mRNA_P-canaliculata_contig100742.148.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig100742.148.1 vs. uniprot
Match: A0A518EUS2_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518EUS2_9BACT) HSP 1 Score: 251 bits (642), Expect = 1.220e-78 Identity = 115/170 (67.65%), Postives = 141/170 (82.94%), Query Frame = 1 Query: 25 CAGPGTERNLAPLFSSFSAADDATEVEALGGMVLTRRDPVTGERDYWAVRPIVSNRYKENGDRFAWFLPPLGFSSKDAGTGTRIAQLLPIARYHTSQEVSGFWNWSLLVIPGIYWASHGDGRVQRAFFPFYGVFEKFLSVDRARFLLFPLWFQVQRYGRTTNHYLFPIFA 534
CAGP +ER L+PLFSS SAA E+EALGG L+RR+P TG+RDYWA+RP++SNR+ E GDRF WFLPPLGF +D+ GTR+AQ +P+ARY T +E SGF WSLLVIPG+YW++H DGRVQRAFFPF+GV EKFLS+DR F LFPLW +V+RYGRTT+H+LFPIF+
Sbjct: 11 CAGPNSERVLSPLFSSHSAAGGIPEIEALGGAYLSRRNPSTGQRDYWAIRPLLSNRFDEKGDRFTWFLPPLGFIDEDSERGTRVAQFVPLARYATLREESGFKTWSLLVIPGLYWSAHEDGRVQRAFFPFFGVVEKFLSLDRGTFALFPLWLRVERYGRTTDHFLFPIFS 180
BLAST of mRNA_P-canaliculata_contig100742.148.1 vs. uniprot
Match: A0A523PG03_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A523PG03_9BACT) HSP 1 Score: 164 bits (414), Expect = 6.930e-45 Identity = 82/170 (48.24%), Postives = 108/170 (63.53%), Query Frame = 1 Query: 25 CAGPGTERNLAPLFSSFSAADDATEVEALGGMVLTRRDPVTGERDYWAVRPIVSNRYKENGDRFAWFLPPLGFSSKDAGTGTRIAQLLPIARYHTSQEVSGFWNWSLLVIPGIYWASHGDGRVQRAFFPFYGVFEKFLSVDRARFLLFPLWFQVQRYGRTTNHYLFPIFA 534
CA ER++AP+FS FS A E++GGM ++ + + G DYWA+RP+ S R ENG+RF WFLPPLG + R+ QLLPIARY + WS L +PGIYWA DGR+ RA+FPF GV ++F S DR F +FPL+ + +R GR T H+LFPIF+
Sbjct: 37 CASVYDERHVAPVFSRFSPAGGGIGTESVGGMFVSHKPGLEGPLDYWAIRPLYSKRVAENGNRFYWFLPPLG--TYKVRERERVWQLLPIARYQWRLDEGDTERWSFLSLPGIYWAKTSDGRIVRAWFPFGGVADEFFSFDRLEFFMFPLFVRTERNGRRTTHFLFPIFS 204
BLAST of mRNA_P-canaliculata_contig100742.148.1 vs. uniprot
Match: A0A2D5W8Y1_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5W8Y1_9BACT) HSP 1 Score: 150 bits (379), Expect = 1.130e-39 Identity = 84/173 (48.55%), Postives = 104/173 (60.12%), Query Frame = 1 Query: 16 LGACAGPGTERNLAPLFSSFSAADDATEVEALGGMVLTRRDPVTGERDYWAVRPIVSNRYKENGDRFAWFLPPLGFSSKDAGTGTRIAQLLPIARYHTSQEVSGFWNWSLLVIPGIYWASHGDGRVQRAFFPFYGVFEKFLSVDRARFLLFPLWFQVQRYGRTTNHYLFPIFA 534
L +CA ER+LAPLF+ S A+ E EALGG+ +RR G WA+RP S K +G+ + FLPPLG S A I Q LPI RY S + G WSLL +PG+YW+ DGRV RA FP GV E+ +S DR FLLFPL+ Q QR+GRTT H+L P F+
Sbjct: 41 LSSCASFDQERHLAPLFTQLSLAEGGVETEALGGLWKSRRHVPGGVASSWALRPFFSRSVKWDGETSSQFLPPLG--SAHASHNEWIWQFLPIVRYQRSVDELGREEWSLLALPGVYWSKKTDGRVLRAAFPIAGVLERSMSYDRVAFLLFPLFAQTQRHGRTTWHFLAPFFS 211
BLAST of mRNA_P-canaliculata_contig100742.148.1 vs. uniprot
Match: A0A518D2Y2_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Pla163 TaxID=2528008 RepID=A0A518D2Y2_9BACT) HSP 1 Score: 94.7 bits (234), Expect = 2.120e-19 Identity = 66/194 (34.02%), Postives = 100/194 (51.55%), Query Frame = 1 Query: 1 LGLLGLGACAGPGTERNLAPLFSSFSAADDATEVEALGGMVLTRRDPVTGERDYWAVRPIVSNRYKENGDRFAWFLPPLGF--SSKDAGTGTRIAQLLPIARYHTSQEVSGFWNWS----------------LLVIPGIYWASHGDGRVQRAFFPFYGVFEKFLSVDRARFLLFPLWFQVQRYGRTTNHYLFPI 528
L L+ ACA ++ +LAP ++ + ADD E EALGG L RR TGE + A++P+VS R + FL PLG+ S D+ G +LP+ + T+ G W++ +L++PG W+ + G + FP YG +KFL+ DR RF+LFPL+ +R T++ LFP+
Sbjct: 20 LALVLTSACASVDSDIHLAPFWTQSATADDRIEREALGGAYLERRFEPTGELEVRALKPLVSWRQVGPEEEKVEFLAPLGYWRSKVDSTWGL----MLPLLYWRTAP---GDWSFEARGVEAPPEAPEREIDVLLLPGFIWSRNARGASKFGIFPIYGELDKFLTWDRVRFVLFPLYVSARRGKSVTHNVLFPV 206 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100742.148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100742.148.1 >prot_P-canaliculata_contig100742.148.1 ID=prot_P-canaliculata_contig100742.148.1|Name=mRNA_P-canaliculata_contig100742.148.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=178bp LGLLGLGACAGPGTERNLAPLFSSFSAADDATEVEALGGMVLTRRDPVTGback to top mRNA from alignment at P-canaliculata_contig100742:478..1011+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig100742.148.1 ID=mRNA_P-canaliculata_contig100742.148.1|Name=mRNA_P-canaliculata_contig100742.148.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=534bp|location=Sequence derived from alignment at P-canaliculata_contig100742:478..1011+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig100742:478..1011+ >mRNA_P-canaliculata_contig100742.148.1 ID=mRNA_P-canaliculata_contig100742.148.1|Name=mRNA_P-canaliculata_contig100742.148.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1068bp|location=Sequence derived from alignment at P-canaliculata_contig100742:478..1011+ (Pelvetia canaliculata dioecious)back to top |