAEIAGWIIAASVESENGNDFPEGNFAHVEACYDDLMNKLPIDKKRVYFAGDSGGGVMALLNCDRLKGAGAMPNIAY-LLKGSRLLRQAHYYVMGGAWDFNRYLSAQIRAEAGENGFHRFNKNGHGGASVVQSNDAILWLNARYLEAQESGDFAAEKMDFNRSLLDWLRKIKDKQPHRAYYWANF---DREAAPAFANLAD----ELGKDPVSVKYAEGLDALDSFSRDILATEGEDQGSLKKHTSEKVNREADKLIGTYAGVPEIEDIAKALKHPT 978 +L P G GPI +S+YF+Y+P SL R+APLLFFTG+ GG K ++I+ AE+ GWI+A S E+ N + + HV AC L LP+D R+YF G SGGG A++N KGAGA+P I + +L G + + HYY +GGA D+NRY +A R G N FHRF+ GH D +LWLNAR+ + + ++A + DF R+LLD+L + D HRA+ +F D E + A + AD +L +P + Y E L LD S L+ G G+LKKHTS+KV+REA +L Y G+ EI I + L+ PT Sbjct: 80 NLPHPLGRAVGPIKAENSHYFLYLPKSLVAGRRAPLLFFTGSGGGNLKMLDRYIQAAEVGGWIVAVSKETRNN----QNSLPHVLACMKHLETTLPVDSNRLYFTGASGGGQRAMMNAAGYKGAGAIPIIYHGILDGEEVPSKGHYYFIGGAQDYNRYGTAAARKNLGRNAFHRFHPGGHNNGPDTLVQDGMLWLNARFYASTKDREYAEQASDFERNLLDFLEGLPDGASHRAFMLLSFIRDDYEISSANQSRADALFSKLQSNPQNALYLEALADLDELSEKDLSEHG--VGTLKKHTSKKVSREAARLRDKYPGLHEIPSILENLQKPT 405
BLAST of mRNA_P-canaliculata_contig100749.149.1 vs. uniprot
Match: A0A858RG89_9BACT (Uncharacterized protein n=1 Tax=Luteolibacter luteus TaxID=2728835 RepID=A0A858RG89_9BACT) HSP 1 Score: 236 bits (601), Expect = 3.910e-71 Identity = 125/331 (37.76%), Postives = 186/331 (56.19%), Query Frame = 1 Query: 1 ATDLAFPEGEVSGPITTGDSNYFVYVPTSLRKDRKAPLLFFTGATGGKAKSCRQFIEGAEIAGWIIAASVESENGNDFPEGNFAHVEACYDDLMNKLPIDKKRVYFAGDSGGGVMALLNCDRLKGAGAMPNIAYLLKGSRLLRQAHYYVMGGAWDFNRYLSAQIRAEAGENGFHRFNKNGHGGASVVQSNDAILWLNARYLEAQESGDFAAEKMDFNRSLLDWLRKIKDKQPHRAYYWANFDREAAPAFANLAD-----ELGKDPVSVKYAEGLDALDSFSRDILATEGEDQGSLKKHTSEKVNREADKLIGTYAGVPEIEDIAKALKHPT 978 A DL P+GE SGPI G S YFVY+P SL+ RK PLLF+T + GG + EGAEI GW++A SVES+N D PE N H + C + L LP+D+KR+YF G+SGG MA N +L GAG + IA K L + HY+ + GA+D+NRY ++ +E + RF+ GH + ++WL +Y +++ + + D+ ++LDW+ K+K + +RA +WA F RE+ AN + +L +P + YA+GL L+ F+ L+T + +HTSE++ REA L T+ P ++DI + L T Sbjct: 86 APDLGHPQGETSGPIDAGGSKYFVYLPKSLKGGRKYPLLFYTASGGGSKDTLNALTEGAEICGWVVACSVESKNETD-PEKNHEHAKKCVEHLKKTLPLDEKRIYFGGNSGGARMAFTNASKLDGAGVLAQIAGA-KPDELKKGNHYFFISGAYDYNRYGTSASYSEVARSAALRFHPGGHDNGPDWLVTEGLVWLEGQY--QRKAKEETPARADYEAAVLDWIAKLKTTEDYRAAWWAGFLRESGVMAANESALGAYADLTAEPANAAYADGLSKLEEFAAMTLSTGPQSAPDCFEHTSEEIQREAKALQETFGNTPRVKDIIEGLLKKT 412
BLAST of mRNA_P-canaliculata_contig100749.149.1 vs. uniprot
Match: A0A4P6PB55_9BACT (SHD1 domain-containing protein n=1 Tax=Verrucomicrobia bacterium S94 TaxID=2488809 RepID=A0A4P6PB55_9BACT) HSP 1 Score: 230 bits (586), Expect = 9.600e-69 Identity = 137/334 (41.02%), Postives = 191/334 (57.19%), Query Frame = 1 Query: 7 DLAFPEGEVSGPITT-GDSNYFVYVPTSLRKDRKAPLLFFTGATGGK-AKSCRQFIEGAEIAGWIIAASVESENGNDFPEGNFAHVEACYDDLMNKLPIDKKRVYFAGDSGGGVMALLNCDRLKGAGAMPNIAYLLKGSRLLRQAHYYVMGGAWDFNRYLSAQIRAEAGENGFHRFNKNGHGGASVVQSNDAILWLNARYLEAQESGDFAA-EKMDFNRSLLDWLRKIKDKQPHRAYYWANFDRE---AAPAFANLAD----ELGKDPVSVKYAEGLDALDSFSRDILATEGEDQGSLKKHTSEKVNREADKLIGTYAGVPEIEDIAKALKHPT 978 DL + +GEV GPI S+Y++Y+P SL RKAPLLF+T ++ + A+ + I AEI GW++A SVES N N N D +++ LP+DKKR+YF G+SGGG M ++N ++ G MPN+ YL S + +V+ G D+NRY SA +R + G+ HRF+ GHG A D +LWL RYL E GD AA E+ D+ +L W+ ++PHRAYYWA F ++ +PA D ELG+ P + Y EGL +D+ S + L+ G QGSL H++ V E +KL+ Y GVP IED KA+ PT Sbjct: 93 DLPYKQGEVVGPIRAKSSSHYYLYLPESLTSTRKAPLLFYTHSSRPQDARLIEELITAAEINGWVMALSVESCNDNG-TSANLDTANKAVDHILDTLPVDKKRLYFTGNSGGGAMCMINGADMRACGLMPNVGYL-PSSAGKPKCDVFVINGGTDYNRYTSADMRKKIGKTAVHRFHGGGHGKAPAWLFQDGMLWLEGRYLA--EKGDKAAGERDDYIEALTAWINANTIREPHRAYYWAVFMKKQLNCSPAQNAALDAVISELGQAPENALYVEGLADIDNLSLNKLSKYG--QGSLYDHSNGAVESECEKLLRKYEGVPVIEDALKAIGSPT 420
BLAST of mRNA_P-canaliculata_contig100749.149.1 vs. uniprot
Match: UPI001A4C982F (Uncharacterized protein n=1 Tax=Verrucomicrobiaceae bacterium R5-34 TaxID=2800420 RepID=UPI001A4C982F) HSP 1 Score: 197 bits (501), Expect = 4.110e-56 Identity = 129/342 (37.72%), Postives = 177/342 (51.75%), Query Frame = 1 Query: 1 ATDLAFPEGEVSGPITTGD-SNYFVYVPTSLRKDRKAPLLFFTGATGGKAKSCRQFIEG----AEIAGWIIAASVESENGNDFPEGNFAHVEACYDDLMNKLPIDKKRVYFAGDSGGGVMALLNCDRLKGAGAMPNIAYLLKGSRLLRQAHYYVMGGAWDFNRYLSAQIRAEAGENGFHRFNKNGHGGASVVQSNDAILWLNARYLEAQESGDFAAEKMDFNRSLLDWLRKIKDKQPHRAYYWANFDREA-------APAFANLADELGKDPVSVKYAEGLDALDSFSRDILATEGEDQGSLKKHTSEKVNREADKLIGTYAGVPEIEDIAKALKHPTATLQ 990 A LA+P G++ GP+ G ++YFVY+P SL++DR APL+FF G K FI+G A+ GW++A SV S N + + N + D L LP+D+KRV++AG SGGG + +N G MP+ Y+L G + R Y +GG +DFNRY +A A +NGFHR + GH A+ D + W+ RYL Q+S + E DF R+ L WL+++++ RAY A RE A L EL K P + Y E L ALD FS LA G GS KV R +KL +Y +PEI I AL T +L+ Sbjct: 95 AEGLAYPLGQMQGPVDAGGGASYFVYLPKSLKQDRPAPLIFFCAPWGAKKPG---FIKGMTDVADRFGWVVALSVNSSNAHSMKK-NSDFCKKSLDHLFGTLPLDEKRVHYAGHSGGGAQSYVNASFRPAYGVMPSAGYVLYGVKP-RAEVVYAIGGGYDFNRYTTANAVAGFKKNGFHRISPKGHPRAANSYREDGVFWMACRYLGEQKS-EHLEEAKDFERAALIWLKELQESHSMRAYSNAVVFREYYQPEGHNGRALELLIKELEKTPDNKLYHEALHALDEFSDKYLA--GSVVGSAMNRVDPKVARGTEKLRESYGHIPEIAAILDALNKKTDSLK 428
BLAST of mRNA_P-canaliculata_contig100749.149.1 vs. uniprot
Match: A0A851GMS7_9BACT (SHD1 domain-containing protein n=1 Tax=Oceaniferula marina TaxID=2748318 RepID=A0A851GMS7_9BACT) HSP 1 Score: 127 bits (320), Expect = 6.530e-30 Identity = 98/313 (31.31%), Postives = 148/313 (47.28%), Query Frame = 1 Query: 1 ATDLAFPEGEVSGPITT-GDSNYFVYVPTSLRKDRKAPLLFFTGATGGKAKSCRQFIEGAEIAGWIIAASVESENGNDFPEGNFAHVEACYDDLMNKLPIDKKRVYFAGDSGGGVMALLNCDRLKGAGAMPNIAYLLKGSRLLRQAHYYVMGGAWDFNRY-LSAQIRAEAGENGFHRFNKNGHGGASVVQSNDAILWLNARYLEAQESGDFAAEKMDFNRSLLDWLRKIKDKQPHRAYYWANFDREAA---PAFANLADELGKDPVSVKYAEGLDALDSFSRDILATEGEDQGSLKKHTSEKVNREADKLIGT 924 A DL +P G+ + I GD +YF+Y+P SL K +K P+L+ GG + ++++ GAE GWI+A S +S+NG F + + A + D + LPIDK+RVY G SGG MA L R K + IA G R+ Y + G+ FNR ++ + + + R+ H A+ DAI LN +L +S D+A + + +L + + ++ P RAY WA+F E P D+LG D ++ Y EGL + F+ Q S RE+ K GT Sbjct: 98 ADDLPYPLGKTTAEIPCDGDFSYFLYLPKSLVKGKKYPVLYIMSPGGGGGGTAKRYVAGAERNGWILAVSKQSKNG--FNKSSDA-ITNMMDHVQASLPIDKERVYVTGFSGGSRMAYLISQRRKEVTGV--IACGAGGKIGSRKQVVYGLCGSNCFNRTDMANAFKGVSHKGAVLRYFPGRHAWANGELCEDAITHLNGVFLSDNKS-DYAEDYERYRHALGELIEGSRENNPLRAYMWADFAHEYDFDDPRAKKAYDDLGSDEMNKLYVEGLAGIRKFAEKTFGQISASQWKADPKVSSACERESRKYEGT 404
BLAST of mRNA_P-canaliculata_contig100749.149.1 vs. uniprot
Match: A0A6B3L0V8_9BACT (Uncharacterized protein n=1 Tax=Sulfuriroseicoccus oceanibius TaxID=2707525 RepID=A0A6B3L0V8_9BACT) HSP 1 Score: 104 bits (260), Expect = 1.610e-21 Identity = 84/319 (26.33%), Postives = 144/319 (45.14%), Query Frame = 1 Query: 7 DLAFPEGEVSGPITTGDS-NYFVYVPTSLRKDRKAPLLFFTGATGGKAKSCRQFIEGAEIAGWIIAASVESENGNDFPEGNFAHVEACYDDLMNKLPIDKKRVYFAGDSGGGVMALLNCDRLKGAGAMPNIA--YLLKGSRLLRQAHYYVMG--GAWDFNRYLSAQIRAE-AGENGFHRFNKNGHGGASVVQSNDAILWLNARYLEAQESGDFAAEKMDFNRSLLDWLRKIKDKQPHRAYYWANF--DREAAPA-----FANLADELGKDPVSVKYAEGLDALDSFSRDILATEGEDQGSLKKHTSEKVNREADKLIGT 924 +L +P G+++ I T + +Y+PTSLR D P+LF G+ + ++ + AE+ WI+A + +S N D+ + ++ + A + + LPID+KR+Y +G SGG + + AG + A K + H G G FNRY ++ A+ + RF H A DA++ LN + E Q + ++ F +L + + +PHRAY F DR FA L +L K+P + ++ +GL +D ++ + +E +L E + A+K GT Sbjct: 99 ELKYPLGKITDEIPTANGYTCRLYLPTSLRDDDAHPVLFIQDPGSGRVGTLNRYKKAAEMNRWILATTPQSSNKLDY-DASYKAIVAMMEFVKENLPIDEKRIYLSGFSGGSRYSFFTASQNDVAGIIACGAGSSCHKHGERVPDNHVVTYGLCGTNCFNRYDMSRSHAKMTNPDSVLRFFVGNHDWAGGALLEDAMVHLNGVFFE-QNGEAYPQQQARFEVDVLSVIESCLEAEPHRAYMLTQFMIDRGLTSGTRTTRFARLMRKLSKNPENQRFVDGLADMDKMAKKVCGSEYRSYKTLYPEVVEAGEKYAEKYAGT 415
BLAST of mRNA_P-canaliculata_contig100749.149.1 vs. uniprot
Match: A0A4P6PLW2_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium S94 TaxID=2488809 RepID=A0A4P6PLW2_9BACT) HSP 1 Score: 102 bits (253), Expect = 2.560e-21 Identity = 55/139 (39.57%), Postives = 84/139 (60.43%), Query Frame = 1 Query: 13 AFPEGEVSGPITTGD-SNYFVYVPTSLRKDRKAPLLFFTGATGGKAKSCRQFIEGAEIAGWIIAASVESENGNDFPEGNFAHVEACYDDLMNKLPIDKKRVYFAGDSGGGVMALLNCDRLKGAGAMPNIAYLLKG-SRL 423 A+ GE+ GP+ D S++++YVP SL R APL+ +TG TGGK + R+ I GAE+ GWI+A +VE + N + N ++ L+N P+D++R+YFAG S G ++ N + K G +P Y+ +G SRL Sbjct: 91 AYRRGEILGPLEAIDGSSFYLYVPKSLADIRSAPLMLYTGPTGGKLLNIRELINGAEVTGWIVAVAVEPDYYNSV-DVNRKICDSMVQTLLNTAPVDRRRLYFAGFSAGASVSYYNQNTWKACGLIPMSTYIPQGWSRL 228
BLAST of mRNA_P-canaliculata_contig100749.149.1 vs. uniprot
Match: A0A7X7VES1_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7X7VES1_9BACT) HSP 1 Score: 67.0 bits (162), Expect = 1.290e-8 Identity = 86/292 (29.45%), Postives = 126/292 (43.15%), Query Frame = 1 Query: 61 NYFVYVPTSLRKDRKAPLL--FFTGATGGKAKSCRQFIEGAEIAGWIIAASVESENGNDFPEGNFAHVEACYDDLMNKLPIDKKRVYFAGDSGGGVMALLNCDRLKG---AGAMPNIAYLLKGSR--LLRQAHYYVMGGAWDFNR-YLSAQIRAEAGENGFHRFN--KNGHGGASVVQSNDAILWLNARYLEAQESGDFAAEKMDFNRSLLDWLRKIKDKQPHRAYYWANFDREAAPAFANLADELGKDPVSVKYAEGLDALDSFSRDILATEGEDQGSLKKHTSEKVNREA 906 +Y +Y+P + R+ P+L F GA G A F E AE+ GW++AAS +S NG E A +A + DL +LP+D++RVY +G SGG +A + R+ G AG + A L G L A Y+ + G DFN ++A RA HRF H A+ W+ +EA + G ++ L L + + +WA E A A LA+ LG V L AL + + A EG + + K +R A Sbjct: 57 SYALYLPAAFEGSRRWPVLVLFDPGARGPLAVEA--FREAAEVHGWVLAASNDSRNG-PLRESVLA-AQALWKDLRERLPVDERRVYASGFSGGSRVASV-FPRVAGLTLAGVIGCGAGLAGGIEPASLGAAAYFGLAGLRDFNYPEMTALDRAFDPSGLPHRFFYFDGSHAWPDAGACARAVGWME---IEAMKRGLRPVDREKAGAFLRRELDEADAFEAAGCVFWA---AERLAAAARLAEGLGLGDV-------LPALAGLAGRVAALEGSKEYARFVEAERKRDRRA 330
BLAST of mRNA_P-canaliculata_contig100749.149.1 vs. uniprot
Match: A0A317HXK3_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Blastocatellia bacterium TaxID=2052146 RepID=A0A317HXK3_9BACT) HSP 1 Score: 60.5 bits (145), Expect = 1.950e-7 Identity = 43/117 (36.75%), Postives = 62/117 (52.99%), Query Frame = 1 Query: 13 AFPEGEVSGPITTG---DSNYFVYVPTSLRKDRKAPLLF-FTGATGGKAKSCRQFIEGAEIAGWIIAASVESENGNDFPEGNFAHVEACYDDLMNKLPIDKKRVYFAGDSGGGVMAL 351 A P G V+ I T D +Y VY+P++ +K P +F F GK R F AE G+I+ S S NG D + V A +DD+ ++ PID++R YFAG SGG +++ Sbjct: 30 AIPVGAVTEKIVTQSEPDQSYAVYLPSNYSPAQKWPTIFCFDPGARGKLAVGR-FKSAAEKFGYIVVCSNNSRNGLD-TDVVTKIVNAFWDDVHHRFPIDEQRTYFAGFSGGARLSI 144 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100749.149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100749.149.1 >prot_P-canaliculata_contig100749.149.1 ID=prot_P-canaliculata_contig100749.149.1|Name=mRNA_P-canaliculata_contig100749.149.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=335bp ATDLAFPEGEVSGPITTGDSNYFVYVPTSLRKDRKAPLLFFTGATGGKAKback to top mRNA from alignment at P-canaliculata_contig100749:17..1021- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig100749.149.1 ID=mRNA_P-canaliculata_contig100749.149.1|Name=mRNA_P-canaliculata_contig100749.149.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1005bp|location=Sequence derived from alignment at P-canaliculata_contig100749:17..1021- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig100749:17..1021- >mRNA_P-canaliculata_contig100749.149.1 ID=mRNA_P-canaliculata_contig100749.149.1|Name=mRNA_P-canaliculata_contig100749.149.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2010bp|location=Sequence derived from alignment at P-canaliculata_contig100749:17..1021- (Pelvetia canaliculata dioecious)back to top |